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Sequences
The following sequences are available for this feature:
mRNA from alignment at ACJE01000006.1:528568..529567- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >ASPNIDRAFT_49678-T1 ID=ASPNIDRAFT_49678-T1|Name=ASPNIDRAFT_49678-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=1000bp|location=Sequence derived from alignment at ACJE01000006.1:528568..529567- (Aspergillus niger ATCC 1015)
ATGAACAAAGAAGCATTGCTCTCCGTCACTGAGCGCGACTTCATCCTCAA
TGCGCTGCGCGAGGATGTACGACTGGACGGTCGCGGTTTCGACCAGCTAC
GTCCGCTGAATGTGTCATTCGGGGAGGAGTATGGACATGTGAAGGTGCAG
CTCGGCAAAACCAGGTAGGTAGACTCATCGTTCAGCTTGCTTCAACAACA
CTAACTGATTCTTTTCTGCTGCAGCCTCATTGTCCGTATCTCAGCTGAAG
TCACAAAACCTCACGATGATCGTCCGTTCGACGGTCTTTTCACAATCGCC
ATGGAGCTGACTGCCATGGGCTCCCCCGCTTGGGACAATGGCCGGTATGG
ATATTCTCATCAAGCCGCGAGCGAGCAATAACTCAGCTGACCATTTCTGC
TTCAGACAAGGAGACTTTGAAACATATGTCACCAATGTCCTCGACCGTGT
CGTTCGCCATTCCAACGCCCTGGACACCGAGTCCCTCTGTATCCTCAAGG
GTGTCAGCTGCTGGAGCATCCGCGCGGACGTCCACGTTACCGATTACGAT
GGCAATCTGATTGATGCGGCTTGTATTGGTATCATGGCTGGATTGCAGCA
TTTCCGCCGTCAAGACGCTGTAGTCAAGGATGGCCAGGTGATTGTGTACG
GACTCGATGAACGAGTTCCTGTCGCATTGAACATTACACATAAGCCGCTG
TCTGTTACTTTCCACACATTCGATGAAGGAAAACGGGTCATCATTGATGC
AACTCGGAAGGAGGAGCAAGCAGCGGAAGCTGACGTCGTTATTGGCATCA
ACAACGCTGGTGATGTGTGCTTCGTCTCCAAGTTCTCCGGATCGCCAGTG
GACGCGATGGTCTTTGTGGATAAGACTTCCGTTGCCCTGGAGAAGGTCAA
GGAGATCAATGCAATCATTGATAAGGCGTTACAAGCCGATCTCTCGAAAC
GAGCGAAGATTGGCATGGCTGAGGAGTCGCGGGCGGAAAACGATCGGTGA
back to topCoding sequence (CDS) from alignment at ACJE01000006.1:528568..529567- >ASPNIDRAFT_49678-T1 ID=ASPNIDRAFT_49678-T1|Name=ASPNIDRAFT_49678-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=2637bp|location=Sequence derived from alignment at ACJE01000006.1:528568..529567- (Aspergillus niger ATCC 1015)
ACAAGGAGACTTTGAAACATATGTCACCAATGTCCTCGACCGTGTCGTTC
GCCATTCCAACGCCCTGGACACCGAGTCCCTCTGTATCCTCAAGGGTGTC
AGCTGCTGGAGCATCCGCGCGGACGTCCACGTTACCGATTACGATGGCAA
TCTGATTGATGCGGCTTGTATTGGTATCATGGCTGGATTGCAGCATTTCC
GCCGTCAAGACGCTGTAGTCAAGGATGGCCAGGTGATTGTGTACGGACTC
GATGAACGAGTTCCTGTCGCATTGAACATTACACATAAGCCGCTGTCTGT
TACTTTCCACACATTCGATGAAGGAAAACGGGTCATCATTGATGCAACTC
GGAAGGAGGAGCAAGCAGCGGAAGCTGACGTCGTTATTGGCATCAACAAC
GCTGGTGATGTGTGCTTCGTCTCCAAGTTCTCCGGATCGCCAGTGGACGC
GATGGTCTTTGTGGATAAGACTTCCGTTGCCCTGGAGAAGGTCAAGGAGA
TCAATGCAATCATTGATAAGGCGTTACAAGCCGATCTCTCGAAACGAGCG
AAGATTGGCATGGCTGAGGAGTCGCGGGCGGAAAACGATCGGTGACCTCA
TTGTCCGTATCTCAGCTGAAGTCACAAAACCTCACGATGATCGTCCGTTC
GACGGTCTTTTCACAATCGCCATGGAGCTGACTGCCATGGGCTCCCCCGC
TTGGGACAATGGCCGATGAACAAAGAAGCATTGCTCTCCGTCACTGAGCG
CGACTTCATCCTCAATGCGCTGCGCGAGGATGTACGACTGGACGGTCGCG
GTTTCGACCAGCTACGTCCGCTGAATGTGTCATTCGGGGAGGAGTATGGA
CATGTGAAGGTGCAGCTCGGCAAAACCAGACAAGGAGACTTTGAAACATA
TGTCACCAATGTCCTCGACCGTGTCGTTCGCCATTCCAACGCCCTGGACA
CCGAGTCCCTCTGTATCCTCAAGGGTGTCAGCTGCTGGAGCATCCGCGCG
GACGTCCACGTTACCGATTACGATGGCAATCTGATTGATGCGGCTTGTAT
TGGTATCATGGCTGGATTGCAGCATTTCCGCCGTCAAGACGCTGTAGTCA
AGGATGGCCAGGTGATTGTGTACGGACTCGATGAACGAGTTCCTGTCGCA
TTGAACATTACACATAAGCCGCTGTCTGTTACTTTCCACACATTCGATGA
AGGAAAACGGGTCATCATTGATGCAACTCGGAAGGAGGAGCAAGCAGCGG
AAGCTGACGTCGTTATTGGCATCAACAACGCTGGTGATGTGTGCTTCGTC
TCCAAGTTCTCCGGATCGCCAGTGGACGCGATGGTCTTTGTGGATAAGAC
TTCCGTTGCCCTGGAGAAGGTCAAGGAGATCAATGCAATCATTGATAAGG
CGTTACAAGCCGATCTCTCGAAACGAGCGAAGATTGGCATGGCTGAGGAG
TCGCGGGCGGAAAACGATCGGTGACCTCATTGTCCGTATCTCAGCTGAAG
TCACAAAACCTCACGATGATCGTCCGTTCGACGGTCTTTTCACAATCGCC
ATGGAGCTGACTGCCATGGGCTCCCCCGCTTGGGACAATGGCCGATGAAC
AAAGAAGCATTGCTCTCCGTCACTGAGCGCGACTTCATCCTCAATGCGCT
GCGCGAGGATGTACGACTGGACGGTCGCGGTTTCGACCAGCTACGTCCGC
TGAATGTGTCATTCGGGGAGGAGTATGGACATGTGAAGGTGCAGCTCGGC
AAAACCAGACAAGGAGACTTTGAAACATATGTCACCAATGTCCTCGACCG
TGTCGTTCGCCATTCCAACGCCCTGGACACCGAGTCCCTCTGTATCCTCA
AGGGTGTCAGCTGCTGGAGCATCCGCGCGGACGTCCACGTTACCGATTAC
GATGGCAATCTGATTGATGCGGCTTGTATTGGTATCATGGCTGGATTGCA
GCATTTCCGCCGTCAAGACGCTGTAGTCAAGGATGGCCAGGTGATTGTGT
ACGGACTCGATGAACGAGTTCCTGTCGCATTGAACATTACACATAAGCCG
CTGTCTGTTACTTTCCACACATTCGATGAAGGAAAACGGGTCATCATTGA
TGCAACTCGGAAGGAGGAGCAAGCAGCGGAAGCTGACGTCGTTATTGGCA
TCAACAACGCTGGTGATGTGTGCTTCGTCTCCAAGTTCTCCGGATCGCCA
GTGGACGCGATGGTCTTTGTGGATAAGACTTCCGTTGCCCTGGAGAAGGT
CAAGGAGATCAATGCAATCATTGATAAGGCGTTACAAGCCGATCTCTCGA
AACGAGCGAAGATTGGCATGGCTGAGGAGTCGCGGGCGGAAAACGATCGG
TGACCTCATTGTCCGTATCTCAGCTGAAGTCACAAAACCTCACGATGATC
GTCCGTTCGACGGTCTTTTCACAATCGCCATGGAGCTGACTGCCATGGGC
TCCCCCGCTTGGGACAATGGCCGATGAACAAAGAAGCATTGCTCTCCGTC
ACTGAGCGCGACTTCATCCTCAATGCGCTGCGCGAGGATGTACGACTGGA
CGGTCGCGGTTTCGACCAGCTACGTCCGCTGAATGTGTCATTCGGGGAGG
AGTATGGACATGTGAAGGTGCAGCTCGGCAAAACCAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0000178 | exosome (RNase complex) |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006396 | RNA processing |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264398 |
| DBxref | InterPro:IPR036345 |
| DBxref | InterPro:IPR020568 |
| DBxref | InterPro:IPR033100 |
| DBxref | InterPro:IPR027408 |
| DBxref | InterPro:IPR001247 |
| DBxref | InterPro:IPR015847 |
| DBxref | PFAM:PF03725 |
| DBxref | PFAM:PF01138 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| ACJE01000006.1 | supercontig | ACJE01000006.1:528568..529567 - |
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