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Sequences
The following sequences are available for this feature:
mRNA from alignment at MCQH01000073:423427..424610+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >ATCC10864_004361-T1 ID=ATCC10864_004361-T1|Name=ATCC10864_004361-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1184bp|location=Sequence derived from alignment at MCQH01000073:423427..424610+ (Aspergillus niger ATCC 10864)
ATGCCGGAGCTAGCGGAAGTCTCGCGTATAGTCCATTTCCTTCGTCAACA
TCTTGTCGGCAAAACGCTTTCCAAGGTGTCAGTGCAAAACGATGACATTA
TCTACGGCAAAGCCGGTACTACTGCTGCCGAGTTTCAGAAGGCAATGGAG
GGGAAGAAAGTTACTGGTGCCGGACAGCAGGGCAAGTACTTCTGGATTGC
TATGTCATCACCACCCCATGCGGTTATGCATTTCGGTATGGCGGGCTGGC
TGAAAATCCGGGATGCCGACACCTATTACTACCGGACAGACAAACCAGGA
GATAAGGAGTGGCCGCCAAAATACTGGAAATTCTTGCTCGAAACCGAGGG
AGATCCAAAGACAGAAGCTGCTTTTGTTGACTTTCGCCGACTGGGCAGAA
TACGCCTGGTAGACTGTCCCGCGGAGGAAATCCGTAACTACAGCCCTCTG
AAAGAGAATGGCCCAGATCCTGTCGCCGATAAAGACATTGTGTCGGAGGA
GTGGCTGGCAAAGAAGCTCCGAAGCAAGAAGGTACCTGTGAAGGCGCTGC
TCCTTGATCAAGCGAATATCAGCGGAATAGGCAACTGGATGGGGTATGCT
CCTTCAGTCTCCCACCATGACTGATTACATCTAGCTGACTGATTTCTAGC
GATGAGATCCTCTACCAAGCTAAAATACACCCTGAGCAATACAGCAACAC
TTTGGATGACGACCAGATTAGAGAGCTGCACTCAGCGATACATTATATCT
GTTCCACCTCCGTAGAGCTTCTAGCAGATTCGGAGAAATTTCCAGCTGAC
TGGCTGTTCAAACATCGGTGGAGTAAAGGCAAGAAGAACACGCCATCAGT
GCTGCCAAACGGAGAAAAGATTACCTTTCTCACGGTAGGGGGCAGGACCA
GCGCAGTGGTTCCGAGTGTGCAGAAAAAAACTGGGCCAGTAGCCAAGGAC
GTCAGCAGTGAAGACGCCAGCAATGCGCCGGCAAACTCGAAGCGAAAGCG
GGCTTCAGTGAAAAAGGAGGAGAGCGAGCCGGAAGCTAGCGAAGAGGATA
CGAAGCCCAAGAAGACCGGGCCCAAAAGGCAAAGCAGAACTTCTGTCAAG
AAGGAAGACATCGATGAGACAGAGACTAAGCCGATAGAAGAACAGCAAAC
TACCAGGAGACGCTCGGACCGACTTCGAAAGTAG back to topCoding sequence (CDS) from alignment at MCQH01000073:423427..424610+ >ATCC10864_004361-T1 ID=ATCC10864_004361-T1|Name=ATCC10864_004361-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=2256bp|location=Sequence derived from alignment at MCQH01000073:423427..424610+ (Aspergillus niger ATCC 10864)
ATGCCGGAGCTAGCGGAAGTCTCGCGTATAGTCCATTTCCTTCGTCAACA
TCTTGTCGGCAAAACGCTTTCCAAGGTGTCAGTGCAAAACGATGACATTA
TCTACGGCAAAGCCGGTACTACTGCTGCCGAGTTTCAGAAGGCAATGGAG
GGGAAGAAAGTTACTGGTGCCGGACAGCAGGGCAAGTACTTCTGGATTGC
TATGTCATCACCACCCCATGCGGTTATGCATTTCGGTATGGCGGGCTGGC
TGAAAATCCGGGATGCCGACACCTATTACTACCGGACAGACAAACCAGGA
GATAAGGAGTGGCCGCCAAAATACTGGAAATTCTTGCTCGAAACCGAGGG
AGATCCAAAGACAGAAGCTGCTTTTGTTGACTTTCGCCGACTGGGCAGAA
TACGCCTGGTAGACTGTCCCGCGGAGGAAATCCGTAACTACAGCCCTCTG
AAAGAGAATGGCCCAGATCCTGTCGCCGATAAAGACATTGTGTCGGAGGA
GTGGCTGGCAAAGAAGCTCCGAAGCAAGAAGGTACCTGTGAAGGCGCTGC
TCCTTGATCAAGCGAATATCAGCGGAATAGGCAACTGGATGGGCGATGAG
ATCCTCTACCAAGCTAAAATACACCCTGAGCAATACAGCAACACTTTGGA
TGACGACCAGATTAGAGAGCTGCACTCAGCGATACATTATATCTGTTCCA
CCTCCGTAGAGCTTCTAGCAGATTCGGAGAAATTTCCAGCTGACTGGCTG
TTCAAACATCGGTGGAGTAAAGGCAAGAAGAACACGCCATCAGTGCTGCC
AAACGGAGAAAAGATTACCTTTCTCACGGTAGGGGGCAGGACCAGCGCAG
TGGTTCCGAGTGTGCAGAAAAAAACTGGGCCAGTAGCCAAGGACGTCAGC
AGTGAAGACGCCAGCAATGCGCCGGCAAACTCGAAGCGAAAGCGGGCTTC
AGTGAAAAAGGAGGAGAGCGAGCCGGAAGCTAGCGAAGAGGATACGAAGC
CCAAGAAGACCGGGCCCAAAAGGCAAAGCAGAACTTCTGTCAAGAAGGAA
GACATCGATGAGACAGAGACTAAGCCGATAGAAGAACAGCAAACTACCAG
GAGACGCTCGGACCGACTTCGAAAGTAGATGCCGGAGCTAGCGGAAGTCT
CGCGTATAGTCCATTTCCTTCGTCAACATCTTGTCGGCAAAACGCTTTCC
AAGGTGTCAGTGCAAAACGATGACATTATCTACGGCAAAGCCGGTACTAC
TGCTGCCGAGTTTCAGAAGGCAATGGAGGGGAAGAAAGTTACTGGTGCCG
GACAGCAGGGCAAGTACTTCTGGATTGCTATGTCATCACCACCCCATGCG
GTTATGCATTTCGGTATGGCGGGCTGGCTGAAAATCCGGGATGCCGACAC
CTATTACTACCGGACAGACAAACCAGGAGATAAGGAGTGGCCGCCAAAAT
ACTGGAAATTCTTGCTCGAAACCGAGGGAGATCCAAAGACAGAAGCTGCT
TTTGTTGACTTTCGCCGACTGGGCAGAATACGCCTGGTAGACTGTCCCGC
GGAGGAAATCCGTAACTACAGCCCTCTGAAAGAGAATGGCCCAGATCCTG
TCGCCGATAAAGACATTGTGTCGGAGGAGTGGCTGGCAAAGAAGCTCCGA
AGCAAGAAGGTACCTGTGAAGGCGCTGCTCCTTGATCAAGCGAATATCAG
CGGAATAGGCAACTGGATGGGCGATGAGATCCTCTACCAAGCTAAAATAC
ACCCTGAGCAATACAGCAACACTTTGGATGACGACCAGATTAGAGAGCTG
CACTCAGCGATACATTATATCTGTTCCACCTCCGTAGAGCTTCTAGCAGA
TTCGGAGAAATTTCCAGCTGACTGGCTGTTCAAACATCGGTGGAGTAAAG
GCAAGAAGAACACGCCATCAGTGCTGCCAAACGGAGAAAAGATTACCTTT
CTCACGGTAGGGGGCAGGACCAGCGCAGTGGTTCCGAGTGTGCAGAAAAA
AACTGGGCCAGTAGCCAAGGACGTCAGCAGTGAAGACGCCAGCAATGCGC
CGGCAAACTCGAAGCGAAAGCGGGCTTCAGTGAAAAAGGAGGAGAGCGAG
CCGGAAGCTAGCGAAGAGGATACGAAGCCCAAGAAGACCGGGCCCAAAAG
GCAAAGCAGAACTTCTGTCAAGAAGGAAGACATCGATGAGACAGAGACTA
AGCCGATAGAAGAACAGCAAACTACCAGGAGACGCTCGGACCGACTTCGA
AAGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003906 | DNA-(apurinic or apyrimidinic site) endonuclease activity |
| GO:0008270 | zinc ion binding |
| GO:0019104 | DNA N-glycosylase activity |
| GO:0003676 | nucleic acid binding |
| GO:0003684 | damaged DNA binding |
| GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006284 | base-excision repair |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Cross References
External references for this mRNA
| Database | Accession |
|---|
| InterPro | IPR012319 |
| PFAM | PF06831 |
| InterPro | IPR010979 |
| InterPro | IPR035937 |
| InterPro | IPR015886 |
| PFAM | PF01149 |
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| MCQH01000073 | supercontig | MCQH01000073:423427..424610 + |
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