You are here

Home

ATCC10864_000889-T1, ATCC10864_000889-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_000889-T1
Unique NameATCC10864_000889-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000019:273661..274760+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_000889-T1 ID=ATCC10864_000889-T1|Name=ATCC10864_000889-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1100bp|location=Sequence derived from alignment at MCQH01000019:273661..274760+ (Aspergillus niger ATCC 10864)
ATGGCTGACGAGCACTACGTGAGTTTTCCGATAACTAAAGACATGTTGAA
GAGGACTAGGAAGAGTTTGAACTAACGTTCTTTTGCCTACAGAACGCCGA
GGAGGCTGCCGGTACGTTTGAAATTTTTTTGCCTGAACCACCCTTTCCTG
CCCTGGACCCCGGAAACAGAGACGAATTCGCGTTGTGGGAAACGGTATTT
TGGCTGGATATACGATATGATATGGACATAATTCGATGATGCGACACTTG
GAAATTTTTGAGGAAGGGATGGGGGGGCAACGGACCGAATTCTCTGTCGA
CGTTTCTATTCTTGCTTTTGCCACACCAACTACGAGAACCACGCAGCAGT
GATTGAAGGGAACACAAGGCGCTGACGTATCCGGGAAACAGAGATCAAGA
AGAGAAGACAGTTCCGCAAGTTCACCTACCGCGGTATTGACCTCGACCAG
TACGTTTCACCATGAATATCTATCATACCCACACTGCACTCCGAACCGAC
GGCCTCGACTCCGAACGAGCGATATCAGCAATATGGACATTTCTGGATAT
TTGCGGAATATCCTCGTGGGAGTTGACGGCCGAAGGAAGGAAATATGACA
ATCTATCGAAAAGACCGACGGGAAATATGTGGAATGGTATCTGACCTGTT
TATCTGCACAGGCTCCTTGACCTCTCCTCCGAACAGCTCCGTGATGTCGT
TCACGCCCGCGCTCGTCGTCGCTTCAACCGCGGTCTGAAGCGCAAGCCCA
TGGGTCTCATCAAGAAGCTCCGCAAGGCCAAGCAGGAGGCTCGCCCCAAC
GAGAAGCCCGACCTCGTCAAGACCCACCTCCGTGACATGATCGTTGTCCC
CGAGATGATCGGCAGCGTCATCGGTATCTACTCCGGTAAGGAGTTCAACC
AGATCGAAGTCAAGCCCGAGATGGTTGGCCACTACCTGGGTGAATTCTCT
ATCTCCTAGTACGTACCCCCAATAGCCGTATCCCCCGCGAGCGAATCCAA
ATGAATATGGTATGTCTAACAACCACACAGCAAGCCCGTCAAGCACGGTC
GTCCCGGTATCGGTGCCACCCACTCTTCCCGTTTCATTCCCCTCAAGTAA
back to top

Coding sequence (CDS) from alignment at MCQH01000019:273661..274760+

>ATCC10864_000889-T1 ID=ATCC10864_000889-T1|Name=ATCC10864_000889-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=2310bp|location=Sequence derived from alignment at MCQH01000019:273661..274760+ (Aspergillus niger ATCC 10864)
ATGGCTGACGAGCACTACAACGCCGAGGAGGCTGCCGAGATCAAGAAGAG
AAGACAGTTCCGCAAGTTCACCTACCGCGGTATTGACCTCGACCAGCTCC
TTGACCTCTCCTCCGAACAGCTCCGTGATGTCGTTCACGCCCGCGCTCGT
CGTCGCTTCAACCGCGGTCTGAAGCGCAAGCCCATGGGTCTCATCAAGAA
GCTCCGCAAGGCCAAGCAGGAGGCTCGCCCCAACGAGAAGCCCGACCTCG
TCAAGACCCACCTCCGTGACATGATCGTTGTCCCCGAGATGATCGGCAGC
GTCATCGGTATCTACTCCGGTAAGGAGTTCAACCAGATCGAAGTCAAGCC
CGAGATGGTTGGCCACTACCTGGGTGAATTCTCTATCTCCTACAAGCCCG
TCAAGCACGGTCGTCCCGGTATCGGTGCCACCCACTCTTCCCGTTTCATT
CCCCTCAAGTAAATGGCTGACGAGCACTACAACGCCGAGGAGGCTGCCGA
GATCAAGAAGAGAAGACAGTTCCGCAAGTTCACCTACCGCGGTATTGACC
TCGACCAGCTCCTTGACCTCTCCTCCGAACAGCTCCGTGATGTCGTTCAC
GCCCGCGCTCGTCGTCGCTTCAACCGCGGTCTGAAGCGCAAGCCCATGGG
TCTCATCAAGAAGCTCCGCAAGGCCAAGCAGGAGGCTCGCCCCAACGAGA
AGCCCGACCTCGTCAAGACCCACCTCCGTGACATGATCGTTGTCCCCGAG
ATGATCGGCAGCGTCATCGGTATCTACTCCGGTAAGGAGTTCAACCAGAT
CGAAGTCAAGCCCGAGATGGTTGGCCACTACCTGGGTGAATTCTCTATCT
CCTACAAGCCCGTCAAGCACGGTCGTCCCGGTATCGGTGCCACCCACTCT
TCCCGTTTCATTCCCCTCAAGTAAATGGCTGACGAGCACTACAACGCCGA
GGAGGCTGCCGAGATCAAGAAGAGAAGACAGTTCCGCAAGTTCACCTACC
GCGGTATTGACCTCGACCAGCTCCTTGACCTCTCCTCCGAACAGCTCCGT
GATGTCGTTCACGCCCGCGCTCGTCGTCGCTTCAACCGCGGTCTGAAGCG
CAAGCCCATGGGTCTCATCAAGAAGCTCCGCAAGGCCAAGCAGGAGGCTC
GCCCCAACGAGAAGCCCGACCTCGTCAAGACCCACCTCCGTGACATGATC
GTTGTCCCCGAGATGATCGGCAGCGTCATCGGTATCTACTCCGGTAAGGA
GTTCAACCAGATCGAAGTCAAGCCCGAGATGGTTGGCCACTACCTGGGTG
AATTCTCTATCTCCTACAAGCCCGTCAAGCACGGTCGTCCCGGTATCGGT
GCCACCCACTCTTCCCGTTTCATTCCCCTCAAGTAAATGGCTGACGAGCA
CTACAACGCCGAGGAGGCTGCCGAGATCAAGAAGAGAAGACAGTTCCGCA
AGTTCACCTACCGCGGTATTGACCTCGACCAGCTCCTTGACCTCTCCTCC
GAACAGCTCCGTGATGTCGTTCACGCCCGCGCTCGTCGTCGCTTCAACCG
CGGTCTGAAGCGCAAGCCCATGGGTCTCATCAAGAAGCTCCGCAAGGCCA
AGCAGGAGGCTCGCCCCAACGAGAAGCCCGACCTCGTCAAGACCCACCTC
CGTGACATGATCGTTGTCCCCGAGATGATCGGCAGCGTCATCGGTATCTA
CTCCGGTAAGGAGTTCAACCAGATCGAAGTCAAGCCCGAGATGGTTGGCC
ACTACCTGGGTGAATTCTCTATCTCCTACAAGCCCGTCAAGCACGGTCGT
CCCGGTATCGGTGCCACCCACTCTTCCCGTTTCATTCCCCTCAAGTAAAT
GGCTGACGAGCACTACAACGCCGAGGAGGCTGCCGAGATCAAGAAGAGAA
GACAGTTCCGCAAGTTCACCTACCGCGGTATTGACCTCGACCAGCTCCTT
GACCTCTCCTCCGAACAGCTCCGTGATGTCGTTCACGCCCGCGCTCGTCG
TCGCTTCAACCGCGGTCTGAAGCGCAAGCCCATGGGTCTCATCAAGAAGC
TCCGCAAGGCCAAGCAGGAGGCTCGCCCCAACGAGAAGCCCGACCTCGTC
AAGACCCACCTCCGTGACATGATCGTTGTCCCCGAGATGATCGGCAGCGT
CATCGGTATCTACTCCGGTAAGGAGTTCAACCAGATCGAAGTCAAGCCCG
AGATGGTTGGCCACTACCTGGGTGAATTCTCTATCTCCTACAAGCCCGTC
AAGCACGGTCGTCCCGGTATCGGTGCCACCCACTCTTCCCGTTTCATTCC
CCTCAAGTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0015935small ribosomal subunit
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS15ATCC10864_000889Aspergillus niger ATCC 10864gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_000889-T1ATCC10864_000889-T1-proteinAspergillus niger ATCC 10864polypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_000889-T1.exon1ATCC10864_000889-T1.exon1Aspergillus niger ATCC 10864exon
ATCC10864_000889-T1.exon2ATCC10864_000889-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_000889-T1.exon3ATCC10864_000889-T1.exon3Aspergillus niger ATCC 10864exon
ATCC10864_000889-T1.exon4ATCC10864_000889-T1.exon4Aspergillus niger ATCC 10864exon
ATCC10864_000889-T1.exon5ATCC10864_000889-T1.exon5Aspergillus niger ATCC 10864exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_000889-T1.cdsATCC10864_000889-T1.cdsAspergillus niger ATCC 10864CDS


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR020934
InterProIPR005713
PFAMPF00203
InterProIPR002222
InterProIPR023575
Properties
Property NameValue
NoteBUSCO:EOG092658SK
Productribosomal protein S15
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000019supercontigMCQH01000019:273661..274760 +
Powered by Drupal