|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at ACJE01000012.1:865495..867222- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >ASPNIDRAFT_214112-T1 ID=ASPNIDRAFT_214112-T1|Name=ASPNIDRAFT_214112-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1728bp|location=Sequence derived from alignment at ACJE01000012.1:865495..867222- (Aspergillus niger ATCC 1015)
CCCAGTTATCTCTGCACCCTTCAAGCCAGCCTGTTTAAAATGGCGGTCGC
AGTGGCTAAGGAGGAGATGGACTACTCAATCAAGCCTGAGGCTAGTGCCT
CGAAAATCGACACGTCGGAGTGGCCGCTTCTTCTGAAGAATTATGACAAG
CGTACGTTCACTTCAAATCCACATCTCATATCAATGTAGCTGGTGCTGAT
TTATAATATCAGTGCTTGTCAGGACCGGCCACTTCACGCCAATTCCCGCT
GGTAGCACTCCTCTGAAGCGTGACCTGAAGTCGTACATCAACTCCGGTGT
CATCAACCTGGACAAGCCTTCAAACCCCTCCAGTCATGAGGTTGTTGCTT
GGATGAAGAGAATCCTGAGGTAAATCTTCTATTACGTTCTCCTCTTGTCT
TCACGATACTGAGACTAGTTTTGTAAAGGGCGGAGAAGACTGGTCACAGC
GGAACCCTCGACCCCAAGGTCACCGGTTGCTTGATTGTCTGCATTGACCG
TGCTACTCGCCTGGTGAAATCCCAACAGGGTGCCGGAAAGGAATACGTTT
GCGTGATCCGCCTACATGATAAGATCCCCGGTGGCGAGGCTCAGTTTAAG
CGGGCTCTTGAGACCTTGACTGGAGCCCTTTTCCAGCGGCCGCCATTGAT
CTCTGCTGTTAAGCGTCAGCTTCGTATCCGGACAATTCACGAAAGCAAGC
TTTACGAGTTCGATAATGAGAGGCATCTTGGTGTCTTCTGGGTCAGCTGT
GAAGCCGGAACGTACATCAGAACCCTTTGTGTCCACTTGGGTCTTTTGCT
CGGTGTTGGTGCGCACATGCAGGAACTTCGCCGTGTTCGCAGTGGTGCCA
TGGATGAGAACAGTGGAATGGTGACTCTACACGACGTTTTGGACGCCCAA
TGGATGTACGACAACCAGCGGGACGAGTCTTATTTGAGGAAGGTCATCAA
ACCTCTGGAGACTCTTCTCACCACGTACAAGCGTATCGTTGTCAAAGACA
GTGCTGTTAACGCTGTATGCTATGGTGCTAAGCTTATGGTCCCTGGTCTC
CTCCGCTTCGGTAAGATCTTGTCTTCTCCATATGGTTCGAATTGAATTGC
TGACTCTGGTGAAGAGGCTGGTATTGAGGTCAACGAAGAGGTAGTTCTCA
TGACCACTAAGGGTGAGGCTATTGCCATCGGTATCGCTCAAATGTCGACC
GTTGAGCTGTCCACCTGCGATCACGGCGTTGTGGCCAAGGTCAAGCGTTG
TATCATGGAACGCGACCTGTACCCGCGTCGCTGGGGTTTGGGGCCTGTGG
CTTTGGAGAAGAAGAAGCTCAAGTCCGCCGGAAAACTGGATGTAAGCTAT
CCTATGGAATACTCACATATGTTCTGGCTTTGCTGACAAATAATGCAGAA
ATACGGTCGTGCTAACGAGGCTACGCCTGCTAAATGGAAGAACGACTACA
AGGATTACAGCGCACCCGAAGAAGAAGGCGCACAGGCAGTGGCTCAACCT
GTTGCTCAAGAAGAAACCGCTACTCCTGCTGAGCAAACCGAAACCCCTTC
TTCTCCCAACAAGATGGATGTTGATGACGACGACGACGAGAAGAAGAAGC
GCAAGCGCCACGAAGGTGAGACGCCCGAGGAACGGGCCGAGCGCAAGCGC
AAGAAGAAGGAGAAGAAGGAAAAGAAGGAGCGCCGGAAGTCCAAACAGGA
GAAGGAAGAGAGCGACGATAGTGATTAA back to topCoding sequence (CDS) from alignment at ACJE01000012.1:865495..867222- >ASPNIDRAFT_214112-T1 ID=ASPNIDRAFT_214112-T1|Name=ASPNIDRAFT_214112-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=7410bp|location=Sequence derived from alignment at ACJE01000012.1:865495..867222- (Aspergillus niger ATCC 1015)
AAATACGGTCGTGCTAACGAGGCTACGCCTGCTAAATGGAAGAACGACTA
CAAGGATTACAGCGCACCCGAAGAAGAAGGCGCACAGGCAGTGGCTCAAC
CTGTTGCTCAAGAAGAAACCGCTACTCCTGCTGAGCAAACCGAAACCCCT
TCTTCTCCCAACAAGATGGATGTTGATGACGACGACGACGAGAAGAAGAA
GCGCAAGCGCCACGAAGGTGAGACGCCCGAGGAACGGGCCGAGCGCAAGC
GCAAGAAGAAGGAGAAGAAGGAAAAGAAGGAGCGCCGGAAGTCCAAACAG
GAGAAGGAAGAGAGCGACGATAGTGATTAAAGGCTGGTATTGAGGTCAAC
GAAGAGGTAGTTCTCATGACCACTAAGGGTGAGGCTATTGCCATCGGTAT
CGCTCAAATGTCGACCGTTGAGCTGTCCACCTGCGATCACGGCGTTGTGG
CCAAGGTCAAGCGTTGTATCATGGAACGCGACCTGTACCCGCGTCGCTGG
GGTTTGGGGCCTGTGGCTTTGGAGAAGAAGAAGCTCAAGTCCGCCGGAAA
ACTGGATGGCGGAGAAGACTGGTCACAGCGGAACCCTCGACCCCAAGGTC
ACCGGTTGCTTGATTGTCTGCATTGACCGTGCTACTCGCCTGGTGAAATC
CCAACAGGGTGCCGGAAAGGAATACGTTTGCGTGATCCGCCTACATGATA
AGATCCCCGGTGGCGAGGCTCAGTTTAAGCGGGCTCTTGAGACCTTGACT
GGAGCCCTTTTCCAGCGGCCGCCATTGATCTCTGCTGTTAAGCGTCAGCT
TCGTATCCGGACAATTCACGAAAGCAAGCTTTACGAGTTCGATAATGAGA
GGCATCTTGGTGTCTTCTGGGTCAGCTGTGAAGCCGGAACGTACATCAGA
ACCCTTTGTGTCCACTTGGGTCTTTTGCTCGGTGTTGGTGCGCACATGCA
GGAACTTCGCCGTGTTCGCAGTGGTGCCATGGATGAGAACAGTGGAATGG
TGACTCTACACGACGTTTTGGACGCCCAATGGATGTACGACAACCAGCGG
GACGAGTCTTATTTGAGGAAGGTCATCAAACCTCTGGAGACTCTTCTCAC
CACGTACAAGCGTATCGTTGTCAAAGACAGTGCTGTTAACGCTGTATGCT
ATGGTGCTAAGCTTATGGTCCCTGGTCTCCTCCGCTTCGGTAAGATCTTG
TCTTCTCCATATGTGCTTGTCAGGACCGGCCACTTCACGCCAATTCCCGC
TGGTAGCACTCCTCTGAAGCGTGACCTGAAGTCGTACATCAACTCCGGTG
TCATCAACCTGGACAAGCCTTCAAACCCCTCCAGTCATGAGGTTGTTGCT
TGGATGAAGAGAATCCTGAGATGGCGGTCGCAGTGGCTAAGGAGGAGATG
GACTACTCAATCAAGCCTGAGGCTAGTGCCTCGAAAATCGACACGTCGGA
GTGGCCGCTTCTTCTGAAGAATTATGACAAGCAAATACGGTCGTGCTAAC
GAGGCTACGCCTGCTAAATGGAAGAACGACTACAAGGATTACAGCGCACC
CGAAGAAGAAGGCGCACAGGCAGTGGCTCAACCTGTTGCTCAAGAAGAAA
CCGCTACTCCTGCTGAGCAAACCGAAACCCCTTCTTCTCCCAACAAGATG
GATGTTGATGACGACGACGACGAGAAGAAGAAGCGCAAGCGCCACGAAGG
TGAGACGCCCGAGGAACGGGCCGAGCGCAAGCGCAAGAAGAAGGAGAAGA
AGGAAAAGAAGGAGCGCCGGAAGTCCAAACAGGAGAAGGAAGAGAGCGAC
GATAGTGATTAAAGGCTGGTATTGAGGTCAACGAAGAGGTAGTTCTCATG
ACCACTAAGGGTGAGGCTATTGCCATCGGTATCGCTCAAATGTCGACCGT
TGAGCTGTCCACCTGCGATCACGGCGTTGTGGCCAAGGTCAAGCGTTGTA
TCATGGAACGCGACCTGTACCCGCGTCGCTGGGGTTTGGGGCCTGTGGCT
TTGGAGAAGAAGAAGCTCAAGTCCGCCGGAAAACTGGATGGCGGAGAAGA
CTGGTCACAGCGGAACCCTCGACCCCAAGGTCACCGGTTGCTTGATTGTC
TGCATTGACCGTGCTACTCGCCTGGTGAAATCCCAACAGGGTGCCGGAAA
GGAATACGTTTGCGTGATCCGCCTACATGATAAGATCCCCGGTGGCGAGG
CTCAGTTTAAGCGGGCTCTTGAGACCTTGACTGGAGCCCTTTTCCAGCGG
CCGCCATTGATCTCTGCTGTTAAGCGTCAGCTTCGTATCCGGACAATTCA
CGAAAGCAAGCTTTACGAGTTCGATAATGAGAGGCATCTTGGTGTCTTCT
GGGTCAGCTGTGAAGCCGGAACGTACATCAGAACCCTTTGTGTCCACTTG
GGTCTTTTGCTCGGTGTTGGTGCGCACATGCAGGAACTTCGCCGTGTTCG
CAGTGGTGCCATGGATGAGAACAGTGGAATGGTGACTCTACACGACGTTT
TGGACGCCCAATGGATGTACGACAACCAGCGGGACGAGTCTTATTTGAGG
AAGGTCATCAAACCTCTGGAGACTCTTCTCACCACGTACAAGCGTATCGT
TGTCAAAGACAGTGCTGTTAACGCTGTATGCTATGGTGCTAAGCTTATGG
TCCCTGGTCTCCTCCGCTTCGGTAAGATCTTGTCTTCTCCATATGTGCTT
GTCAGGACCGGCCACTTCACGCCAATTCCCGCTGGTAGCACTCCTCTGAA
GCGTGACCTGAAGTCGTACATCAACTCCGGTGTCATCAACCTGGACAAGC
CTTCAAACCCCTCCAGTCATGAGGTTGTTGCTTGGATGAAGAGAATCCTG
AGATGGCGGTCGCAGTGGCTAAGGAGGAGATGGACTACTCAATCAAGCCT
GAGGCTAGTGCCTCGAAAATCGACACGTCGGAGTGGCCGCTTCTTCTGAA
GAATTATGACAAGCAAATACGGTCGTGCTAACGAGGCTACGCCTGCTAAA
TGGAAGAACGACTACAAGGATTACAGCGCACCCGAAGAAGAAGGCGCACA
GGCAGTGGCTCAACCTGTTGCTCAAGAAGAAACCGCTACTCCTGCTGAGC
AAACCGAAACCCCTTCTTCTCCCAACAAGATGGATGTTGATGACGACGAC
GACGAGAAGAAGAAGCGCAAGCGCCACGAAGGTGAGACGCCCGAGGAACG
GGCCGAGCGCAAGCGCAAGAAGAAGGAGAAGAAGGAAAAGAAGGAGCGCC
GGAAGTCCAAACAGGAGAAGGAAGAGAGCGACGATAGTGATTAAAGGCTG
GTATTGAGGTCAACGAAGAGGTAGTTCTCATGACCACTAAGGGTGAGGCT
ATTGCCATCGGTATCGCTCAAATGTCGACCGTTGAGCTGTCCACCTGCGA
TCACGGCGTTGTGGCCAAGGTCAAGCGTTGTATCATGGAACGCGACCTGT
ACCCGCGTCGCTGGGGTTTGGGGCCTGTGGCTTTGGAGAAGAAGAAGCTC
AAGTCCGCCGGAAAACTGGATGGCGGAGAAGACTGGTCACAGCGGAACCC
TCGACCCCAAGGTCACCGGTTGCTTGATTGTCTGCATTGACCGTGCTACT
CGCCTGGTGAAATCCCAACAGGGTGCCGGAAAGGAATACGTTTGCGTGAT
CCGCCTACATGATAAGATCCCCGGTGGCGAGGCTCAGTTTAAGCGGGCTC
TTGAGACCTTGACTGGAGCCCTTTTCCAGCGGCCGCCATTGATCTCTGCT
GTTAAGCGTCAGCTTCGTATCCGGACAATTCACGAAAGCAAGCTTTACGA
GTTCGATAATGAGAGGCATCTTGGTGTCTTCTGGGTCAGCTGTGAAGCCG
GAACGTACATCAGAACCCTTTGTGTCCACTTGGGTCTTTTGCTCGGTGTT
GGTGCGCACATGCAGGAACTTCGCCGTGTTCGCAGTGGTGCCATGGATGA
GAACAGTGGAATGGTGACTCTACACGACGTTTTGGACGCCCAATGGATGT
ACGACAACCAGCGGGACGAGTCTTATTTGAGGAAGGTCATCAAACCTCTG
GAGACTCTTCTCACCACGTACAAGCGTATCGTTGTCAAAGACAGTGCTGT
TAACGCTGTATGCTATGGTGCTAAGCTTATGGTCCCTGGTCTCCTCCGCT
TCGGTAAGATCTTGTCTTCTCCATATGTGCTTGTCAGGACCGGCCACTTC
ACGCCAATTCCCGCTGGTAGCACTCCTCTGAAGCGTGACCTGAAGTCGTA
CATCAACTCCGGTGTCATCAACCTGGACAAGCCTTCAAACCCCTCCAGTC
ATGAGGTTGTTGCTTGGATGAAGAGAATCCTGAGATGGCGGTCGCAGTGG
CTAAGGAGGAGATGGACTACTCAATCAAGCCTGAGGCTAGTGCCTCGAAA
ATCGACACGTCGGAGTGGCCGCTTCTTCTGAAGAATTATGACAAGCAAAT
ACGGTCGTGCTAACGAGGCTACGCCTGCTAAATGGAAGAACGACTACAAG
GATTACAGCGCACCCGAAGAAGAAGGCGCACAGGCAGTGGCTCAACCTGT
TGCTCAAGAAGAAACCGCTACTCCTGCTGAGCAAACCGAAACCCCTTCTT
CTCCCAACAAGATGGATGTTGATGACGACGACGACGAGAAGAAGAAGCGC
AAGCGCCACGAAGGTGAGACGCCCGAGGAACGGGCCGAGCGCAAGCGCAA
GAAGAAGGAGAAGAAGGAAAAGAAGGAGCGCCGGAAGTCCAAACAGGAGA
AGGAAGAGAGCGACGATAGTGATTAAAGGCTGGTATTGAGGTCAACGAAG
AGGTAGTTCTCATGACCACTAAGGGTGAGGCTATTGCCATCGGTATCGCT
CAAATGTCGACCGTTGAGCTGTCCACCTGCGATCACGGCGTTGTGGCCAA
GGTCAAGCGTTGTATCATGGAACGCGACCTGTACCCGCGTCGCTGGGGTT
TGGGGCCTGTGGCTTTGGAGAAGAAGAAGCTCAAGTCCGCCGGAAAACTG
GATGGCGGAGAAGACTGGTCACAGCGGAACCCTCGACCCCAAGGTCACCG
GTTGCTTGATTGTCTGCATTGACCGTGCTACTCGCCTGGTGAAATCCCAA
CAGGGTGCCGGAAAGGAATACGTTTGCGTGATCCGCCTACATGATAAGAT
CCCCGGTGGCGAGGCTCAGTTTAAGCGGGCTCTTGAGACCTTGACTGGAG
CCCTTTTCCAGCGGCCGCCATTGATCTCTGCTGTTAAGCGTCAGCTTCGT
ATCCGGACAATTCACGAAAGCAAGCTTTACGAGTTCGATAATGAGAGGCA
TCTTGGTGTCTTCTGGGTCAGCTGTGAAGCCGGAACGTACATCAGAACCC
TTTGTGTCCACTTGGGTCTTTTGCTCGGTGTTGGTGCGCACATGCAGGAA
CTTCGCCGTGTTCGCAGTGGTGCCATGGATGAGAACAGTGGAATGGTGAC
TCTACACGACGTTTTGGACGCCCAATGGATGTACGACAACCAGCGGGACG
AGTCTTATTTGAGGAAGGTCATCAAACCTCTGGAGACTCTTCTCACCACG
TACAAGCGTATCGTTGTCAAAGACAGTGCTGTTAACGCTGTATGCTATGG
TGCTAAGCTTATGGTCCCTGGTCTCCTCCGCTTCGGTAAGATCTTGTCTT
CTCCATATGTGCTTGTCAGGACCGGCCACTTCACGCCAATTCCCGCTGGT
AGCACTCCTCTGAAGCGTGACCTGAAGTCGTACATCAACTCCGGTGTCAT
CAACCTGGACAAGCCTTCAAACCCCTCCAGTCATGAGGTTGTTGCTTGGA
TGAAGAGAATCCTGAGATGGCGGTCGCAGTGGCTAAGGAGGAGATGGACT
ACTCAATCAAGCCTGAGGCTAGTGCCTCGAAAATCGACACGTCGGAGTGG
CCGCTTCTTCTGAAGAATTATGACAAGCAAATACGGTCGTGCTAACGAGG
CTACGCCTGCTAAATGGAAGAACGACTACAAGGATTACAGCGCACCCGAA
GAAGAAGGCGCACAGGCAGTGGCTCAACCTGTTGCTCAAGAAGAAACCGC
TACTCCTGCTGAGCAAACCGAAACCCCTTCTTCTCCCAACAAGATGGATG
TTGATGACGACGACGACGAGAAGAAGAAGCGCAAGCGCCACGAAGGTGAG
ACGCCCGAGGAACGGGCCGAGCGCAAGCGCAAGAAGAAGGAGAAGAAGGA
AAAGAAGGAGCGCCGGAAGTCCAAACAGGAGAAGGAAGAGAGCGACGATA
GTGATTAAAGGCTGGTATTGAGGTCAACGAAGAGGTAGTTCTCATGACCA
CTAAGGGTGAGGCTATTGCCATCGGTATCGCTCAAATGTCGACCGTTGAG
CTGTCCACCTGCGATCACGGCGTTGTGGCCAAGGTCAAGCGTTGTATCAT
GGAACGCGACCTGTACCCGCGTCGCTGGGGTTTGGGGCCTGTGGCTTTGG
AGAAGAAGAAGCTCAAGTCCGCCGGAAAACTGGATGGCGGAGAAGACTGG
TCACAGCGGAACCCTCGACCCCAAGGTCACCGGTTGCTTGATTGTCTGCA
TTGACCGTGCTACTCGCCTGGTGAAATCCCAACAGGGTGCCGGAAAGGAA
TACGTTTGCGTGATCCGCCTACATGATAAGATCCCCGGTGGCGAGGCTCA
GTTTAAGCGGGCTCTTGAGACCTTGACTGGAGCCCTTTTCCAGCGGCCGC
CATTGATCTCTGCTGTTAAGCGTCAGCTTCGTATCCGGACAATTCACGAA
AGCAAGCTTTACGAGTTCGATAATGAGAGGCATCTTGGTGTCTTCTGGGT
CAGCTGTGAAGCCGGAACGTACATCAGAACCCTTTGTGTCCACTTGGGTC
TTTTGCTCGGTGTTGGTGCGCACATGCAGGAACTTCGCCGTGTTCGCAGT
GGTGCCATGGATGAGAACAGTGGAATGGTGACTCTACACGACGTTTTGGA
CGCCCAATGGATGTACGACAACCAGCGGGACGAGTCTTATTTGAGGAAGG
TCATCAAACCTCTGGAGACTCTTCTCACCACGTACAAGCGTATCGTTGTC
AAAGACAGTGCTGTTAACGCTGTATGCTATGGTGCTAAGCTTATGGTCCC
TGGTCTCCTCCGCTTCGGTAAGATCTTGTCTTCTCCATATGTGCTTGTCA
GGACCGGCCACTTCACGCCAATTCCCGCTGGTAGCACTCCTCTGAAGCGT
GACCTGAAGTCGTACATCAACTCCGGTGTCATCAACCTGGACAAGCCTTC
AAACCCCTCCAGTCATGAGGTTGTTGCTTGGATGAAGAGAATCCTGAGAT
GGCGGTCGCAGTGGCTAAGGAGGAGATGGACTACTCAATCAAGCCTGAGG
CTAGTGCCTCGAAAATCGACACGTCGGAGTGGCCGCTTCTTCTGAAGAAT
TATGACAAGC back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0001522 | pseudouridine synthesis |
| GO:0009451 | RNA modification |
| GO:0006396 | RNA processing |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0009982 | pseudouridine synthase activity |
| GO:0003723 | RNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG0926273Q |
| DBxref | InterPro:IPR015947 |
| DBxref | InterPro:IPR020103 |
| DBxref | InterPro:IPR032819 |
| DBxref | InterPro:IPR002501 |
| DBxref | InterPro:IPR004802 |
| DBxref | InterPro:IPR004521 |
| DBxref | InterPro:IPR012960 |
| DBxref | InterPro:IPR002478 |
| DBxref | PFAM:PF01509 |
| DBxref | PFAM:PF16198 |
| DBxref | PFAM:PF01472 |
| DBxref | PFAM:PF08068 |
| Product | centromere/microtubule-binding protein cbf5 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ACJE01000012.1 | supercontig | ACJE01000012.1:865495..867222 - |
|
