You are here

Home

ATCC10864_004546-T1, ATCC10864_004546-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_004546-T1
Unique NameATCC10864_004546-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000074:285231..286850-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_004546-T1 ID=ATCC10864_004546-T1|Name=ATCC10864_004546-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1620bp|location=Sequence derived from alignment at MCQH01000074:285231..286850- (Aspergillus niger ATCC 10864)
ATGCCTGTCCAATGGATACGAGATAGCTTCCTCGGCCAGACTTTGCGTCT
ATTTTGTCGACCATCCTGTTTGGCGTATGCCGAAGAGCAAGAAGGCTGGA
TAGATACTGTCGAGATTAAACCCCTACCGCTTGACAACGAAAAAATCATT
TGCGTGGAATGGTATTCTGCCGATGACGAAGAGAACCCCCATAACTGGTC
TCAACTTAAGAAAGCATATATCCTTGGTGTCATTGGTGCGTACAGCTTTG
TGGTCTACATGTCCGCACCAATCTACACACCGAGCGAAAATGCCTTCATC
GAGGAATATCATGTGAACAAAGCCGAATCATCCCTAGGACTCGCTCTTTA
CGTGTAAGCACATTTCATTTAACCATTTACTTCCCCGCTGCCCCGGATAA
GTTACTGACTGTTATTTAGTCTAGGTTACGGTGCAGGCCCCATGTTCTTC
AGTCCCCTCAGTGAGATCCCGCGTATAGGCCGTAGCCTCCCATACGTTAT
ATCCTTCATCTTTTACTGCATATTAAGCATACCCACGGCTTTGAGCCCTT
CCGCTACTGGCTTCTACGTTCTTCGCTTCCTCCAAGGATTCTTCGGAAGC
CCTTGTCTCGCTACTGGTGGCGCCTCAATTGCGGACATTTATTCCTCCGA
TGTATTGCCTCATGCAATGACGACCTGGGTACTGTCTGTCTTTTGTGCAC
CTGCTATTGGTGTGTTAGTGGCTGGGTTTGCCATCCCAGTTCTTGGATGG
CGGTTCTCAATGTGGGAGATCCTGATCGCCTCTGCTCCAATCCTCATTCT
CCTTCTACTTCTCCCCGAAACTAGCTCAGCTACAATCTTACATCGCCGTG
CCCGTTGCTTGGAAAAGAACAACAAATTGGGAACACACAAGTACCAGACA
GTGGCTGATATCCGTCAAGGAGATACGTCCTTCCATGCTGTCCTCCGAGA
GTCGCTACTCATCCCCTCAAAAATCACCCTTCTGGACCCGGCCATCCTAT
TCCTGAACTGCTACACCTCTCTCACGTACGGCATTTACTACTCCTTCTTC
GAAGCCTTCCCAATAGTATACCAAGGAATATACGGTTTCAACCTAGGAGA
AATGGGAGTCGCTTTCCTCGCCATTGTGGTCGGATCGATCATTTCCTTCC
TCGTCTACAATTTCTACATCCACCGCCTCTATGCGCCAACTGTACGAAGC
AGTGGTCTTAAAAAGCCTGAGGATGTCTTGGTGCCCGCTCTTTTTGCATG
CTTTGGGCCATCTATTGGGCTTTTCCTCTTTGGCTGGGCGGCCAGGTCCG
ATGTCCATTGGATTGTCCCTACCATCGGCATTGTCATCTACCCCGGATGT
GTCTTCATTATAATGCAGTGTGTGTTTCTGTACATACCTGCTTGTCATCC
ACACTACGCGGCGAGTGTCTTTGCTGCCACTGACTTTACTCGAAGTGCTT
TTGCCTGTGGTTCCGTGATGTTCTCGCGGCCACTCTACGAGAACTTGGGC
TTGGGTCCAGGGTGCAGTCTCTTGGCTGGGTTAACTATTGGCTGTGTGGT
CGGGATTCATGTCCTGTATCGCTATGGGGAGGCATTGCGGCGGAGGTCGA
AGTTCAGTCGCGAGATTTGA
back to top

Coding sequence (CDS) from alignment at MCQH01000074:285231..286850-

>ATCC10864_004546-T1 ID=ATCC10864_004546-T1|Name=ATCC10864_004546-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=3108bp|location=Sequence derived from alignment at MCQH01000074:285231..286850- (Aspergillus niger ATCC 10864)
TCTAGGTTACGGTGCAGGCCCCATGTTCTTCAGTCCCCTCAGTGAGATCC
CGCGTATAGGCCGTAGCCTCCCATACGTTATATCCTTCATCTTTTACTGC
ATATTAAGCATACCCACGGCTTTGAGCCCTTCCGCTACTGGCTTCTACGT
TCTTCGCTTCCTCCAAGGATTCTTCGGAAGCCCTTGTCTCGCTACTGGTG
GCGCCTCAATTGCGGACATTTATTCCTCCGATGTATTGCCTCATGCAATG
ACGACCTGGGTACTGTCTGTCTTTTGTGCACCTGCTATTGGTGTGTTAGT
GGCTGGGTTTGCCATCCCAGTTCTTGGATGGCGGTTCTCAATGTGGGAGA
TCCTGATCGCCTCTGCTCCAATCCTCATTCTCCTTCTACTTCTCCCCGAA
ACTAGCTCAGCTACAATCTTACATCGCCGTGCCCGTTGCTTGGAAAAGAA
CAACAAATTGGGAACACACAAGTACCAGACAGTGGCTGATATCCGTCAAG
GAGATACGTCCTTCCATGCTGTCCTCCGAGAGTCGCTACTCATCCCCTCA
AAAATCACCCTTCTGGACCCGGCCATCCTATTCCTGAACTGCTACACCTC
TCTCACGTACGGCATTTACTACTCCTTCTTCGAAGCCTTCCCAATAGTAT
ACCAAGGAATATACGGTTTCAACCTAGGAGAAATGGGAGTCGCTTTCCTC
GCCATTGTGGTCGGATCGATCATTTCCTTCCTCGTCTACAATTTCTACAT
CCACCGCCTCTATGCGCCAACTGTACGAAGCAGTGGTCTTAAAAAGCCTG
AGGATGTCTTGGTGCCCGCTCTTTTTGCATGCTTTGGGCCATCTATTGGG
CTTTTCCTCTTTGGCTGGGCGGCCAGGTCCGATGTCCATTGGATTGTCCC
TACCATCGGCATTGTCATCTACCCCGGATGTGTCTTCATTATAATGCAGT
GTGTGTTTCTGTACATACCTGCTTGTCATCCACACTACGCGGCGAGTGTC
TTTGCTGCCACTGACTTTACTCGAAGTGCTTTTGCCTGTGGTTCCGTGAT
GTTCTCGCGGCCACTCTACGAGAACTTGGGCTTGGGTCCAGGGTGCAGTC
TCTTGGCTGGGTTAACTATTGGCTGTGTGGTCGGGATTCATGTCCTGTAT
CGCTATGGGGAGGCATTGCGGCGGAGGTCGAAGTTCAGTCGCGAGATTTG
AATGCCTGTCCAATGGATACGAGATAGCTTCCTCGGCCAGACTTTGCGTC
TATTTTGTCGACCATCCTGTTTGGCGTATGCCGAAGAGCAAGAAGGCTGG
ATAGATACTGTCGAGATTAAACCCCTACCGCTTGACAACGAAAAAATCAT
TTGCGTGGAATGGTATTCTGCCGATGACGAAGAGAACCCCCATAACTGGT
CTCAACTTAAGAAAGCATATATCCTTGGTGTCATTGGTGCGTACAGCTTT
GTGGTCTACATGTCCGCACCAATCTACACACCGAGCGAAAATGCCTTCAT
CGAGGAATATCATGTGAACAAAGCCGAATCATCCCTAGGACTCGCTCTTT
ACGTTCTAGGTTACGGTGCAGGCCCCATGTTCTTCAGTCCCCTCAGTGAG
ATCCCGCGTATAGGCCGTAGCCTCCCATACGTTATATCCTTCATCTTTTA
CTGCATATTAAGCATACCCACGGCTTTGAGCCCTTCCGCTACTGGCTTCT
ACGTTCTTCGCTTCCTCCAAGGATTCTTCGGAAGCCCTTGTCTCGCTACT
GGTGGCGCCTCAATTGCGGACATTTATTCCTCCGATGTATTGCCTCATGC
AATGACGACCTGGGTACTGTCTGTCTTTTGTGCACCTGCTATTGGTGTGT
TAGTGGCTGGGTTTGCCATCCCAGTTCTTGGATGGCGGTTCTCAATGTGG
GAGATCCTGATCGCCTCTGCTCCAATCCTCATTCTCCTTCTACTTCTCCC
CGAAACTAGCTCAGCTACAATCTTACATCGCCGTGCCCGTTGCTTGGAAA
AGAACAACAAATTGGGAACACACAAGTACCAGACAGTGGCTGATATCCGT
CAAGGAGATACGTCCTTCCATGCTGTCCTCCGAGAGTCGCTACTCATCCC
CTCAAAAATCACCCTTCTGGACCCGGCCATCCTATTCCTGAACTGCTACA
CCTCTCTCACGTACGGCATTTACTACTCCTTCTTCGAAGCCTTCCCAATA
GTATACCAAGGAATATACGGTTTCAACCTAGGAGAAATGGGAGTCGCTTT
CCTCGCCATTGTGGTCGGATCGATCATTTCCTTCCTCGTCTACAATTTCT
ACATCCACCGCCTCTATGCGCCAACTGTACGAAGCAGTGGTCTTAAAAAG
CCTGAGGATGTCTTGGTGCCCGCTCTTTTTGCATGCTTTGGGCCATCTAT
TGGGCTTTTCCTCTTTGGCTGGGCGGCCAGGTCCGATGTCCATTGGATTG
TCCCTACCATCGGCATTGTCATCTACCCCGGATGTGTCTTCATTATAATG
CAGTGTGTGTTTCTGTACATACCTGCTTGTCATCCACACTACGCGGCGAG
TGTCTTTGCTGCCACTGACTTTACTCGAAGTGCTTTTGCCTGTGGTTCCG
TGATGTTCTCGCGGCCACTCTACGAGAACTTGGGCTTGGGTCCAGGGTGC
AGTCTCTTGGCTGGGTTAACTATTGGCTGTGTGGTCGGGATTCATGTCCT
GTATCGCTATGGGGAGGCATTGCGGCGGAGGTCGAAGTTCAGTCGCGAGA
TTTGAATGCCTGTCCAATGGATACGAGATAGCTTCCTCGGCCAGACTTTG
CGTCTATTTTGTCGACCATCCTGTTTGGCGTATGCCGAAGAGCAAGAAGG
CTGGATAGATACTGTCGAGATTAAACCCCTACCGCTTGACAACGAAAAAA
TCATTTGCGTGGAATGGTATTCTGCCGATGACGAAGAGAACCCCCATAAC
TGGTCTCAACTTAAGAAAGCATATATCCTTGGTGTCATTGGTGCGTACAG
CTTTGTGGTCTACATGTCCGCACCAATCTACACACCGAGCGAAAATGCCT
TCATCGAGGAATATCATGTGAACAAAGCCGAATCATCCCTAGGACTCGCT
CTTTACGT
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC10864_004546ATCC10864_004546Aspergillus niger ATCC 10864gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_004546-T1ATCC10864_004546-T1-proteinAspergillus niger ATCC 10864polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_004546-T1.cdsATCC10864_004546-T1.cdsAspergillus niger ATCC 10864CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_004546-T1.exon2ATCC10864_004546-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_004546-T1.exon1ATCC10864_004546-T1.exon1Aspergillus niger ATCC 10864exon


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR036259
InterProIPR011701
PFAMPF07690
InterProIPR020846
Properties
Property NameValue
NoteSMCOG1106:major facilitator transporter
NoteantiSMASH:Cluster_1000074.1
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000074supercontigMCQH01000074:285231..286850 -
Powered by Drupal