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ATCC10864_002723-T1, ATCC10864_002723-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_002723-T1
Unique NameATCC10864_002723-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000053:611632..612531+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_002723-T1 ID=ATCC10864_002723-T1|Name=ATCC10864_002723-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=900bp|location=Sequence derived from alignment at MCQH01000053:611632..612531+ (Aspergillus niger ATCC 10864)
ATGTCTTTCCGTGGAGGCCGTGGCGGTTTCGGTGGCCGTGGAGGTGAGCT
CTAGCAACATAAGAGGTTGATCGCAACGCTGGGTATGAGCTAACGAAAAT
TTTGTCGGATAGGTCGCGGAGGTTTCCAGCAACCTCTCGGTCCCCCTGCC
CAAGTTCTGGGTAATTATACGCCAAAATGCGACTGGAGTGATTGGGACTA
ACGCGGAATAACTAGAGATGGGAACTGTCATGCATTCTTGCGAAGGCGAG
ATGGTTTGCGAATCGATCAACCCCAAGATTCCTTACTTCAACGCCCCCAT
CTACCTCGAGAACAAGGTATGCTCGACCTAGCTACTCTCCGCAAACTCGC
GATGCGCTAACGCAATTCTTTAATAGACCCCTATCGGCAAGGTCGATGAA
GTCCTGGGCCCTATCAACCAGGTCTACTTCACCATCAAGCCCCAGGAAGG
AATTGTCGCGACCTCCTTCAAGCCTGGTGACAAGGTCTACATTGGTGGCG
ACAAGCTCCTTCCCTTGGAGAAGTATGTTGCGAGTTGTTCTTGATCATGA
TGGAAACTTGTCTAACTTTGCAAAACTAGGTTCCTTCCCAAGCCCAAGCC
CGCTCCCGGTATGATTTCACTCGCTTCGCGCAACAATCCAATGTGCTTGA
TCCTAACCAGAATACAGGTGCTGCCAAGCCCAAGAGAGCTGGTGGTGGTG
CCCGAGGCGGTCCCATGCGCGGTGGCCGTGGTGGTGGCCGTGGTGGCCCC
ATGCGTGGTGGTCGCGGCGGCGCTCCCAGAGGACGCGGTGGCCCCCGCGG
TGGTGGCTTCCGTGGTGGTGGCGGTGGTGGTTTCGGCGGTGGTTTCTCGA
GGGGTGGTGGCAGAGGAGGACCTCGTGGTGGAGGCTTCCGAGGACGGTAG
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Coding sequence (CDS) from alignment at MCQH01000053:611632..612531+

>ATCC10864_002723-T1 ID=ATCC10864_002723-T1|Name=ATCC10864_002723-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=3600bp|location=Sequence derived from alignment at MCQH01000053:611632..612531+ (Aspergillus niger ATCC 10864)
ATGTCTTTCCGTGGAGGCCGTGGCGGTTTCGGTGGCCGTGGAGGTCGCGG
AGGTTTCCAGCAACCTCTCGGTCCCCCTGCCCAAGTTCTGGAGATGGGAA
CTGTCATGCATTCTTGCGAAGGCGAGATGGTTTGCGAATCGATCAACCCC
AAGATTCCTTACTTCAACGCCCCCATCTACCTCGAGAACAAGACCCCTAT
CGGCAAGGTCGATGAAGTCCTGGGCCCTATCAACCAGGTCTACTTCACCA
TCAAGCCCCAGGAAGGAATTGTCGCGACCTCCTTCAAGCCTGGTGACAAG
GTCTACATTGGTGGCGACAAGCTCCTTCCCTTGGAGAAGTTCCTTCCCAA
GCCCAAGCCCGCTCCCGGTGCTGCCAAGCCCAAGAGAGCTGGTGGTGGTG
CCCGAGGCGGTCCCATGCGCGGTGGCCGTGGTGGTGGCCGTGGTGGCCCC
ATGCGTGGTGGTCGCGGCGGCGCTCCCAGAGGACGCGGTGGCCCCCGCGG
TGGTGGCTTCCGTGGTGGTGGCGGTGGTGGTTTCGGCGGTGGTTTCTCGA
GGGGTGGTGGCAGAGGAGGACCTCGTGGTGGAGGCTTCCGAGGACGGTAG
ATGTCTTTCCGTGGAGGCCGTGGCGGTTTCGGTGGCCGTGGAGGTCGCGG
AGGTTTCCAGCAACCTCTCGGTCCCCCTGCCCAAGTTCTGGAGATGGGAA
CTGTCATGCATTCTTGCGAAGGCGAGATGGTTTGCGAATCGATCAACCCC
AAGATTCCTTACTTCAACGCCCCCATCTACCTCGAGAACAAGACCCCTAT
CGGCAAGGTCGATGAAGTCCTGGGCCCTATCAACCAGGTCTACTTCACCA
TCAAGCCCCAGGAAGGAATTGTCGCGACCTCCTTCAAGCCTGGTGACAAG
GTCTACATTGGTGGCGACAAGCTCCTTCCCTTGGAGAAGTTCCTTCCCAA
GCCCAAGCCCGCTCCCGGTGCTGCCAAGCCCAAGAGAGCTGGTGGTGGTG
CCCGAGGCGGTCCCATGCGCGGTGGCCGTGGTGGTGGCCGTGGTGGCCCC
ATGCGTGGTGGTCGCGGCGGCGCTCCCAGAGGACGCGGTGGCCCCCGCGG
TGGTGGCTTCCGTGGTGGTGGCGGTGGTGGTTTCGGCGGTGGTTTCTCGA
GGGGTGGTGGCAGAGGAGGACCTCGTGGTGGAGGCTTCCGAGGACGGTAG
ATGTCTTTCCGTGGAGGCCGTGGCGGTTTCGGTGGCCGTGGAGGTCGCGG
AGGTTTCCAGCAACCTCTCGGTCCCCCTGCCCAAGTTCTGGAGATGGGAA
CTGTCATGCATTCTTGCGAAGGCGAGATGGTTTGCGAATCGATCAACCCC
AAGATTCCTTACTTCAACGCCCCCATCTACCTCGAGAACAAGACCCCTAT
CGGCAAGGTCGATGAAGTCCTGGGCCCTATCAACCAGGTCTACTTCACCA
TCAAGCCCCAGGAAGGAATTGTCGCGACCTCCTTCAAGCCTGGTGACAAG
GTCTACATTGGTGGCGACAAGCTCCTTCCCTTGGAGAAGTTCCTTCCCAA
GCCCAAGCCCGCTCCCGGTGCTGCCAAGCCCAAGAGAGCTGGTGGTGGTG
CCCGAGGCGGTCCCATGCGCGGTGGCCGTGGTGGTGGCCGTGGTGGCCCC
ATGCGTGGTGGTCGCGGCGGCGCTCCCAGAGGACGCGGTGGCCCCCGCGG
TGGTGGCTTCCGTGGTGGTGGCGGTGGTGGTTTCGGCGGTGGTTTCTCGA
GGGGTGGTGGCAGAGGAGGACCTCGTGGTGGAGGCTTCCGAGGACGGTAG
ATGTCTTTCCGTGGAGGCCGTGGCGGTTTCGGTGGCCGTGGAGGTCGCGG
AGGTTTCCAGCAACCTCTCGGTCCCCCTGCCCAAGTTCTGGAGATGGGAA
CTGTCATGCATTCTTGCGAAGGCGAGATGGTTTGCGAATCGATCAACCCC
AAGATTCCTTACTTCAACGCCCCCATCTACCTCGAGAACAAGACCCCTAT
CGGCAAGGTCGATGAAGTCCTGGGCCCTATCAACCAGGTCTACTTCACCA
TCAAGCCCCAGGAAGGAATTGTCGCGACCTCCTTCAAGCCTGGTGACAAG
GTCTACATTGGTGGCGACAAGCTCCTTCCCTTGGAGAAGTTCCTTCCCAA
GCCCAAGCCCGCTCCCGGTGCTGCCAAGCCCAAGAGAGCTGGTGGTGGTG
CCCGAGGCGGTCCCATGCGCGGTGGCCGTGGTGGTGGCCGTGGTGGCCCC
ATGCGTGGTGGTCGCGGCGGCGCTCCCAGAGGACGCGGTGGCCCCCGCGG
TGGTGGCTTCCGTGGTGGTGGCGGTGGTGGTTTCGGCGGTGGTTTCTCGA
GGGGTGGTGGCAGAGGAGGACCTCGTGGTGGAGGCTTCCGAGGACGGTAG
ATGTCTTTCCGTGGAGGCCGTGGCGGTTTCGGTGGCCGTGGAGGTCGCGG
AGGTTTCCAGCAACCTCTCGGTCCCCCTGCCCAAGTTCTGGAGATGGGAA
CTGTCATGCATTCTTGCGAAGGCGAGATGGTTTGCGAATCGATCAACCCC
AAGATTCCTTACTTCAACGCCCCCATCTACCTCGAGAACAAGACCCCTAT
CGGCAAGGTCGATGAAGTCCTGGGCCCTATCAACCAGGTCTACTTCACCA
TCAAGCCCCAGGAAGGAATTGTCGCGACCTCCTTCAAGCCTGGTGACAAG
GTCTACATTGGTGGCGACAAGCTCCTTCCCTTGGAGAAGTTCCTTCCCAA
GCCCAAGCCCGCTCCCGGTGCTGCCAAGCCCAAGAGAGCTGGTGGTGGTG
CCCGAGGCGGTCCCATGCGCGGTGGCCGTGGTGGTGGCCGTGGTGGCCCC
ATGCGTGGTGGTCGCGGCGGCGCTCCCAGAGGACGCGGTGGCCCCCGCGG
TGGTGGCTTCCGTGGTGGTGGCGGTGGTGGTTTCGGCGGTGGTTTCTCGA
GGGGTGGTGGCAGAGGAGGACCTCGTGGTGGAGGCTTCCGAGGACGGTAG
ATGTCTTTCCGTGGAGGCCGTGGCGGTTTCGGTGGCCGTGGAGGTCGCGG
AGGTTTCCAGCAACCTCTCGGTCCCCCTGCCCAAGTTCTGGAGATGGGAA
CTGTCATGCATTCTTGCGAAGGCGAGATGGTTTGCGAATCGATCAACCCC
AAGATTCCTTACTTCAACGCCCCCATCTACCTCGAGAACAAGACCCCTAT
CGGCAAGGTCGATGAAGTCCTGGGCCCTATCAACCAGGTCTACTTCACCA
TCAAGCCCCAGGAAGGAATTGTCGCGACCTCCTTCAAGCCTGGTGACAAG
GTCTACATTGGTGGCGACAAGCTCCTTCCCTTGGAGAAGTTCCTTCCCAA
GCCCAAGCCCGCTCCCGGTGCTGCCAAGCCCAAGAGAGCTGGTGGTGGTG
CCCGAGGCGGTCCCATGCGCGGTGGCCGTGGTGGTGGCCGTGGTGGCCCC
ATGCGTGGTGGTCGCGGCGGCGCTCCCAGAGGACGCGGTGGCCCCCGCGG
TGGTGGCTTCCGTGGTGGTGGCGGTGGTGGTTTCGGCGGTGGTTTCTCGA
GGGGTGGTGGCAGAGGAGGACCTCGTGGTGGAGGCTTCCGAGGACGGTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0042254ribosome biogenesis
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
GAR1_2ATCC10864_002723Aspergillus niger ATCC 10864gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_002723-T1ATCC10864_002723-T1-proteinAspergillus niger ATCC 10864polypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_002723-T1.exon1ATCC10864_002723-T1.exon1Aspergillus niger ATCC 10864exon
ATCC10864_002723-T1.exon2ATCC10864_002723-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_002723-T1.exon3ATCC10864_002723-T1.exon3Aspergillus niger ATCC 10864exon
ATCC10864_002723-T1.exon4ATCC10864_002723-T1.exon4Aspergillus niger ATCC 10864exon
ATCC10864_002723-T1.exon5ATCC10864_002723-T1.exon5Aspergillus niger ATCC 10864exon
ATCC10864_002723-T1.exon6ATCC10864_002723-T1.exon6Aspergillus niger ATCC 10864exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_002723-T1.cdsATCC10864_002723-T1.cdsAspergillus niger ATCC 10864CDS


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR009000
InterProIPR007504
PFAMPF04410
InterProIPR038664
Properties
Property NameValue
ProductH/ACA snoRNP pseudouridylase subunit
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000053supercontigMCQH01000053:611632..612531 +
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