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ASPNIDRAFT_43463-T1, ASPNIDRAFT_43463-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_43463-T1
Unique NameASPNIDRAFT_43463-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000001.1:390364..390689+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_43463-T1 ID=ASPNIDRAFT_43463-T1|Name=ASPNIDRAFT_43463-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=326bp|location=Sequence derived from alignment at ACJE01000001.1:390364..390689+ (Aspergillus niger ATCC 1015)
ATGCCTCGTGCCGTCAGAGGTATCACAACCGCAGCACCGTCCAATCCCAA
CTATCGCTAACGAAGGCCTAAACAGGAGTCCTCATCGAGTGCGATCCGTC
CGTGAAAGCCATTATCCTCAAGTACGACGAAGAAAGACACGACTATATCG
TCGAAGACCTCGACGATGACCGTCATCTGGTCATCAAGGAGAGCCAGCTG
CAGAACCTGAAAGCGAGGTTGACAAAGGTAGGGATGCCGGAATGAGCTGT
TTGAGGCCTGACGCTGATGAGGCAACAGGAGCTTGACGATAAGGTTATGC
AGCCTGATGAGTCGGAATCGGAGTGA
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Coding sequence (CDS) from alignment at ACJE01000001.1:390364..390689+

>ASPNIDRAFT_43463-T1 ID=ASPNIDRAFT_43463-T1|Name=ASPNIDRAFT_43463-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=657bp|location=Sequence derived from alignment at ACJE01000001.1:390364..390689+ (Aspergillus niger ATCC 1015)
ATGCCTCGTGCCGTCAGAGGAGTCCTCATCGAGTGCGATCCGTCCGTGAA
AGCCATTATCCTCAAGTACGACGAAGAAAGACACGACTATATCGTCGAAG
ACCTCGACGATGACCGTCATCTGGTCATCAAGGAGAGCCAGCTGCAGAAC
CTGAAAGCGAGGTTGACAAAGGAGCTTGACGATAAGGTTATGCAGCCTGA
TGAGTCGGAATCGGAGTGAATGCCTCGTGCCGTCAGAGGAGTCCTCATCG
AGTGCGATCCGTCCGTGAAAGCCATTATCCTCAAGTACGACGAAGAAAGA
CACGACTATATCGTCGAAGACCTCGACGATGACCGTCATCTGGTCATCAA
GGAGAGCCAGCTGCAGAACCTGAAAGCGAGGTTGACAAAGGAGCTTGACG
ATAAGGTTATGCAGCCTGATGAGTCGGAATCGGAGTGAATGCCTCGTGCC
GTCAGAGGAGTCCTCATCGAGTGCGATCCGTCCGTGAAAGCCATTATCCT
CAAGTACGACGAAGAAAGACACGACTATATCGTCGAAGACCTCGACGATG
ACCGTCATCTGGTCATCAAGGAGAGCCAGCTGCAGAACCTGAAAGCGAGG
TTGACAAAGGAGCTTGACGATAAGGTTATGCAGCCTGATGAGTCGGAATC
GGAGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000439transcription factor TFIIH core complex
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
GO:0006355regulation of transcription, DNA-templated
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
TFB5ASPNIDRAFT_43463Aspergillus niger ATCC 1015gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_43463-T1.exon1ASPNIDRAFT_43463-T1.exon1Aspergillus niger ATCC 1015exon
ASPNIDRAFT_43463-T1.exon2ASPNIDRAFT_43463-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_43463-T1.exon3ASPNIDRAFT_43463-T1.exon3Aspergillus niger ATCC 1015exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_43463-T1.cdsASPNIDRAFT_43463-T1.cdsAspergillus niger ATCC 1015CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_43463-T1ASPNIDRAFT_43463-T1-proteinAspergillus niger ATCC 1015polypeptide


Properties
Property NameValue
NoteantiSMASH:Cluster_10000011.3
DBxrefInterPro:IPR035935
DBxrefInterPro:IPR009400
DBxrefPFAM:PF06331
ProductTFIIH complex subunit tfb5
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000001.1supercontigACJE01000001.1:390364..390689 +
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