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Sequences
The following sequences are available for this feature:
mRNA from alignment at MCQH01000068:542222..543776- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >ATCC10864_003761-T1 ID=ATCC10864_003761-T1|Name=ATCC10864_003761-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1555bp|location=Sequence derived from alignment at MCQH01000068:542222..543776- (Aspergillus niger ATCC 10864)
ATGCCTGGAGTCAAGAAGCGCAAGGTCGCCCGTGAGGCACCTGCGCCTGC
GCCCGCACAAGAGAGCGATGTCGAATCTTCCACCCCAGAGCAAACGCAAG
AACCAGAAGCACAAGAGCAGGAACAAGAAGAGGGACAGTCCAAGACATTC
AAGGAACTAGGAATCATCGAACAGCTATGCGAGGCTTGCGAGACCATGGG
CTACAAAGCGCCTACACCTATTCAGCGGGAGTCGATTCCTCTGGCTCTTC
AAGGCCGTGATTTGATCGGTCTTGCAGAGACCGGAAGTGGAAAGACGGCA
GCGTTTGCTCTTCCCATCCTCCAAGGTACGTTTCCAGCTACAACAATCTT
GTATCGCCTTTTATCGGCGCTCCCAAATATGACTAGATCAAATAACTAAC
ATCACCCCACAGCCTTGATGGAAAAGCCCCAACCCTTCTTCGGCCTCGTC
CTCGCCCCAACCCGAGAACTCGCCTACCAGATCTCCAAATCTTTCGAGTC
CCTAGGCGCCAGCATGGGTGTGCGAAGCTGCGTCATCGTCGGGGGCATGG
ACATGGTCTCTCAGTCAATTTCCCTCGGCAAAAAGCCCCATATCATCGTG
GCCACCCCTGGTCGTCTTCTGGACCACCTCGAGAACACCAAGGGCTTCTC
CCTCCGCAACCTGAAGTACCTGGTGATGGACGAAGCGGATCGACTTCTTG
ACATGGACTTCGGACCCCTCCTCGACAAGATCCTGAAAGTCCTGCCCCGT
GAGCGCCGCACATTCCTCTTCTCTGCGACGATGAGCTCAAAGGTCGAATC
CCTCCAACGTGCCTCCCTCTCCAACCCGCTCCGTGTCTCTGTCTCCACAA
GCAAATACCAGACCGTCTCGACTCTCCTCCAATCTTACCTCTTCATTCCC
CAGAAGCACAAGGACCTGTACCTTGTCTACCTGTTGAACGAATTCGCCGG
CCAGAGTACTATCATCTTCACGAGGACGGTGAACGAGACGCAGAGACTTG
CGTTCTTGCTTCGTGCGCTTGGCTTCGGCGCTATCCCGCTGCATGGACAG
CTTTCACAGTCTGCTCGTCTCGGTGCGCTGGGCAAGTTCCGTGCTCGTAG
TCGGAATATTCTTGTCGCTACGGATGTGGCTGCTCGTGGTTTGGATATTC
CGTCCGTTGATGTTGTGCTTAACTTTGATTTGCCGGGTGGTATGTATACC
CGATCTTCTGTTATGGGAGTATTATTGGAGTCGGCTAATTTTTAATGTAT
TAGATTCTCCCAGCTATGTCCACCGTGTCGGACGTACTGCCCGTGCTGGA
AAGAGTGGTCTTGCTATCAGCTTTGTCGCCCAGTACGATGTTGAGGTTTG
GCTGAGGATCGAAGGTGCTTTGGGCAAGAAGCTCAAGGAATACGACTGCC
CTAAGGATGAGGTCATGGTGCTTGGTGAGAATGTCGCGGAGGCGCAACGG
CAGGCGATTATGGATATGAAGGATTACAATGAGAAGAAGGGAAGCAGGGG
CAAGAAGTTCGGTGGGAAGCGTTCTCGGGATGAGATGGATCAAGAGGAGG
GTTAG back to topCoding sequence (CDS) from alignment at MCQH01000068:542222..543776- >ATCC10864_003761-T1 ID=ATCC10864_003761-T1|Name=ATCC10864_003761-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=4212bp|location=Sequence derived from alignment at MCQH01000068:542222..543776- (Aspergillus niger ATCC 10864)
ATTCTCCCAGCTATGTCCACCGTGTCGGACGTACTGCCCGTGCTGGAAAG
AGTGGTCTTGCTATCAGCTTTGTCGCCCAGTACGATGTTGAGGTTTGGCT
GAGGATCGAAGGTGCTTTGGGCAAGAAGCTCAAGGAATACGACTGCCCTA
AGGATGAGGTCATGGTGCTTGGTGAGAATGTCGCGGAGGCGCAACGGCAG
GCGATTATGGATATGAAGGATTACAATGAGAAGAAGGGAAGCAGGGGCAA
GAAGTTCGGTGGGAAGCGTTCTCGGGATGAGATGGATCAAGAGGAGGGTT
AGCCTTGATGGAAAAGCCCCAACCCTTCTTCGGCCTCGTCCTCGCCCCAA
CCCGAGAACTCGCCTACCAGATCTCCAAATCTTTCGAGTCCCTAGGCGCC
AGCATGGGTGTGCGAAGCTGCGTCATCGTCGGGGGCATGGACATGGTCTC
TCAGTCAATTTCCCTCGGCAAAAAGCCCCATATCATCGTGGCCACCCCTG
GTCGTCTTCTGGACCACCTCGAGAACACCAAGGGCTTCTCCCTCCGCAAC
CTGAAGTACCTGGTGATGGACGAAGCGGATCGACTTCTTGACATGGACTT
CGGACCCCTCCTCGACAAGATCCTGAAAGTCCTGCCCCGTGAGCGCCGCA
CATTCCTCTTCTCTGCGACGATGAGCTCAAAGGTCGAATCCCTCCAACGT
GCCTCCCTCTCCAACCCGCTCCGTGTCTCTGTCTCCACAAGCAAATACCA
GACCGTCTCGACTCTCCTCCAATCTTACCTCTTCATTCCCCAGAAGCACA
AGGACCTGTACCTTGTCTACCTGTTGAACGAATTCGCCGGCCAGAGTACT
ATCATCTTCACGAGGACGGTGAACGAGACGCAGAGACTTGCGTTCTTGCT
TCGTGCGCTTGGCTTCGGCGCTATCCCGCTGCATGGACAGCTTTCACAGT
CTGCTCGTCTCGGTGCGCTGGGCAAGTTCCGTGCTCGTAGTCGGAATATT
CTTGTCGCTACGGATGTGGCTGCTCGTGGTTTGGATATTCCGTCCGTTGA
TGTTGTGCTTAACTTTGATTTGCCGGGTGATGCCTGGAGTCAAGAAGCGC
AAGGTCGCCCGTGAGGCACCTGCGCCTGCGCCCGCACAAGAGAGCGATGT
CGAATCTTCCACCCCAGAGCAAACGCAAGAACCAGAAGCACAAGAGCAGG
AACAAGAAGAGGGACAGTCCAAGACATTCAAGGAACTAGGAATCATCGAA
CAGCTATGCGAGGCTTGCGAGACCATGGGCTACAAAGCGCCTACACCTAT
TCAGCGGGAGTCGATTCCTCTGGCTCTTCAAGGCCGTGATTTGATCGGTC
TTGCAGAGACCGGAAGTGGAAAGACGGCAGCGTTTGCTCTTCCCATCCTC
CAAGATTCTCCCAGCTATGTCCACCGTGTCGGACGTACTGCCCGTGCTGG
AAAGAGTGGTCTTGCTATCAGCTTTGTCGCCCAGTACGATGTTGAGGTTT
GGCTGAGGATCGAAGGTGCTTTGGGCAAGAAGCTCAAGGAATACGACTGC
CCTAAGGATGAGGTCATGGTGCTTGGTGAGAATGTCGCGGAGGCGCAACG
GCAGGCGATTATGGATATGAAGGATTACAATGAGAAGAAGGGAAGCAGGG
GCAAGAAGTTCGGTGGGAAGCGTTCTCGGGATGAGATGGATCAAGAGGAG
GGTTAGCCTTGATGGAAAAGCCCCAACCCTTCTTCGGCCTCGTCCTCGCC
CCAACCCGAGAACTCGCCTACCAGATCTCCAAATCTTTCGAGTCCCTAGG
CGCCAGCATGGGTGTGCGAAGCTGCGTCATCGTCGGGGGCATGGACATGG
TCTCTCAGTCAATTTCCCTCGGCAAAAAGCCCCATATCATCGTGGCCACC
CCTGGTCGTCTTCTGGACCACCTCGAGAACACCAAGGGCTTCTCCCTCCG
CAACCTGAAGTACCTGGTGATGGACGAAGCGGATCGACTTCTTGACATGG
ACTTCGGACCCCTCCTCGACAAGATCCTGAAAGTCCTGCCCCGTGAGCGC
CGCACATTCCTCTTCTCTGCGACGATGAGCTCAAAGGTCGAATCCCTCCA
ACGTGCCTCCCTCTCCAACCCGCTCCGTGTCTCTGTCTCCACAAGCAAAT
ACCAGACCGTCTCGACTCTCCTCCAATCTTACCTCTTCATTCCCCAGAAG
CACAAGGACCTGTACCTTGTCTACCTGTTGAACGAATTCGCCGGCCAGAG
TACTATCATCTTCACGAGGACGGTGAACGAGACGCAGAGACTTGCGTTCT
TGCTTCGTGCGCTTGGCTTCGGCGCTATCCCGCTGCATGGACAGCTTTCA
CAGTCTGCTCGTCTCGGTGCGCTGGGCAAGTTCCGTGCTCGTAGTCGGAA
TATTCTTGTCGCTACGGATGTGGCTGCTCGTGGTTTGGATATTCCGTCCG
TTGATGTTGTGCTTAACTTTGATTTGCCGGGTGATGCCTGGAGTCAAGAA
GCGCAAGGTCGCCCGTGAGGCACCTGCGCCTGCGCCCGCACAAGAGAGCG
ATGTCGAATCTTCCACCCCAGAGCAAACGCAAGAACCAGAAGCACAAGAG
CAGGAACAAGAAGAGGGACAGTCCAAGACATTCAAGGAACTAGGAATCAT
CGAACAGCTATGCGAGGCTTGCGAGACCATGGGCTACAAAGCGCCTACAC
CTATTCAGCGGGAGTCGATTCCTCTGGCTCTTCAAGGCCGTGATTTGATC
GGTCTTGCAGAGACCGGAAGTGGAAAGACGGCAGCGTTTGCTCTTCCCAT
CCTCCAAGATTCTCCCAGCTATGTCCACCGTGTCGGACGTACTGCCCGTG
CTGGAAAGAGTGGTCTTGCTATCAGCTTTGTCGCCCAGTACGATGTTGAG
GTTTGGCTGAGGATCGAAGGTGCTTTGGGCAAGAAGCTCAAGGAATACGA
CTGCCCTAAGGATGAGGTCATGGTGCTTGGTGAGAATGTCGCGGAGGCGC
AACGGCAGGCGATTATGGATATGAAGGATTACAATGAGAAGAAGGGAAGC
AGGGGCAAGAAGTTCGGTGGGAAGCGTTCTCGGGATGAGATGGATCAAGA
GGAGGGTTAGCCTTGATGGAAAAGCCCCAACCCTTCTTCGGCCTCGTCCT
CGCCCCAACCCGAGAACTCGCCTACCAGATCTCCAAATCTTTCGAGTCCC
TAGGCGCCAGCATGGGTGTGCGAAGCTGCGTCATCGTCGGGGGCATGGAC
ATGGTCTCTCAGTCAATTTCCCTCGGCAAAAAGCCCCATATCATCGTGGC
CACCCCTGGTCGTCTTCTGGACCACCTCGAGAACACCAAGGGCTTCTCCC
TCCGCAACCTGAAGTACCTGGTGATGGACGAAGCGGATCGACTTCTTGAC
ATGGACTTCGGACCCCTCCTCGACAAGATCCTGAAAGTCCTGCCCCGTGA
GCGCCGCACATTCCTCTTCTCTGCGACGATGAGCTCAAAGGTCGAATCCC
TCCAACGTGCCTCCCTCTCCAACCCGCTCCGTGTCTCTGTCTCCACAAGC
AAATACCAGACCGTCTCGACTCTCCTCCAATCTTACCTCTTCATTCCCCA
GAAGCACAAGGACCTGTACCTTGTCTACCTGTTGAACGAATTCGCCGGCC
AGAGTACTATCATCTTCACGAGGACGGTGAACGAGACGCAGAGACTTGCG
TTCTTGCTTCGTGCGCTTGGCTTCGGCGCTATCCCGCTGCATGGACAGCT
TTCACAGTCTGCTCGTCTCGGTGCGCTGGGCAAGTTCCGTGCTCGTAGTC
GGAATATTCTTGTCGCTACGGATGTGGCTGCTCGTGGTTTGGATATTCCG
TCCGTTGATGTTGTGCTTAACTTTGATTTGCCGGGTGATGCCTGGAGTCA
AGAAGCGCAAGGTCGCCCGTGAGGCACCTGCGCCTGCGCCCGCACAAGAG
AGCGATGTCGAATCTTCCACCCCAGAGCAAACGCAAGAACCAGAAGCACA
AGAGCAGGAACAAGAAGAGGGACAGTCCAAGACATTCAAGGAACTAGGAA
TCATCGAACAGCTATGCGAGGCTTGCGAGACCATGGGCTACAAAGCGCCT
ACACCTATTCAGCGGGAGTCGATTCCTCTGGCTCTTCAAGGCCGTGATTT
GATCGGTCTTGCAGAGACCGGAAGTGGAAAGACGGCAGCGTTTGCTCTTC
CCATCCTCCAAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005524 | ATP binding |
| GO:0003676 | nucleic acid binding |
| GO:0003724 | RNA helicase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Cross References
External references for this mRNA
| Database | Accession |
|---|
| PFAM | PF00270 |
| InterPro | IPR027417 |
| InterPro | IPR000629 |
| PFAM | PF00271 |
| PFAM | PF04851 |
| InterPro | IPR014014 |
| InterPro | IPR001650 |
| InterPro | IPR044765 |
| InterPro | IPR011545 |
| InterPro | IPR014001 |
Properties
| Property Name | Value |
|---|
| Product | ribosomal RNA processing protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| MCQH01000068 | supercontig | MCQH01000068:542222..543776 - |
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