You are here

Home

ASPNIDRAFT_37240-T1, ASPNIDRAFT_37240-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_37240-T1
Unique NameASPNIDRAFT_37240-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000010.1:2385804..2387849+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_37240-T1 ID=ASPNIDRAFT_37240-T1|Name=ASPNIDRAFT_37240-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=2046bp|location=Sequence derived from alignment at ACJE01000010.1:2385804..2387849+ (Aspergillus niger ATCC 1015)
ATGGCCCCCAAACCACCCCCGGGCACCTCCGCCAGAGCATGGGACGGAGT
GACGCCCGCCCTGTCGGAATGGGTGCTGGATGCCGTTGCTTCTATGGGCT
TCACCCGCATGACCCCCGTTCAGGCTTCTGCGATTCCCTTGTTCATGGCG
CATAAAGATGTCGTTGTTGAAGCAGTCACAGGAAGTGGAAAGACCTTGTC
TTTCTTGATTCCAGTTGTCGAGAAGCTTTTGCGCCTGGAAGAACCACTCA
AGAAACACCATGTCGGAGCCATCATCATCTCTCCAACCAGGTTGGTCATA
CCGTATACCGTTGAAAAGGTCACGGTCACAGTACTGACAGTTGCGCTTAA
GAGAACTCGCATCGCAGATTTACAACGTTCTGACATCGTTGCTCGCCTTC
CATCCTCCATCCGCCTCCACTCTCAAACCCTCCGATGATGACGATGATGC
ACCTCGTCAGAAATTCCCCTCCTCGACCCTCAAAGTTGTCCCGCAGCTCC
TTCTCGGTGGTTCGACCACTCCGGCTGAGGATTTGAGTACCTTCTTGAAG
CGGTCTCCCAATCTGTTGGTATCTACGCCAGGACGACTGTTGGAGTTGCT
CTCTTCACCCCATGTCCACTGCCCCCAGTCGTCTTTCGAAATGCTTGTCA
TGGATGAAGCGGACAGGCTTCTGGATCTTGGATTCAAGGATACACTACAG
AACATCTTGCGCCGTCTACCCAAGCAACGGCGCACGGGGTTGTTCAGTGC
CAGTGTCAGTGAGGCTGTTGATCAGATTGTTCGGGTTGGTCTGCGCAACC
CCGTCAAAGTCATGGTCAAGGTAAAGGGCACTTCAGGTGTTCAGGATAAA
CGCACACCCGCTAGGTCCGTACCCTTGTTCCTCCATCATTGAAGCATCCT
GTAACTGACAGCCATACTAGCTTGCAAATGACGTACCTCACAGCTCCCCC
AACTCACAAATTCCCTGCCATCAAACACATTCTCTACTCACTCGAGCCCG
CTCCTCAAAAGACCATCATGTTCGTCTCAACATGCTCGGGTGTCGACTAC
CTCTCCGCAATCCTTCCTTCAATCATCGGCGATGACTTCCAACTGATCCC
GCTGCACGGCAAACACCAAGCAAACGTCCGCGAAAAGAACTTCAACCGCT
TCGTCAACTCCCACACCCCCGCCATTCTCCTCACCACCGACGTTGCTTCC
CGTGGACTAGACATCCCCTCAGTCGACGTCGTAATACAGATTGACCCCCC
TTCAGACCCAAAGACTTTCATCCACAGATGCGGCCGTGCCGGACGTGCAG
GCCGCAAAGGTCTGAGTGTGGTCCTTCTTCACCCCGGCCGAGAGGAAGAC
TACGTCTCGTTCCTCGAAGTCCGCAAGACCCCCGTCGCACCGTATCCTCA
CACTCTCACCATAACCGACGCAGACGCCGCTGCAGCCACCGAAACGGCAC
GTAAAGCCGTCCTTGCAGACCGCGCACTACACGACAGGGGCCAGAAGGCC
TTCGTCAGCTGGTTCCGAAGCTACAGCAAGCACCAGGCTAGCAGCATATT
CCGCGTCGCAGACCTCGATTGGGAAGGACTAGGCAATGCATGGGGTCTCC
TGAAGCTTCCCAAGATGCCCGAGTTGAGAAACTTCCAAGGTGACCGGACG
CTCGGCGTGAACTTGGACTGGGAGAACTACGCATACAAGGACAAACAGCG
CGAGAAGCGCCGGAAGGAACAAGTGCAGGAGAATGCCGAGAACGGTGTCG
CGGACGATCAAGCTGCTGGCAAGAAGCGCTCCAGCGAGAGCGTCGCGTGG
AGCAGGAATCTCGACAACCGGAATAAAAAGCTGAAGCGTCGGGAGGCCAA
GCAAGCGCGTCAGCAGAAGGACAAATGGGAGAAGATGACGGAGGAAGAGC
GACAAAAGGTGCTCGAGACGGAGAAGATGCTTGAGCAGATCCGGGTGAAG
AACGAAGAAGAACGACTGCTTAGGCGTGCAGCCAAAGATAAGGAATCTAA
GGCTGCTGGTGGGGATGATGATGATGAGTTCAAGGGGTTTGACTGA
back to top

Coding sequence (CDS) from alignment at ACJE01000010.1:2385804..2387849+

>ASPNIDRAFT_37240-T1 ID=ASPNIDRAFT_37240-T1|Name=ASPNIDRAFT_37240-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=5859bp|location=Sequence derived from alignment at ACJE01000010.1:2385804..2387849+ (Aspergillus niger ATCC 1015)
ATGGCCCCCAAACCACCCCCGGGCACCTCCGCCAGAGCATGGGACGGAGT
GACGCCCGCCCTGTCGGAATGGGTGCTGGATGCCGTTGCTTCTATGGGCT
TCACCCGCATGACCCCCGTTCAGGCTTCTGCGATTCCCTTGTTCATGGCG
CATAAAGATGTCGTTGTTGAAGCAGTCACAGGAAGTGGAAAGACCTTGTC
TTTCTTGATTCCAGTTGTCGAGAAGCTTTTGCGCCTGGAAGAACCACTCA
AGAAACACCATGTCGGAGCCATCATCATCTCTCCAACCAGGTTGGTCATA
CCGTATACCGTTGAAAAGGTCACGGTCACAATTTACAACGTTCTGACATC
GTTGCTCGCCTTCCATCCTCCATCCGCCTCCACTCTCAAACCCTCCGATG
ATGACGATGATGCACCTCGTCAGAAATTCCCCTCCTCGACCCTCAAAGTT
GTCCCGCAGCTCCTTCTCGGTGGTTCGACCACTCCGGCTGAGGATTTGAG
TACCTTCTTGAAGCGGTCTCCCAATCTGTTGGTATCTACGCCAGGACGAC
TGTTGGAGTTGCTCTCTTCACCCCATGTCCACTGCCCCCAGTCGTCTTTC
GAAATGCTTGTCATGGATGAAGCGGACAGGCTTCTGGATCTTGGATTCAA
GGATACACTACAGAACATCTTGCGCCGTCTACCCAAGCAACGGCGCACGG
GGTTGTTCAGTGCCAGTGTCAGTGAGGCTGTTGATCAGATTGTTCGGGTT
GGTCTGCGCAACCCCGTCAAAGTCATGGTCAAGGTAAAGGGCACTTCAGG
TGTTCAGGATAAACGCACACCCGCTAGCTTGCAAATGACGTACCTCACAG
CTCCCCCAACTCACAAATTCCCTGCCATCAAACACATTCTCTACTCACTC
GAGCCCGCTCCTCAAAAGACCATCATGTTCGTCTCAACATGCTCGGGTGT
CGACTACCTCTCCGCAATCCTTCCTTCAATCATCGGCGATGACTTCCAAC
TGATCCCGCTGCACGGCAAACACCAAGCAAACGTCCGCGAAAAGAACTTC
AACCGCTTCGTCAACTCCCACACCCCCGCCATTCTCCTCACCACCGACGT
TGCTTCCCGTGGACTAGACATCCCCTCAGTCGACGTCGTAATACAGATTG
ACCCCCCTTCAGACCCAAAGACTTTCATCCACAGATGCGGCCGTGCCGGA
CGTGCAGGCCGCAAAGGTCTGAGTGTGGTCCTTCTTCACCCCGGCCGAGA
GGAAGACTACGTCTCGTTCCTCGAAGTCCGCAAGACCCCCGTCGCACCGT
ATCCTCACACTCTCACCATAACCGACGCAGACGCCGCTGCAGCCACCGAA
ACGGCACGTAAAGCCGTCCTTGCAGACCGCGCACTACACGACAGGGGCCA
GAAGGCCTTCGTCAGCTGGTTCCGAAGCTACAGCAAGCACCAGGCTAGCA
GCATATTCCGCGTCGCAGACCTCGATTGGGAAGGACTAGGCAATGCATGG
GGTCTCCTGAAGCTTCCCAAGATGCCCGAGTTGAGAAACTTCCAAGGTGA
CCGGACGCTCGGCGTGAACTTGGACTGGGAGAACTACGCATACAAGGACA
AACAGCGCGAGAAGCGCCGGAAGGAACAAGTGCAGGAGAATGCCGAGAAC
GGTGTCGCGGACGATCAAGCTGCTGGCAAGAAGCGCTCCAGCGAGAGCGT
CGCGTGGAGCAGGAATCTCGACAACCGGAATAAAAAGCTGAAGCGTCGGG
AGGCCAAGCAAGCGCGTCAGCAGAAGGACAAATGGGAGAAGATGACGGAG
GAAGAGCGACAAAAGGTGCTCGAGACGGAGAAGATGCTTGAGCAGATCCG
GGTGAAGAACGAAGAAGAACGACTGCTTAGGCGTGCAGCCAAAGATAAGG
AATCTAAGGCTGCTGGTGGGGATGATGATGATGAGTTCAAGGGGTTTGAC
TGAATGGCCCCCAAACCACCCCCGGGCACCTCCGCCAGAGCATGGGACGG
AGTGACGCCCGCCCTGTCGGAATGGGTGCTGGATGCCGTTGCTTCTATGG
GCTTCACCCGCATGACCCCCGTTCAGGCTTCTGCGATTCCCTTGTTCATG
GCGCATAAAGATGTCGTTGTTGAAGCAGTCACAGGAAGTGGAAAGACCTT
GTCTTTCTTGATTCCAGTTGTCGAGAAGCTTTTGCGCCTGGAAGAACCAC
TCAAGAAACACCATGTCGGAGCCATCATCATCTCTCCAACCAGGTTGGTC
ATACCGTATACCGTTGAAAAGGTCACGGTCACAATTTACAACGTTCTGAC
ATCGTTGCTCGCCTTCCATCCTCCATCCGCCTCCACTCTCAAACCCTCCG
ATGATGACGATGATGCACCTCGTCAGAAATTCCCCTCCTCGACCCTCAAA
GTTGTCCCGCAGCTCCTTCTCGGTGGTTCGACCACTCCGGCTGAGGATTT
GAGTACCTTCTTGAAGCGGTCTCCCAATCTGTTGGTATCTACGCCAGGAC
GACTGTTGGAGTTGCTCTCTTCACCCCATGTCCACTGCCCCCAGTCGTCT
TTCGAAATGCTTGTCATGGATGAAGCGGACAGGCTTCTGGATCTTGGATT
CAAGGATACACTACAGAACATCTTGCGCCGTCTACCCAAGCAACGGCGCA
CGGGGTTGTTCAGTGCCAGTGTCAGTGAGGCTGTTGATCAGATTGTTCGG
GTTGGTCTGCGCAACCCCGTCAAAGTCATGGTCAAGGTAAAGGGCACTTC
AGGTGTTCAGGATAAACGCACACCCGCTAGCTTGCAAATGACGTACCTCA
CAGCTCCCCCAACTCACAAATTCCCTGCCATCAAACACATTCTCTACTCA
CTCGAGCCCGCTCCTCAAAAGACCATCATGTTCGTCTCAACATGCTCGGG
TGTCGACTACCTCTCCGCAATCCTTCCTTCAATCATCGGCGATGACTTCC
AACTGATCCCGCTGCACGGCAAACACCAAGCAAACGTCCGCGAAAAGAAC
TTCAACCGCTTCGTCAACTCCCACACCCCCGCCATTCTCCTCACCACCGA
CGTTGCTTCCCGTGGACTAGACATCCCCTCAGTCGACGTCGTAATACAGA
TTGACCCCCCTTCAGACCCAAAGACTTTCATCCACAGATGCGGCCGTGCC
GGACGTGCAGGCCGCAAAGGTCTGAGTGTGGTCCTTCTTCACCCCGGCCG
AGAGGAAGACTACGTCTCGTTCCTCGAAGTCCGCAAGACCCCCGTCGCAC
CGTATCCTCACACTCTCACCATAACCGACGCAGACGCCGCTGCAGCCACC
GAAACGGCACGTAAAGCCGTCCTTGCAGACCGCGCACTACACGACAGGGG
CCAGAAGGCCTTCGTCAGCTGGTTCCGAAGCTACAGCAAGCACCAGGCTA
GCAGCATATTCCGCGTCGCAGACCTCGATTGGGAAGGACTAGGCAATGCA
TGGGGTCTCCTGAAGCTTCCCAAGATGCCCGAGTTGAGAAACTTCCAAGG
TGACCGGACGCTCGGCGTGAACTTGGACTGGGAGAACTACGCATACAAGG
ACAAACAGCGCGAGAAGCGCCGGAAGGAACAAGTGCAGGAGAATGCCGAG
AACGGTGTCGCGGACGATCAAGCTGCTGGCAAGAAGCGCTCCAGCGAGAG
CGTCGCGTGGAGCAGGAATCTCGACAACCGGAATAAAAAGCTGAAGCGTC
GGGAGGCCAAGCAAGCGCGTCAGCAGAAGGACAAATGGGAGAAGATGACG
GAGGAAGAGCGACAAAAGGTGCTCGAGACGGAGAAGATGCTTGAGCAGAT
CCGGGTGAAGAACGAAGAAGAACGACTGCTTAGGCGTGCAGCCAAAGATA
AGGAATCTAAGGCTGCTGGTGGGGATGATGATGATGAGTTCAAGGGGTTT
GACTGAATGGCCCCCAAACCACCCCCGGGCACCTCCGCCAGAGCATGGGA
CGGAGTGACGCCCGCCCTGTCGGAATGGGTGCTGGATGCCGTTGCTTCTA
TGGGCTTCACCCGCATGACCCCCGTTCAGGCTTCTGCGATTCCCTTGTTC
ATGGCGCATAAAGATGTCGTTGTTGAAGCAGTCACAGGAAGTGGAAAGAC
CTTGTCTTTCTTGATTCCAGTTGTCGAGAAGCTTTTGCGCCTGGAAGAAC
CACTCAAGAAACACCATGTCGGAGCCATCATCATCTCTCCAACCAGGTTG
GTCATACCGTATACCGTTGAAAAGGTCACGGTCACAATTTACAACGTTCT
GACATCGTTGCTCGCCTTCCATCCTCCATCCGCCTCCACTCTCAAACCCT
CCGATGATGACGATGATGCACCTCGTCAGAAATTCCCCTCCTCGACCCTC
AAAGTTGTCCCGCAGCTCCTTCTCGGTGGTTCGACCACTCCGGCTGAGGA
TTTGAGTACCTTCTTGAAGCGGTCTCCCAATCTGTTGGTATCTACGCCAG
GACGACTGTTGGAGTTGCTCTCTTCACCCCATGTCCACTGCCCCCAGTCG
TCTTTCGAAATGCTTGTCATGGATGAAGCGGACAGGCTTCTGGATCTTGG
ATTCAAGGATACACTACAGAACATCTTGCGCCGTCTACCCAAGCAACGGC
GCACGGGGTTGTTCAGTGCCAGTGTCAGTGAGGCTGTTGATCAGATTGTT
CGGGTTGGTCTGCGCAACCCCGTCAAAGTCATGGTCAAGGTAAAGGGCAC
TTCAGGTGTTCAGGATAAACGCACACCCGCTAGCTTGCAAATGACGTACC
TCACAGCTCCCCCAACTCACAAATTCCCTGCCATCAAACACATTCTCTAC
TCACTCGAGCCCGCTCCTCAAAAGACCATCATGTTCGTCTCAACATGCTC
GGGTGTCGACTACCTCTCCGCAATCCTTCCTTCAATCATCGGCGATGACT
TCCAACTGATCCCGCTGCACGGCAAACACCAAGCAAACGTCCGCGAAAAG
AACTTCAACCGCTTCGTCAACTCCCACACCCCCGCCATTCTCCTCACCAC
CGACGTTGCTTCCCGTGGACTAGACATCCCCTCAGTCGACGTCGTAATAC
AGATTGACCCCCCTTCAGACCCAAAGACTTTCATCCACAGATGCGGCCGT
GCCGGACGTGCAGGCCGCAAAGGTCTGAGTGTGGTCCTTCTTCACCCCGG
CCGAGAGGAAGACTACGTCTCGTTCCTCGAAGTCCGCAAGACCCCCGTCG
CACCGTATCCTCACACTCTCACCATAACCGACGCAGACGCCGCTGCAGCC
ACCGAAACGGCACGTAAAGCCGTCCTTGCAGACCGCGCACTACACGACAG
GGGCCAGAAGGCCTTCGTCAGCTGGTTCCGAAGCTACAGCAAGCACCAGG
CTAGCAGCATATTCCGCGTCGCAGACCTCGATTGGGAAGGACTAGGCAAT
GCATGGGGTCTCCTGAAGCTTCCCAAGATGCCCGAGTTGAGAAACTTCCA
AGGTGACCGGACGCTCGGCGTGAACTTGGACTGGGAGAACTACGCATACA
AGGACAAACAGCGCGAGAAGCGCCGGAAGGAACAAGTGCAGGAGAATGCC
GAGAACGGTGTCGCGGACGATCAAGCTGCTGGCAAGAAGCGCTCCAGCGA
GAGCGTCGCGTGGAGCAGGAATCTCGACAACCGGAATAAAAAGCTGAAGC
GTCGGGAGGCCAAGCAAGCGCGTCAGCAGAAGGACAAATGGGAGAAGATG
ACGGAGGAAGAGCGACAAAAGGTGCTCGAGACGGAGAAGATGCTTGAGCA
GATCCGGGTGAAGAACGAAGAAGAACGACTGCTTAGGCGTGCAGCCAAAG
ATAAGGAATCTAAGGCTGCTGGTGGGGATGATGATGATGAGTTCAAGGGG
TTTGACTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SPB4ASPNIDRAFT_37240Aspergillus niger ATCC 1015gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_37240-T1.exon1ASPNIDRAFT_37240-T1.exon1Aspergillus niger ATCC 1015exon
ASPNIDRAFT_37240-T1.exon2ASPNIDRAFT_37240-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_37240-T1.exon3ASPNIDRAFT_37240-T1.exon3Aspergillus niger ATCC 1015exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_37240-T1.cdsASPNIDRAFT_37240-T1.cdsAspergillus niger ATCC 1015CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_37240-T1ASPNIDRAFT_37240-T1-proteinAspergillus niger ATCC 1015polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR014014
DBxrefInterPro:IPR000629
DBxrefInterPro:IPR011545
DBxrefInterPro:IPR025313
DBxrefInterPro:IPR001650
DBxrefInterPro:IPR014001
DBxrefPFAM:PF00271
DBxrefPFAM:PF13959
DBxrefPFAM:PF00270
ProductATP-dependent rRNA helicase spb4
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000010.1supercontigACJE01000010.1:2385804..2387849 +
Powered by Drupal