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ASPNIDRAFT_53113-T1, ASPNIDRAFT_53113-T1 (mRNA) Aspergillus niger ATCC 1015

Overview
NameASPNIDRAFT_53113-T1
Unique NameASPNIDRAFT_53113-T1
TypemRNA
OrganismAspergillus niger ATCC 1015
Sequences
The following sequences are available for this feature:

mRNA from alignment at ACJE01000019.1:2792752..2793593-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>ASPNIDRAFT_53113-T1 ID=ASPNIDRAFT_53113-T1|Name=ASPNIDRAFT_53113-T1|organism=Aspergillus niger ATCC 1015|type=mRNA|length=842bp|location=Sequence derived from alignment at ACJE01000019.1:2792752..2793593- (Aspergillus niger ATCC 1015)
CGCCATCGTCACTTGTTAACTACAACTCCCTAATAAATTAAACACCTTCA
AAAGGAAAAAAAAAAAACCTCACATACCATCCAACAAAATGACTGGAGGC
AAATCTGGAGGCAAGGCCAGCGGCAGCAAGAACGCCCAATCGTATGCCAC
CCGTTCATCTCGAGCGTCATCTCGAGATATTCGTTAAATATACTGACCCG
GTCACAGCCGTTCGTCCAAGGCCGGTCTCGCCTTTCCCGTTGGACGTGTT
CATCGTCTCCTCCGCAAGGGCAACTACGCTCAGCGTGTTGGTGCCGGTTA
GTGATACTCGTTTTAACCCAAAAGGCAACTCTAACCTCATGATAATAGGT
GCTCCCGTTTACCTCGCTGCCGTTCTTGAGTATCTCGCCGCCGAAATTCT
TGAATTGGCTGGCAACGCTGCTCGCGATAACAAGAAGACCCGTATCATTC
CCCGTCACCTTCAGCTCGCCATCCGCAACGATGAGGAACTGAACAAGCTC
CTGGGTCATGTCACCATTGCCCAGGGTGGTGTCCTCCCCAACATCCACCA
GAGTAAGTATTGGCTCCATTTGTTAATTCAGCATGTGGTACTGACAATAC
ATAGACCTTCTGCCCAAGAAGACCCCCAAGAGTGGAAAGGGCCCGGGAAG
CCAGGAGCTGTAAACAATTTCTTTCTAATTTGGGTTCTCTGATTCGGCGC
GGTTTGGTTCTCTTATTGATGTGATAACGGGGTTCTGGTCGGAACGTTTA
TGGCTCTGCGATTTCTTTTTTTCTAGTTTCCACAGTTTATGGTTGTACAT
TATGTCTACGGACATGGAATGATACCGACAGCATTTTCACTG
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Coding sequence (CDS) from alignment at ACJE01000019.1:2792752..2793593-

>ASPNIDRAFT_53113-T1 ID=ASPNIDRAFT_53113-T1|Name=ASPNIDRAFT_53113-T1|organism=Aspergillus niger ATCC 1015|type=CDS|length=1620bp|location=Sequence derived from alignment at ACJE01000019.1:2792752..2793593- (Aspergillus niger ATCC 1015)
ACCTTCTGCCCAAGAAGACCCCCAAGAGTGGAAAGGGCCCGGGAAGCCAG
GAGCTGTAAGTGCTCCCGTTTACCTCGCTGCCGTTCTTGAGTATCTCGCC
GCCGAAATTCTTGAATTGGCTGGCAACGCTGCTCGCGATAACAAGAAGAC
CCGTATCATTCCCCGTCACCTTCAGCTCGCCATCCGCAACGATGAGGAAC
TGAACAAGCTCCTGGGTCATGTCACCATTGCCCAGGGTGGTGTCCTCCCC
AACATCCACCAGACCGTTCGTCCAAGGCCGGTCTCGCCTTTCCCGTTGGA
CGTGTTCATCGTCTCCTCCGCAAGGGCAACTACGCTCAGCGTGTTGGTGC
CGATGACTGGAGGCAAATCTGGAGGCAAGGCCAGCGGCAGCAAGAACGCC
CAATCACCTTCTGCCCAAGAAGACCCCCAAGAGTGGAAAGGGCCCGGGAA
GCCAGGAGCTGTAAGTGCTCCCGTTTACCTCGCTGCCGTTCTTGAGTATC
TCGCCGCCGAAATTCTTGAATTGGCTGGCAACGCTGCTCGCGATAACAAG
AAGACCCGTATCATTCCCCGTCACCTTCAGCTCGCCATCCGCAACGATGA
GGAACTGAACAAGCTCCTGGGTCATGTCACCATTGCCCAGGGTGGTGTCC
TCCCCAACATCCACCAGACCGTTCGTCCAAGGCCGGTCTCGCCTTTCCCG
TTGGACGTGTTCATCGTCTCCTCCGCAAGGGCAACTACGCTCAGCGTGTT
GGTGCCGATGACTGGAGGCAAATCTGGAGGCAAGGCCAGCGGCAGCAAGA
ACGCCCAATCACCTTCTGCCCAAGAAGACCCCCAAGAGTGGAAAGGGCCC
GGGAAGCCAGGAGCTGTAAGTGCTCCCGTTTACCTCGCTGCCGTTCTTGA
GTATCTCGCCGCCGAAATTCTTGAATTGGCTGGCAACGCTGCTCGCGATA
ACAAGAAGACCCGTATCATTCCCCGTCACCTTCAGCTCGCCATCCGCAAC
GATGAGGAACTGAACAAGCTCCTGGGTCATGTCACCATTGCCCAGGGTGG
TGTCCTCCCCAACATCCACCAGACCGTTCGTCCAAGGCCGGTCTCGCCTT
TCCCGTTGGACGTGTTCATCGTCTCCTCCGCAAGGGCAACTACGCTCAGC
GTGTTGGTGCCGATGACTGGAGGCAAATCTGGAGGCAAGGCCAGCGGCAG
CAAGAACGCCCAATCACCTTCTGCCCAAGAAGACCCCCAAGAGTGGAAAG
GGCCCGGGAAGCCAGGAGCTGTAAGTGCTCCCGTTTACCTCGCTGCCGTT
CTTGAGTATCTCGCCGCCGAAATTCTTGAATTGGCTGGCAACGCTGCTCG
CGATAACAAGAAGACCCGTATCATTCCCCGTCACCTTCAGCTCGCCATCC
GCAACGATGAGGAACTGAACAAGCTCCTGGGTCATGTCACCATTGCCCAG
GGTGGTGTCCTCCCCAACATCCACCAGACCGTTCGTCCAAGGCCGGTCTC
GCCTTTCCCGTTGGACGTGTTCATCGTCTCCTCCGCAAGGGCAACTACGC
TCAGCGTGTTGGTGCCGATGACTGGAGGCAAATCTGGAGGCAAGGCCAGC
GGCAGCAAGAACGCCCAATC
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000786nucleosome
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0046982protein heterodimerization activity
GO:0003677DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ASPNIDRAFT_53113ASPNIDRAFT_53113Aspergillus niger ATCC 1015gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_53113-T1ASPNIDRAFT_53113-T1-proteinAspergillus niger ATCC 1015polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_53113-T1.cdsASPNIDRAFT_53113-T1.cdsAspergillus niger ATCC 1015CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_53113-T1.utr3p1ASPNIDRAFT_53113-T1.utr3p1Aspergillus niger ATCC 1015three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_53113-T1.exon4ASPNIDRAFT_53113-T1.exon4Aspergillus niger ATCC 1015exon
ASPNIDRAFT_53113-T1.exon3ASPNIDRAFT_53113-T1.exon3Aspergillus niger ATCC 1015exon
ASPNIDRAFT_53113-T1.exon2ASPNIDRAFT_53113-T1.exon2Aspergillus niger ATCC 1015exon
ASPNIDRAFT_53113-T1.exon1ASPNIDRAFT_53113-T1.exon1Aspergillus niger ATCC 1015exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ASPNIDRAFT_53113-T1.utr5p1ASPNIDRAFT_53113-T1.utr5p1Aspergillus niger ATCC 1015five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR032458
DBxrefInterPro:IPR009072
DBxrefInterPro:IPR032454
DBxrefInterPro:IPR007125
DBxrefInterPro:IPR002119
DBxrefPFAM:PF16211
DBxrefPFAM:PF00125
DBxrefPFAM:PF00808
ProductH2A histone 2A protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 1015 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ACJE01000019.1supercontigACJE01000019.1:2792752..2793593 -
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