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ASPNIDRAFT_212876-T1, ASPNIDRAFT_212876-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_212876-T1
Unique NameASPNIDRAFT_212876-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000005.1:847362..848828-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_212876-T1 ID=ASPNIDRAFT_212876-T1|Name=ASPNIDRAFT_212876-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1467bp|location=Sequence derived from alignment at ACJE01000005.1:847362..848828- (Aspergillus niger ATCC 1015)
GACAACCCCAACGACACCTCCCGTCCGTTACCTCTCCCCCCCGACTTTCT
CAATCGCCATATATATCCAACATGGCTGACGCTCCCCGTGGACGTGGAGG
ATTCGGCTCTCGCGGTGACCGTGGTGGTGACCGTGGCCGTGGCCGTGGTC
GCCGTGGTCGTCGCGGTGGTGCCAAGGAGCAGGAGAAGGAATGGCAGCCC
GTCACCAAGCTCGGCCGTCTCGTCAAGGCTGGCAAGATCACCAGCATGGA
GCAGATCTACCTGCACTCCCTGCCCGTGAAGGAGTACCAGATTGTGGACT
TCTTCCTCCCCAAGCTGAAGGATGAGGTCATGAAGGTACGAACCGATCGC
CCGATTACCGAATTGTCGACAAGGAAGATCTACGATTGTGCGCGGGAAAT
AGGATTGAATGCGCGGGTGGAATTGATACGTGGATCGGAATTGCAGACAT
GATGGGATCAAAAAGGATATATCGAAAAAAAAAAAATGGGAGGTGCTGAC
GGCTGGAAAATTTAGATCAAACCCGTCCAGAAGCAGACCCGTGCCGGTCA
GCGTACCCGCTTCAAGGCCGTCGTCGTCATCGGTGACTCCGAGGGTCACA
TCGGTCTCGGTATCAAGACCTCCAAGGAAGTCGCTACCGCTATCCGTGCT
GCCATCACCATCGCCAAGCTCAGCGTTCTCCCCGTCCGTAGAGGTTACTG
GGGTACCAACCTTGGTGAGCCTCACTCTCTGCCCGTTAAGCAGAGCGCCA
AGTGTGGTTCCGTCTCCGTCAGAGTATGTCGCGACTCTTTCGATCCTCGA
TTTCGCTTTTCCGTCCGGCCAATATGCTAACCCGGTTATAGCTTATCCCC
GCTCCCCGTGGTACCGGTCTCGTTGCCTCCCCCGCTGTCAAGCGTCTGCT
CCAGCTTGCCGGTGTCCAGGACGCCTACACCTGCTCTTCCGGTTCCACCA
AGACCCTCGAGAACACTCTCAAGGCTACTTTCCTTGCCGTCGTCAACACC
TACGGCTTCCTCACCCCCAACCTCTGGAAGGAGACTAAGCTCATCCGCAG
CCCTCTGGAGGAGTTCGGTGATGTCCTGCGTCAGGGCAAGAAGTACTAGG
ATAGTGCTATGATGGGAATAACCTTGCATGATTGTTTTTGAATCGAACTA
TTTTCCTACGGGTTTTCAAAAGTCTCTTTTTCGGTTGTAGGATCGGCAGT
ACCGGCAAATCCTGACTTTTCGCGCTATGCTACGCTATATACGGTATTCA
TGGATGTAATGAACACGGGAACAGTGAACAAGAAGAAACAACGTGATGTC
GATTCAAGCTCTCTTACGGCAAGCCGACAGTACTTGAAACGGATGGCTGA
CGGGTTCCTGCATTGCACCGCCTGCACCGTCAGGGTATAGTAGGATGGGC
CAGGCCTTCCATAAGAGATCCATGCGACGTAGTGCTCGATTTGACGAACA
GGAGCTGCTCTCTAGAC
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Coding sequence (CDS) from alignment at ACJE01000005.1:847362..848828-

>ASPNIDRAFT_212876-T1 ID=ASPNIDRAFT_212876-T1|Name=ASPNIDRAFT_212876-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=2340bp|location=Sequence derived from alignment at ACJE01000005.1:847362..848828- (Aspergillus niger ATCC 1015)
CTTATCCCCGCTCCCCGTGGTACCGGTCTCGTTGCCTCCCCCGCTGTCAA
GCGTCTGCTCCAGCTTGCCGGTGTCCAGGACGCCTACACCTGCTCTTCCG
GTTCCACCAAGACCCTCGAGAACACTCTCAAGGCTACTTTCCTTGCCGTC
GTCAACACCTACGGCTTCCTCACCCCCAACCTCTGGAAGGAGACTAAGCT
CATCCGCAGCCCTCTGGAGGAGTTCGGTGATGTCCTGCGTCAGGGCAAGA
AGTACTAGATCAAACCCGTCCAGAAGCAGACCCGTGCCGGTCAGCGTACC
CGCTTCAAGGCCGTCGTCGTCATCGGTGACTCCGAGGGTCACATCGGTCT
CGGTATCAAGACCTCCAAGGAAGTCGCTACCGCTATCCGTGCTGCCATCA
CCATCGCCAAGCTCAGCGTTCTCCCCGTCCGTAGAGGTTACTGGGGTACC
AACCTTGGTGAGCCTCACTCTCTGCCCGTTAAGCAGAGCGCCAAGTGTGG
TTCCGTCTCCGTCAGAATGGCTGACGCTCCCCGTGGACGTGGAGGATTCG
GCTCTCGCGGTGACCGTGGTGGTGACCGTGGCCGTGGCCGTGGTCGCCGT
GGTCGTCGCGGTGGTGCCAAGGAGCAGGAGAAGGAATGGCAGCCCGTCAC
CAAGCTCGGCCGTCTCGTCAAGGCTGGCAAGATCACCAGCATGGAGCAGA
TCTACCTGCACTCCCTGCCCGTGAAGGAGTACCAGATTGTGGACTTCTTC
CTCCCCAAGCTGAAGGATGAGGTCATGAAGCTTATCCCCGCTCCCCGTGG
TACCGGTCTCGTTGCCTCCCCCGCTGTCAAGCGTCTGCTCCAGCTTGCCG
GTGTCCAGGACGCCTACACCTGCTCTTCCGGTTCCACCAAGACCCTCGAG
AACACTCTCAAGGCTACTTTCCTTGCCGTCGTCAACACCTACGGCTTCCT
CACCCCCAACCTCTGGAAGGAGACTAAGCTCATCCGCAGCCCTCTGGAGG
AGTTCGGTGATGTCCTGCGTCAGGGCAAGAAGTACTAGATCAAACCCGTC
CAGAAGCAGACCCGTGCCGGTCAGCGTACCCGCTTCAAGGCCGTCGTCGT
CATCGGTGACTCCGAGGGTCACATCGGTCTCGGTATCAAGACCTCCAAGG
AAGTCGCTACCGCTATCCGTGCTGCCATCACCATCGCCAAGCTCAGCGTT
CTCCCCGTCCGTAGAGGTTACTGGGGTACCAACCTTGGTGAGCCTCACTC
TCTGCCCGTTAAGCAGAGCGCCAAGTGTGGTTCCGTCTCCGTCAGAATGG
CTGACGCTCCCCGTGGACGTGGAGGATTCGGCTCTCGCGGTGACCGTGGT
GGTGACCGTGGCCGTGGCCGTGGTCGCCGTGGTCGTCGCGGTGGTGCCAA
GGAGCAGGAGAAGGAATGGCAGCCCGTCACCAAGCTCGGCCGTCTCGTCA
AGGCTGGCAAGATCACCAGCATGGAGCAGATCTACCTGCACTCCCTGCCC
GTGAAGGAGTACCAGATTGTGGACTTCTTCCTCCCCAAGCTGAAGGATGA
GGTCATGAAGCTTATCCCCGCTCCCCGTGGTACCGGTCTCGTTGCCTCCC
CCGCTGTCAAGCGTCTGCTCCAGCTTGCCGGTGTCCAGGACGCCTACACC
TGCTCTTCCGGTTCCACCAAGACCCTCGAGAACACTCTCAAGGCTACTTT
CCTTGCCGTCGTCAACACCTACGGCTTCCTCACCCCCAACCTCTGGAAGG
AGACTAAGCTCATCCGCAGCCCTCTGGAGGAGTTCGGTGATGTCCTGCGT
CAGGGCAAGAAGTACTAGATCAAACCCGTCCAGAAGCAGACCCGTGCCGG
TCAGCGTACCCGCTTCAAGGCCGTCGTCGTCATCGGTGACTCCGAGGGTC
ACATCGGTCTCGGTATCAAGACCTCCAAGGAAGTCGCTACCGCTATCCGT
GCTGCCATCACCATCGCCAAGCTCAGCGTTCTCCCCGTCCGTAGAGGTTA
CTGGGGTACCAACCTTGGTGAGCCTCACTCTCTGCCCGTTAAGCAGAGCG
CCAAGTGTGGTTCCGTCTCCGTCAGAATGGCTGACGCTCCCCGTGGACGT
GGAGGATTCGGCTCTCGCGGTGACCGTGGTGGTGACCGTGGCCGTGGCCG
TGGTCGCCGTGGTCGTCGCGGTGGTGCCAAGGAGCAGGAGAAGGAATGGC
AGCCCGTCACCAAGCTCGGCCGTCTCGTCAAGGCTGGCAAGATCACCAGC
ATGGAGCAGATCTACCTGCACTCCCTGCCCGTGAAGGAGTACCAGATTGT
GGACTTCTTCCTCCCCAAGCTGAAGGATGAGGTCATGAAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015935small ribosomal subunit
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS2ASPNIDRAFT_212876Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_212876-T1ASPNIDRAFT_212876-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_212876-T1.cdsASPNIDRAFT_212876-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_212876-T1.utr3p1ASPNIDRAFT_212876-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_212876-T1.exon3ASPNIDRAFT_212876-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_212876-T1.exon2ASPNIDRAFT_212876-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_212876-T1.exon1ASPNIDRAFT_212876-T1.exon1Aspergillus niger ATCC 1015exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_212876-T1.utr5p1ASPNIDRAFT_212876-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09264903
DBxrefInterPro:IPR020568
DBxrefInterPro:IPR018192
DBxrefInterPro:IPR014721
DBxrefInterPro:IPR013810
DBxrefInterPro:IPR005324
DBxrefInterPro:IPR005711
DBxrefPFAM:PF03719
DBxrefPFAM:PF00333
Product40S ribosomal protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000005.1supercontigACJE01000005.1:847362..848828 -
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