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Sequences
The following sequences are available for this feature:
mRNA from alignment at ACJE01000008.1:1411087..1411567- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >ASPNIDRAFT_48817-T1 ID=ASPNIDRAFT_48817-T1|Name=ASPNIDRAFT_48817-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=481bp|location=Sequence derived from alignment at ACJE01000008.1:1411087..1411567- (Aspergillus niger ATCC 1015)
ATGAGCGCCCAGGCATACTACGAGCTCTATCGCGGGAGCAGGTACGATAG
GGTCTGCGACGACATGTCAGGAAATACCACTAACCCTCCGCAACAGCCTC
GGACTCTCCCTGACCGATACCCTCGATGACCTGATCAACGAAGGACGGAT
CGAGCCCCAGCTCGCCATGAAGATCCTCTCAACTTTCGATCGCGTGATCA
CAGAGGTGCTGGCAGACAAAGTGCGCGCTCGTCTGACTTTCAAGGTACGC
TTGCATATGAGGATAAGGAAGGCTGCGCTTGGAGCAGATGAAGGAGGCGA
ACTGAGGCTGACATGGCTTTTCTTACCACCACAGGGACATCTTGATACCT
ACCGATTCTGCGACGAAGTGTGGACATTCCTTATCAAGGACGTTACTTTC
AAGCTGGATAACCAGACTACGGTCTCCGCGGATAAAGTGAAGATTGTGAG
CTGCAATAGCAAGAGGCCTGGTGAAGCCTAA back to topCoding sequence (CDS) from alignment at ACJE01000008.1:1411087..1411567- >ASPNIDRAFT_48817-T1 ID=ASPNIDRAFT_48817-T1|Name=ASPNIDRAFT_48817-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=1008bp|location=Sequence derived from alignment at ACJE01000008.1:1411087..1411567- (Aspergillus niger ATCC 1015)
GGACATCTTGATACCTACCGATTCTGCGACGAAGTGTGGACATTCCTTAT
CAAGGACGTTACTTTCAAGCTGGATAACCAGACTACGGTCTCCGCGGATA
AAGTGAAGATTGTGAGCTGCAATAGCAAGAGGCCTGGTGAAGCCTAACCT
CGGACTCTCCCTGACCGATACCCTCGATGACCTGATCAACGAAGGACGGA
TCGAGCCCCAGCTCGCCATGAAGATCCTCTCAACTTTCGATCGCGTGATC
ACAGAGGTGCTGGCAGACAAAGTGCGCGCTCGTCTGACTTTCAAGATGAG
CGCCCAGGCATACTACGAGCTCTATCGCGGGAGCAGGGACATCTTGATAC
CTACCGATTCTGCGACGAAGTGTGGACATTCCTTATCAAGGACGTTACTT
TCAAGCTGGATAACCAGACTACGGTCTCCGCGGATAAAGTGAAGATTGTG
AGCTGCAATAGCAAGAGGCCTGGTGAAGCCTAACCTCGGACTCTCCCTGA
CCGATACCCTCGATGACCTGATCAACGAAGGACGGATCGAGCCCCAGCTC
GCCATGAAGATCCTCTCAACTTTCGATCGCGTGATCACAGAGGTGCTGGC
AGACAAAGTGCGCGCTCGTCTGACTTTCAAGATGAGCGCCCAGGCATACT
ACGAGCTCTATCGCGGGAGCAGGGACATCTTGATACCTACCGATTCTGCG
ACGAAGTGTGGACATTCCTTATCAAGGACGTTACTTTCAAGCTGGATAAC
CAGACTACGGTCTCCGCGGATAAAGTGAAGATTGTGAGCTGCAATAGCAA
GAGGCCTGGTGAAGCCTAACCTCGGACTCTCCCTGACCGATACCCTCGAT
GACCTGATCAACGAAGGACGGATCGAGCCCCAGCTCGCCATGAAGATCCT
CTCAACTTTCGATCGCGTGATCACAGAGGTGCTGGCAGACAAAGTGCGCG
CTCGTCTGACTTTCAAGATGAGCGCCCAGGCATACTACGAGCTCTATCGC
GGGAGCAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005672 | transcription factor TFIIA complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006367 | transcription initiation from RNA polymerase II promoter |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09265ER6 |
| DBxref | InterPro:IPR003194 |
| DBxref | InterPro:IPR015871 |
| DBxref | InterPro:IPR009088 |
| DBxref | InterPro:IPR015872 |
| DBxref | InterPro:IPR009083 |
| DBxref | PFAM:PF02268 |
| DBxref | PFAM:PF02751 |
| Product | Transcription initiation factor IIA small chain (TFIIA 13.5 kDa subunit) |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ACJE01000008.1 | supercontig | ACJE01000008.1:1411087..1411567 - |
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