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ATCC10864_005219-T1, ATCC10864_005219-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_005219-T1
Unique NameATCC10864_005219-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000140:425157..426383-

Legend: CDSpolypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_005219-T1 ID=ATCC10864_005219-T1|Name=ATCC10864_005219-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1227bp|location=Sequence derived from alignment at MCQH01000140:425157..426383- (Aspergillus niger ATCC 10864)
ATGGCTGAAGCAACACACCCAACTGAAACAGTAACCCCTCCTACGGAGGA
TGTTGTCGAAGATCAACAACAAACCCAGCAACAAGAAAACGAAACAACAG
AAGAAACCACCGCCCTAACAACCACCGCCGACGGCGCCGTCGAACCGCAA
AAGAAGACCAAAAAGATAATCCGACGCAAGCGCCGTCCAGCACGCCCACA
AGTCGACCCTGCGACAATCAAATCCGAACCTCCACCCCAAGTCGGCACAA
TCTTCAACATCTGGTACAACAAATGGAGCGGCGGTGACCGCGAAAACTCC
TACCTGAGCAAGACGGCAGCACCCTCACGATGCAACATCGCGCGCGACAG
CGGCTACACACGGGCCGACAAAGTGCCCGGGTCATACTTCTGCCTGTTCT
TCGCGCGCGGGATATGCCCGCGCGGCGCAGAGTGCGAGTACCTGCACCGT
TTACCAACACTGCACGACATATTTAATCCGAACGTGGATTGCTTTGGACG
GGACAAGTTCAGTGATTATCGGGATGATATGGGCGGTGTAGGATCGTTCA
TGAGACAGAATCGCACATTGTATGTGGGACGGATTCATGTGACGGATTCG
ATTGAGGAGGTGGTGGCGAGGAATTTCCAGGAATGGGGACAGATTGATCG
GATTCGGGTGCTTACGTCTCGGGGCGTTGCGTTTGTGACGTATACGAATG
AGGCGAATGCGCAATTTGCGAAAGAGGCGATGGCGCATCAAAGTTTGGAT
CATAATGAGATTCTGAATGTGAGGTGGGCTACGGTCGATCCGAATCCGTT
GGCGCAGAAGAGGGAGGCGAGACGGCTGGAAGAGCAGGCTGCTGAGGCGG
TAAGGAGGGCGTTGCCGGCGGAGTTTGTGGCTGAGTTGGAGGGTAGGGAT
CCTGAGGCCAAGAAGAGGAAGAAGATTGAGGGGAGTTATGGGTTGCAGGG
GTATGAGCCGCCGGATGAGGTGTGGTTCTCGCGTGCGAAGGAGTTGGAGG
ATGCGAATGCGATTGCGCAATTGGAGGCTCCAGAGCAGCCGCTGATGATT
GAGGGTGCCTCTGAAACTGCTGCTGCTGCTCCACAGGAGGAACAGGCCGG
AGGGATCTTCTCCAGCTCTGCTGTTGCGGCGTTGAAGGGCCTGGCTGGCG
GTGCTGTCACGACGCAGCAGGCGCCTAAAGCTGCTGGACCTCTGGTGGCG
TACGGGAGTGACGATGATAGCGAGTAA
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Coding sequence (CDS) from alignment at MCQH01000140:425157..426383-

>ATCC10864_005219-T1 ID=ATCC10864_005219-T1|Name=ATCC10864_005219-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=1227bp|location=Sequence derived from alignment at MCQH01000140:425157..426383- (Aspergillus niger ATCC 10864)
ATGGCTGAAGCAACACACCCAACTGAAACAGTAACCCCTCCTACGGAGGA
TGTTGTCGAAGATCAACAACAAACCCAGCAACAAGAAAACGAAACAACAG
AAGAAACCACCGCCCTAACAACCACCGCCGACGGCGCCGTCGAACCGCAA
AAGAAGACCAAAAAGATAATCCGACGCAAGCGCCGTCCAGCACGCCCACA
AGTCGACCCTGCGACAATCAAATCCGAACCTCCACCCCAAGTCGGCACAA
TCTTCAACATCTGGTACAACAAATGGAGCGGCGGTGACCGCGAAAACTCC
TACCTGAGCAAGACGGCAGCACCCTCACGATGCAACATCGCGCGCGACAG
CGGCTACACACGGGCCGACAAAGTGCCCGGGTCATACTTCTGCCTGTTCT
TCGCGCGCGGGATATGCCCGCGCGGCGCAGAGTGCGAGTACCTGCACCGT
TTACCAACACTGCACGACATATTTAATCCGAACGTGGATTGCTTTGGACG
GGACAAGTTCAGTGATTATCGGGATGATATGGGCGGTGTAGGATCGTTCA
TGAGACAGAATCGCACATTGTATGTGGGACGGATTCATGTGACGGATTCG
ATTGAGGAGGTGGTGGCGAGGAATTTCCAGGAATGGGGACAGATTGATCG
GATTCGGGTGCTTACGTCTCGGGGCGTTGCGTTTGTGACGTATACGAATG
AGGCGAATGCGCAATTTGCGAAAGAGGCGATGGCGCATCAAAGTTTGGAT
CATAATGAGATTCTGAATGTGAGGTGGGCTACGGTCGATCCGAATCCGTT
GGCGCAGAAGAGGGAGGCGAGACGGCTGGAAGAGCAGGCTGCTGAGGCGG
TAAGGAGGGCGTTGCCGGCGGAGTTTGTGGCTGAGTTGGAGGGTAGGGAT
CCTGAGGCCAAGAAGAGGAAGAAGATTGAGGGGAGTTATGGGTTGCAGGG
GTATGAGCCGCCGGATGAGGTGTGGTTCTCGCGTGCGAAGGAGTTGGAGG
ATGCGAATGCGATTGCGCAATTGGAGGCTCCAGAGCAGCCGCTGATGATT
GAGGGTGCCTCTGAAACTGCTGCTGCTGCTCCACAGGAGGAACAGGCCGG
AGGGATCTTCTCCAGCTCTGCTGTTGCGGCGTTGAAGGGCCTGGCTGGCG
GTGCTGTCACGACGCAGCAGGCGCCTAAAGCTGCTGGACCTCTGGTGGCG
TACGGGAGTGACGATGATAGCGAGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0045292mRNA cis splicing, via spliceosome
GO:0000387spliceosomal snRNP assembly
Vocabulary: Molecular Function
TermDefinition
GO:0036002pre-mRNA binding
GO:0017070U6 snRNA binding
GO:0046872metal ion binding
GO:0003676nucleic acid binding
GO:0003723RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CWC2ATCC10864_005219Aspergillus niger ATCC 10864gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_005219-T1.cdsATCC10864_005219-T1.cdsAspergillus niger ATCC 10864CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_005219-T1.exon1ATCC10864_005219-T1.exon1Aspergillus niger ATCC 10864exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_005219-T1ATCC10864_005219-T1-proteinAspergillus niger ATCC 10864polypeptide


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR039171
InterProIPR034181
InterProIPR012677
InterProIPR000571
InterProIPR039173
InterProIPR032297
PFAMPF00642
PFAMPF16131
PFAMPF00076
InterProIPR000504
InterProIPR036855
InterProIPR035979
Properties
Property NameValue
ProductPre-mRNA-splicing factor
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000140supercontigMCQH01000140:425157..426383 -
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