You are here

Home

ASPNIDRAFT_51860-T1, ASPNIDRAFT_51860-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_51860-T1
Unique NameASPNIDRAFT_51860-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000004.1:2118236..2119153-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_51860-T1 ID=ASPNIDRAFT_51860-T1|Name=ASPNIDRAFT_51860-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=918bp|location=Sequence derived from alignment at ACJE01000004.1:2118236..2119153- (Aspergillus niger ATCC 1015)
CCCCGAGCTGTCTGTGCCTATCTAATCGATCTTCCAACCACGCGCAATAT
CCATCGCCATGGCCCAGGAAATCCAAAAAGAGAACAATGACCATTTGGTC
CAGTCGTCTGACCCCGAGCATCCCGCCAACTTGATCCCTGATCTCTGTCG
CCGGTTCTACAATTGGGGCTGGGTCACCGGTACTGGTGGCGGGGTAAGCA
CTGTTGCACCTCCAGGACGATCATGAGTAATCGCTAATCGATTCCTATTT
ATTTCTGCATTAGACTTCCATTCGTCGCGATAATCATATATTCATTGCTC
CTTCTGGCGTGCAGAAGGAGATGATGAAATCCGACAACATCTTTGTCTTG
GAATTCCCTACGCCCAAGTATCCTCCGTCCGATCGCAAATATATTCGCAA
GCCGCTCGACCTGAAGCCCTCGGCATGCACGCCACTGTTCCTTGCCGCTT
TTGAGCGCGGGGCTGGCTGCTGCATCCACACTCATTCTCAGTGGGCGGTC
CTGGTGACCCTCCTGGTTGAGCGCGAGAAGGGCCCGAACGCCTGCTTCGA
AATTAGCAACATTGAACAGATTAAGGGTATTCCCCGTGGAAAGGGCAAGG
GCATGATGGGTTTCTACGATACTCTTCGTATCCCGATTATTGATAACACC
GCGTTTGAGGAAGATCTCACGGGAAGCTTGGAGAAGGCGATGGAGGAGTA
CCCTGACACCTATGCTGTCCTTGTGCGGAGACACGGAATGTAAGTTTCAT
TTTTTTAACCCTTAACTTTCGAGTGACGGCGGGCTTATGTGTGTGTATAG
TTATGTGTGGGGAGACGACGTCGTCAAAGCCAAGACTCAGTGCGAGAGTC
TAGACTACCTGTTCCAGCTTGCTGTTGAGATGCACAAGCTTGGCCTTCCG
TGGGTGAAAGAAACGTAG
back to top

Coding sequence (CDS) from alignment at ACJE01000004.1:2118236..2119153-

>ASPNIDRAFT_51860-T1 ID=ASPNIDRAFT_51860-T1|Name=ASPNIDRAFT_51860-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=2187bp|location=Sequence derived from alignment at ACJE01000004.1:2118236..2119153- (Aspergillus niger ATCC 1015)
TTATGTGTGGGGAGACGACGTCGTCAAAGCCAAGACTCAGTGCGAGAGTC
TAGACTACCTGTTCCAGCTTGCTGTTGAGATGCACAAGCTTGGCCTTCCG
TGGGTGAAAGAAACGTAGACTTCCATTCGTCGCGATAATCATATATTCAT
TGCTCCTTCTGGCGTGCAGAAGGAGATGATGAAATCCGACAACATCTTTG
TCTTGGAATTCCCTACGCCCAAGTATCCTCCGTCCGATCGCAAATATATT
CGCAAGCCGCTCGACCTGAAGCCCTCGGCATGCACGCCACTGTTCCTTGC
CGCTTTTGAGCGCGGGGCTGGCTGCTGCATCCACACTCATTCTCAGTGGG
CGGTCCTGGTGACCCTCCTGGTTGAGCGCGAGAAGGGCCCGAACGCCTGC
TTCGAAATTAGCAACATTGAACAGATTAAGGGTATTCCCCGTGGAAAGGG
CAAGGGCATGATGGGTTTCTACGATACTCTTCGTATCCCGATTATTGATA
ACACCGCGTTTGAGGAAGATCTCACGGGAAGCTTGGAGAAGGCGATGGAG
GAGTACCCTGACACCTATGCTGTCCTTGTGCGGAGACACGGAATATGGCC
CAGGAAATCCAAAAAGAGAACAATGACCATTTGGTCCAGTCGTCTGACCC
CGAGCATCCCGCCAACTTGATCCCTGATCTCTGTCGCCGGTTCTACAATT
GGGGCTGGGTCACCGGTACTGGTGGCGGGTTATGTGTGGGGAGACGACGT
CGTCAAAGCCAAGACTCAGTGCGAGAGTCTAGACTACCTGTTCCAGCTTG
CTGTTGAGATGCACAAGCTTGGCCTTCCGTGGGTGAAAGAAACGTAGACT
TCCATTCGTCGCGATAATCATATATTCATTGCTCCTTCTGGCGTGCAGAA
GGAGATGATGAAATCCGACAACATCTTTGTCTTGGAATTCCCTACGCCCA
AGTATCCTCCGTCCGATCGCAAATATATTCGCAAGCCGCTCGACCTGAAG
CCCTCGGCATGCACGCCACTGTTCCTTGCCGCTTTTGAGCGCGGGGCTGG
CTGCTGCATCCACACTCATTCTCAGTGGGCGGTCCTGGTGACCCTCCTGG
TTGAGCGCGAGAAGGGCCCGAACGCCTGCTTCGAAATTAGCAACATTGAA
CAGATTAAGGGTATTCCCCGTGGAAAGGGCAAGGGCATGATGGGTTTCTA
CGATACTCTTCGTATCCCGATTATTGATAACACCGCGTTTGAGGAAGATC
TCACGGGAAGCTTGGAGAAGGCGATGGAGGAGTACCCTGACACCTATGCT
GTCCTTGTGCGGAGACACGGAATATGGCCCAGGAAATCCAAAAAGAGAAC
AATGACCATTTGGTCCAGTCGTCTGACCCCGAGCATCCCGCCAACTTGAT
CCCTGATCTCTGTCGCCGGTTCTACAATTGGGGCTGGGTCACCGGTACTG
GTGGCGGGTTATGTGTGGGGAGACGACGTCGTCAAAGCCAAGACTCAGTG
CGAGAGTCTAGACTACCTGTTCCAGCTTGCTGTTGAGATGCACAAGCTTG
GCCTTCCGTGGGTGAAAGAAACGTAGACTTCCATTCGTCGCGATAATCAT
ATATTCATTGCTCCTTCTGGCGTGCAGAAGGAGATGATGAAATCCGACAA
CATCTTTGTCTTGGAATTCCCTACGCCCAAGTATCCTCCGTCCGATCGCA
AATATATTCGCAAGCCGCTCGACCTGAAGCCCTCGGCATGCACGCCACTG
TTCCTTGCCGCTTTTGAGCGCGGGGCTGGCTGCTGCATCCACACTCATTC
TCAGTGGGCGGTCCTGGTGACCCTCCTGGTTGAGCGCGAGAAGGGCCCGA
ACGCCTGCTTCGAAATTAGCAACATTGAACAGATTAAGGGTATTCCCCGT
GGAAAGGGCAAGGGCATGATGGGTTTCTACGATACTCTTCGTATCCCGAT
TATTGATAACACCGCGTTTGAGGAAGATCTCACGGGAAGCTTGGAGAAGG
CGATGGAGGAGTACCCTGACACCTATGCTGTCCTTGTGCGGAGACACGGA
ATATGGCCCAGGAAATCCAAAAAGAGAACAATGACCATTTGGTCCAGTCG
TCTGACCCCGAGCATCCCGCCAACTTGATCCCTGATCTCTGTCGCCGGTT
CTACAATTGGGGCTGGGTCACCGGTACTGGTGGCGGG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Vocabulary: Biological Process
TermDefinition
GO:0019509L-methionine salvage from methylthioadenosine
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
MDE1ASPNIDRAFT_51860Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_51860-T1ASPNIDRAFT_51860-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_51860-T1.cdsASPNIDRAFT_51860-T1.cdsAspergillus niger ATCC 1015CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_51860-T1.exon3ASPNIDRAFT_51860-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_51860-T1.exon2ASPNIDRAFT_51860-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_51860-T1.exon1ASPNIDRAFT_51860-T1.exon1Aspergillus niger ATCC 1015exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_51860-T1.utr5p1ASPNIDRAFT_51860-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR027514
DBxrefInterPro:IPR036409
DBxrefInterPro:IPR017714
DBxrefInterPro:IPR001303
DBxrefPFAM:PF00596
ProductMethylthioribulose-1-phosphate dehydratase
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000004.1supercontigACJE01000004.1:2118236..2119153 -
Powered by Drupal