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ASPNIDRAFT_225671-T1, ASPNIDRAFT_225671-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_225671-T1
Unique NameASPNIDRAFT_225671-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000021.1:1746230..1748608-

Legend: CDSpolypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_225671-T1 ID=ASPNIDRAFT_225671-T1|Name=ASPNIDRAFT_225671-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=2379bp|location=Sequence derived from alignment at ACJE01000021.1:1746230..1748608- (Aspergillus niger ATCC 1015)
ATGCATCCAGACTCGGAAACGATCCGCATTCTTGTCTCTACAGACAACCA
TGTCGGATACAATGAACGGGATCCCATCCGTGGTGATGACAGCTGGAAAA
GCTTTCATGAGGTAATGTGTCTGGCCAAGGAACAAGATGTGGACATGGTG
CTTCTGGCAGGCGATCTCTTCCACGAGAACAAGCCATCGCGCAAGTCCAT
GTACCAAGTTATGCGCTCCATTCGTATGAACTGTCTCGGCGATAAGCCTT
GCGAACTGGAGATGCTGAGTGATGCGAGCGAAAATTTTCAGGGTGCTTTC
AATCACGTGAACTACGAGGATTTGGATATCAATGTGGCTATCCCCATCTT
TTCAATTCACGGCAATCACGATGATCCGTCCGGAGAAGGACATCTGGCTG
CATTGGACCTACTTCAGGTGTCGGGGTTGATCAATTACTATGGACGGACC
CCCGAGTCGGACAATATCCAGATTAAACCGGTTTTGCTCCAGAAAGGACG
CACGAAACTTGCTCTCTACGGTATGAGCAACGTCCGCGATGAGCGTCTAT
TTCGCACATTTCGAGACGGCAAGGTCAAGTTCTACCAACCCTCAATCCAG
AAAGAAGACTGGTTCAACTTGATGTCTGTTCATCAGAACCATTATGCACA
CACTGAGACAGGCTATTTGCCCGAGAATTTCCTACCCGAATTCCTGGACC
TCGTCGTCTGGGGCCACGAACACGAGTGTTTAATCAACCCACGATTGAAC
CCCGAGACCAAGTTTCACGTCATGCAGCCCGGCTCATCCGTGGCGACATC
CCTGGTTCCTGGCGAATCAGTGGCCAAACATGTAGCCATCCTCAGTATCA
CAGGCCGGGAGTTCAAATGCGAGCCCATCCGTCTCAAGTCCGTCCGCCCA
TTCGCCATGCGCGAAATCATTCTCTCCGAAGAAAAAGGCGCGCAAAAGCT
TGCCCGCAAGGACAACAACCGCACGGAAGTGACTCGCCTTCTCATGGAGA
TTGTCGAGGAACTGATCGAAGAAGCGAAAACGGAATGGCTAGAAATGCAA
GATGAGACAGCAGAAGACGAAGAGCTAGAAGTCCCACTACCACTAGTGCG
ACTGCGCGTTGAAACCTCAACGCCAGAAGGAGGCAGTTATGACTGTGAGA
ACCCGCAGCGATTCTCCAACCGCTTCGTAGGCAAGGTCGCCAATGTGAAC
GATGTCGTCCAGTTCTACCGCAAGAAGAAAAACACCAACAGTACGCGCAA
ACCGGGTGAAACCGACCTCGACGAGACGGCAGTCTCACACCTCTCCACCC
TCGACACCGTCAAAGTCGAACAATTAGTGCGCGACTTCCTCTCCGCACAG
TCTCTGACCATCCTCCCACAGAACTCCTTCGGCGACGCAGTCGCCCAATT
CATCGACAAAGACGACAAACATGCCTTGGAAATGTTCGTCAACGAATCAC
TCGAGAGCCAAATGAAGCACTTACTGGCCCTAGATCGCGACCACGATCTA
GAGGAAGAAGAAGAAATTGCAGAAAGCTCCCTACAAAAAGCCATGGAGAG
ATATCGCACTCAAATGGAAGACATGTTCTCCCGCGGTATCAAGAAACGCA
CCCGCGGCAAGAAGCGCTTCAAGCCCAAGCCCGACGGCTGGGACACCGAA
TTCGACGGTGTCTGGGAGGACCAACCCGGCGCTCTCATCCACTCCGACAA
CGAGGACGGCGATCCCAATGAAGACGTAGCCGGCGAGGATGGCGCCGAAC
CACCCACCACATCACGAGCAACATCATCCACACGCGGCCGCGGCCGAGGC
CGTGGCGGTAGAGCCACCACCACTGCCGCTACAACCCGCAAAACCGCCAC
CACAAAAGCAGCACCTGCTACTACTACTTCAAAGAAAACCACAACCTCTA
CTAAAAGCCGTAAACGCCGCACCGTCTCCGACGAAGAAGATGAACAAGAG
GATGTCATAATGCTCGACGATGACGATGATGACGACGACGACAACGCAGC
CACCTCCCTCCCCAACATAGACGAAGAGGACGATGATGACGATGACTCCC
TCTTCGTCAAACAACCCGCCAAATCTACTACCAGTACTAGATCTCGCAGA
ACAACAACAGCAGCAACAGCGAAAGCAACAACACAACGCCGCAAAGCTCC
ATCTCCAGCACCTTCATCCAATACAGTTGGAGGAACCGGACAAGCTACGC
GAAGAACTCGGGGCAAGCAAGCAACCCAGACAACGCTGAATTTTGTAGGC
TCGCAAAGTAGTGTGCGAGGGACGGCGGGGTCTGGGAGATCAATGAGGGC
TACGAGGGCGGCGAGTGAGGATATTGAGGATGATAGTGATGCGTTTGAGC
CGATGGCTAGTAGTGCGAGGCGCAGATGA
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Coding sequence (CDS) from alignment at ACJE01000021.1:1746230..1748608-

>ASPNIDRAFT_225671-T1 ID=ASPNIDRAFT_225671-T1|Name=ASPNIDRAFT_225671-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=2379bp|location=Sequence derived from alignment at ACJE01000021.1:1746230..1748608- (Aspergillus niger ATCC 1015)
ATGCATCCAGACTCGGAAACGATCCGCATTCTTGTCTCTACAGACAACCA
TGTCGGATACAATGAACGGGATCCCATCCGTGGTGATGACAGCTGGAAAA
GCTTTCATGAGGTAATGTGTCTGGCCAAGGAACAAGATGTGGACATGGTG
CTTCTGGCAGGCGATCTCTTCCACGAGAACAAGCCATCGCGCAAGTCCAT
GTACCAAGTTATGCGCTCCATTCGTATGAACTGTCTCGGCGATAAGCCTT
GCGAACTGGAGATGCTGAGTGATGCGAGCGAAAATTTTCAGGGTGCTTTC
AATCACGTGAACTACGAGGATTTGGATATCAATGTGGCTATCCCCATCTT
TTCAATTCACGGCAATCACGATGATCCGTCCGGAGAAGGACATCTGGCTG
CATTGGACCTACTTCAGGTGTCGGGGTTGATCAATTACTATGGACGGACC
CCCGAGTCGGACAATATCCAGATTAAACCGGTTTTGCTCCAGAAAGGACG
CACGAAACTTGCTCTCTACGGTATGAGCAACGTCCGCGATGAGCGTCTAT
TTCGCACATTTCGAGACGGCAAGGTCAAGTTCTACCAACCCTCAATCCAG
AAAGAAGACTGGTTCAACTTGATGTCTGTTCATCAGAACCATTATGCACA
CACTGAGACAGGCTATTTGCCCGAGAATTTCCTACCCGAATTCCTGGACC
TCGTCGTCTGGGGCCACGAACACGAGTGTTTAATCAACCCACGATTGAAC
CCCGAGACCAAGTTTCACGTCATGCAGCCCGGCTCATCCGTGGCGACATC
CCTGGTTCCTGGCGAATCAGTGGCCAAACATGTAGCCATCCTCAGTATCA
CAGGCCGGGAGTTCAAATGCGAGCCCATCCGTCTCAAGTCCGTCCGCCCA
TTCGCCATGCGCGAAATCATTCTCTCCGAAGAAAAAGGCGCGCAAAAGCT
TGCCCGCAAGGACAACAACCGCACGGAAGTGACTCGCCTTCTCATGGAGA
TTGTCGAGGAACTGATCGAAGAAGCGAAAACGGAATGGCTAGAAATGCAA
GATGAGACAGCAGAAGACGAAGAGCTAGAAGTCCCACTACCACTAGTGCG
ACTGCGCGTTGAAACCTCAACGCCAGAAGGAGGCAGTTATGACTGTGAGA
ACCCGCAGCGATTCTCCAACCGCTTCGTAGGCAAGGTCGCCAATGTGAAC
GATGTCGTCCAGTTCTACCGCAAGAAGAAAAACACCAACAGTACGCGCAA
ACCGGGTGAAACCGACCTCGACGAGACGGCAGTCTCACACCTCTCCACCC
TCGACACCGTCAAAGTCGAACAATTAGTGCGCGACTTCCTCTCCGCACAG
TCTCTGACCATCCTCCCACAGAACTCCTTCGGCGACGCAGTCGCCCAATT
CATCGACAAAGACGACAAACATGCCTTGGAAATGTTCGTCAACGAATCAC
TCGAGAGCCAAATGAAGCACTTACTGGCCCTAGATCGCGACCACGATCTA
GAGGAAGAAGAAGAAATTGCAGAAAGCTCCCTACAAAAAGCCATGGAGAG
ATATCGCACTCAAATGGAAGACATGTTCTCCCGCGGTATCAAGAAACGCA
CCCGCGGCAAGAAGCGCTTCAAGCCCAAGCCCGACGGCTGGGACACCGAA
TTCGACGGTGTCTGGGAGGACCAACCCGGCGCTCTCATCCACTCCGACAA
CGAGGACGGCGATCCCAATGAAGACGTAGCCGGCGAGGATGGCGCCGAAC
CACCCACCACATCACGAGCAACATCATCCACACGCGGCCGCGGCCGAGGC
CGTGGCGGTAGAGCCACCACCACTGCCGCTACAACCCGCAAAACCGCCAC
CACAAAAGCAGCACCTGCTACTACTACTTCAAAGAAAACCACAACCTCTA
CTAAAAGCCGTAAACGCCGCACCGTCTCCGACGAAGAAGATGAACAAGAG
GATGTCATAATGCTCGACGATGACGATGATGACGACGACGACAACGCAGC
CACCTCCCTCCCCAACATAGACGAAGAGGACGATGATGACGATGACTCCC
TCTTCGTCAAACAACCCGCCAAATCTACTACCAGTACTAGATCTCGCAGA
ACAACAACAGCAGCAACAGCGAAAGCAACAACACAACGCCGCAAAGCTCC
ATCTCCAGCACCTTCATCCAATACAGTTGGAGGAACCGGACAAGCTACGC
GAAGAACTCGGGGCAAGCAAGCAACCCAGACAACGCTGAATTTTGTAGGC
TCGCAAAGTAGTGTGCGAGGGACGGCGGGGTCTGGGAGATCAATGAGGGC
TACGAGGGCGGCGAGTGAGGATATTGAGGATGATAGTGATGCGTTTGAGC
CGATGGCTAGTAGTGCGAGGCGCAGATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0030870Mre11 complex
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006302double-strand break repair
Vocabulary: Molecular Function
TermDefinition
GO:00084083'-5' exonuclease activity
GO:0016787hydrolase activity
GO:0030145manganese ion binding
GO:0004519endonuclease activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
MUS23ASPNIDRAFT_225671Aspergillus niger ATCC 1015gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_225671-T1.cdsASPNIDRAFT_225671-T1.cdsAspergillus niger ATCC 1015CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_225671-T1.exon1ASPNIDRAFT_225671-T1.exon1Aspergillus niger ATCC 1015exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_225671-T1ASPNIDRAFT_225671-T1-proteinAspergillus niger ATCC 1015polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09262GVX
DBxrefInterPro:IPR041796
DBxrefInterPro:IPR003701
DBxrefInterPro:IPR029052
DBxrefInterPro:IPR004843
DBxrefInterPro:IPR038487
DBxrefInterPro:IPR007281
DBxrefPFAM:PF04152
DBxrefPFAM:PF00149
ProductDouble-strand break repair protein mus-23
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000021.1supercontigACJE01000021.1:1746230..1748608 -
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