You are here

Home

ATCC10864_002557-T1, ATCC10864_002557-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_002557-T1
Unique NameATCC10864_002557-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000053:171882..173102-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_002557-T1 ID=ATCC10864_002557-T1|Name=ATCC10864_002557-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1221bp|location=Sequence derived from alignment at MCQH01000053:171882..173102- (Aspergillus niger ATCC 10864)
ATGCACTCTTACCAGCTTCTTGGCCTGGCCGCTGTCGGCTCCCTCGTCTC
TGCCGCCCCCGCTCCTTCTCGCGTCTCCGAGTTCGCTAAGAAGGCCTCTA
CCTGCACCTTCACCTCTGCCTCTGAGGCCAGCGAGAGCATCTCCAGCTGC
TCCGATGTTGTCCTGAGCAGCATCGAGGTCCCCGCTGGCGAGACCCTGGA
CCTGTCCGATGCTGCTGATGGCTCCACCGTATGTGCTCTCAACCGTCTTC
CACCCTGGCTATCACGCTAACACCATCTAGATCACCTTCGAGGGCACCAC
TTCCTTCGGATACAAGGAATGGAAGGGTCCCCTGATCCGCTTCGGTGGTA
AGGATCTGACCGTCACCATGGCCGACGGCGCTGTCATCGACGGTGACGGT
TCCCGCTGGTGGGACAGCAAGGGTACCAACGGTGGCAAGACCAAGCCCAA
GTTCATGTACATCCACGACGTTGAGGACTCGACCTTCAAGGGCATCAACA
TCAAGAATACTCCCGTCCAGGCCATCAGTGTCCAGGCTACCAACGTCCAC
CTGAACGACTTCACCATCGACAACTCCGACGGTGATGACAACGGTGGCCA
CAACACCGACGGTTTCGACATCAGCGAGTCCACCGGTGTCTACATCAGCG
GTGCTACCGTCAAGAACCAGGACGACTGCATTGCCATCAACTCTGGCGAG
GTACGATATCCCTATCCCACTATCATTCCTTCCATTCATATCGCTAACAA
TCAAACCCACAGAGCATCTCTTTCACCGGCGGTACCTGCTCCGGTGGCCA
CGGTCTCTCCATCGGCTCTGTCGGTGGCCGTGATGACAACACCGTCAAGA
ACGTGACCATCTCCGACTCCACTGTCAGCAACTCCGCCAATGGTGTCCGC
ATCAAGACCATCTACAAGGAGACCGGCGATGTCAGCGAGATCACCTACTC
CAACATCCAGCTCTCCGGCATCACCGACTACGGTATCGTCATCGAGCAGG
ACTACGAGAACGGCTCTCCCACCGGCACCCCCTCCACCGGTATCCCCATC
ACTGATGTCACTGTTGACGGTGTCACCGGCACTCTTGAGGATGACGCCAC
CCAGGTCTACATTCTCTGCGGTGACGGCTCTTGCTCTGACTGGACCTGGT
CCGGTGTTGACCTCTCTGGTGGCAAGACCAGCGATAAATGCGAGAACGTT
CCTTCCGGTGCTTCTTGCTAA
back to top

Coding sequence (CDS) from alignment at MCQH01000053:171882..173102-

>ATCC10864_002557-T1 ID=ATCC10864_002557-T1|Name=ATCC10864_002557-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=3321bp|location=Sequence derived from alignment at MCQH01000053:171882..173102- (Aspergillus niger ATCC 10864)
AGCATCTCTTTCACCGGCGGTACCTGCTCCGGTGGCCACGGTCTCTCCAT
CGGCTCTGTCGGTGGCCGTGATGACAACACCGTCAAGAACGTGACCATCT
CCGACTCCACTGTCAGCAACTCCGCCAATGGTGTCCGCATCAAGACCATC
TACAAGGAGACCGGCGATGTCAGCGAGATCACCTACTCCAACATCCAGCT
CTCCGGCATCACCGACTACGGTATCGTCATCGAGCAGGACTACGAGAACG
GCTCTCCCACCGGCACCCCCTCCACCGGTATCCCCATCACTGATGTCACT
GTTGACGGTGTCACCGGCACTCTTGAGGATGACGCCACCCAGGTCTACAT
TCTCTGCGGTGACGGCTCTTGCTCTGACTGGACCTGGTCCGGTGTTGACC
TCTCTGGTGGCAAGACCAGCGATAAATGCGAGAACGTTCCTTCCGGTGCT
TCTTGCTAAATCACCTTCGAGGGCACCACTTCCTTCGGATACAAGGAATG
GAAGGGTCCCCTGATCCGCTTCGGTGGTAAGGATCTGACCGTCACCATGG
CCGACGGCGCTGTCATCGACGGTGACGGTTCCCGCTGGTGGGACAGCAAG
GGTACCAACGGTGGCAAGACCAAGCCCAAGTTCATGTACATCCACGACGT
TGAGGACTCGACCTTCAAGGGCATCAACATCAAGAATACTCCCGTCCAGG
CCATCAGTGTCCAGGCTACCAACGTCCACCTGAACGACTTCACCATCGAC
AACTCCGACGGTGATGACAACGGTGGCCACAACACCGACGGTTTCGACAT
CAGCGAGTCCACCGGTGTCTACATCAGCGGTGCTACCGTCAAGAACCAGG
ACGACTGCATTGCCATCAACTCTGGCGAGATGCACTCTTACCAGCTTCTT
GGCCTGGCCGCTGTCGGCTCCCTCGTCTCTGCCGCCCCCGCTCCTTCTCG
CGTCTCCGAGTTCGCTAAGAAGGCCTCTACCTGCACCTTCACCTCTGCCT
CTGAGGCCAGCGAGAGCATCTCCAGCTGCTCCGATGTTGTCCTGAGCAGC
ATCGAGGTCCCCGCTGGCGAGACCCTGGACCTGTCCGATGCTGCTGATGG
CTCCACCAGCATCTCTTTCACCGGCGGTACCTGCTCCGGTGGCCACGGTC
TCTCCATCGGCTCTGTCGGTGGCCGTGATGACAACACCGTCAAGAACGTG
ACCATCTCCGACTCCACTGTCAGCAACTCCGCCAATGGTGTCCGCATCAA
GACCATCTACAAGGAGACCGGCGATGTCAGCGAGATCACCTACTCCAACA
TCCAGCTCTCCGGCATCACCGACTACGGTATCGTCATCGAGCAGGACTAC
GAGAACGGCTCTCCCACCGGCACCCCCTCCACCGGTATCCCCATCACTGA
TGTCACTGTTGACGGTGTCACCGGCACTCTTGAGGATGACGCCACCCAGG
TCTACATTCTCTGCGGTGACGGCTCTTGCTCTGACTGGACCTGGTCCGGT
GTTGACCTCTCTGGTGGCAAGACCAGCGATAAATGCGAGAACGTTCCTTC
CGGTGCTTCTTGCTAAATCACCTTCGAGGGCACCACTTCCTTCGGATACA
AGGAATGGAAGGGTCCCCTGATCCGCTTCGGTGGTAAGGATCTGACCGTC
ACCATGGCCGACGGCGCTGTCATCGACGGTGACGGTTCCCGCTGGTGGGA
CAGCAAGGGTACCAACGGTGGCAAGACCAAGCCCAAGTTCATGTACATCC
ACGACGTTGAGGACTCGACCTTCAAGGGCATCAACATCAAGAATACTCCC
GTCCAGGCCATCAGTGTCCAGGCTACCAACGTCCACCTGAACGACTTCAC
CATCGACAACTCCGACGGTGATGACAACGGTGGCCACAACACCGACGGTT
TCGACATCAGCGAGTCCACCGGTGTCTACATCAGCGGTGCTACCGTCAAG
AACCAGGACGACTGCATTGCCATCAACTCTGGCGAGATGCACTCTTACCA
GCTTCTTGGCCTGGCCGCTGTCGGCTCCCTCGTCTCTGCCGCCCCCGCTC
CTTCTCGCGTCTCCGAGTTCGCTAAGAAGGCCTCTACCTGCACCTTCACC
TCTGCCTCTGAGGCCAGCGAGAGCATCTCCAGCTGCTCCGATGTTGTCCT
GAGCAGCATCGAGGTCCCCGCTGGCGAGACCCTGGACCTGTCCGATGCTG
CTGATGGCTCCACCAGCATCTCTTTCACCGGCGGTACCTGCTCCGGTGGC
CACGGTCTCTCCATCGGCTCTGTCGGTGGCCGTGATGACAACACCGTCAA
GAACGTGACCATCTCCGACTCCACTGTCAGCAACTCCGCCAATGGTGTCC
GCATCAAGACCATCTACAAGGAGACCGGCGATGTCAGCGAGATCACCTAC
TCCAACATCCAGCTCTCCGGCATCACCGACTACGGTATCGTCATCGAGCA
GGACTACGAGAACGGCTCTCCCACCGGCACCCCCTCCACCGGTATCCCCA
TCACTGATGTCACTGTTGACGGTGTCACCGGCACTCTTGAGGATGACGCC
ACCCAGGTCTACATTCTCTGCGGTGACGGCTCTTGCTCTGACTGGACCTG
GTCCGGTGTTGACCTCTCTGGTGGCAAGACCAGCGATAAATGCGAGAACG
TTCCTTCCGGTGCTTCTTGCTAAATCACCTTCGAGGGCACCACTTCCTTC
GGATACAAGGAATGGAAGGGTCCCCTGATCCGCTTCGGTGGTAAGGATCT
GACCGTCACCATGGCCGACGGCGCTGTCATCGACGGTGACGGTTCCCGCT
GGTGGGACAGCAAGGGTACCAACGGTGGCAAGACCAAGCCCAAGTTCATG
TACATCCACGACGTTGAGGACTCGACCTTCAAGGGCATCAACATCAAGAA
TACTCCCGTCCAGGCCATCAGTGTCCAGGCTACCAACGTCCACCTGAACG
ACTTCACCATCGACAACTCCGACGGTGATGACAACGGTGGCCACAACACC
GACGGTTTCGACATCAGCGAGTCCACCGGTGTCTACATCAGCGGTGCTAC
CGTCAAGAACCAGGACGACTGCATTGCCATCAACTCTGGCGAGATGCACT
CTTACCAGCTTCTTGGCCTGGCCGCTGTCGGCTCCCTCGTCTCTGCCGCC
CCCGCTCCTTCTCGCGTCTCCGAGTTCGCTAAGAAGGCCTCTACCTGCAC
CTTCACCTCTGCCTCTGAGGCCAGCGAGAGCATCTCCAGCTGCTCCGATG
TTGTCCTGAGCAGCATCGAGGTCCCCGCTGGCGAGACCCTGGACCTGTCC
GATGCTGCTGATGGCTCCACC
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC10864_002557ATCC10864_002557Aspergillus niger ATCC 10864gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_002557-T1ATCC10864_002557-T1-proteinAspergillus niger ATCC 10864polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_002557-T1.cdsATCC10864_002557-T1.cdsAspergillus niger ATCC 10864CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_002557-T1.exon3ATCC10864_002557-T1.exon3Aspergillus niger ATCC 10864exon
ATCC10864_002557-T1.exon2ATCC10864_002557-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_002557-T1.exon1ATCC10864_002557-T1.exon1Aspergillus niger ATCC 10864exon


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR000743
InterProIPR006626
InterProIPR012334
InterProIPR011050
PFAMPF00295
Properties
Property NameValue
NoteCAZy:GH28
NoteSECRETED:SignalP(1-18)
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000053supercontigMCQH01000053:171882..173102 -
Powered by Drupal