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ATCC10864_005380-T1, ATCC10864_005380-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_005380-T1
Unique NameATCC10864_005380-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000142:152852..154405-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_005380-T1 ID=ATCC10864_005380-T1|Name=ATCC10864_005380-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1554bp|location=Sequence derived from alignment at MCQH01000142:152852..154405- (Aspergillus niger ATCC 10864)
ATGAACGGCGTTCAGGATTCAACCTCTGCTGCGGCCTCGTCCCAGTCTGC
GCAGAGGCAGGTGCGCGTGCAGCTCGTTAGCAAGCAAGAAGACATTGCGC
TGCCTGAGAGCACCGGCCCCATTCTGGTTCCCACAGGTACGAATGCATTT
TGGCAACTTACTGCTAGTCTGCTTTGTATACACTTGTGTGCTCACTGATT
TTTGTAATATTCTGTAGGATTGCGGAGATATGCACTTTCTACCCTGGTGA
ATAATCTCTTGGGAAACGACAAGCCGGTGCCATTTGAGTTTTTGATTAAT
GGCGCATTCCTTCGGACTTCGATCGATGAATACTTGACGGCCAATGGCAT
ATCTGCGGAAACCACTCTGGAAATTGAGTACATAAGAGCGTTGATTCCCC
CGCTCCATATTGCCTCCTTCGAGCATGATGACTGGGTTGGCTCTGTGGAT
GTCCTCTCTGCGACCTCGCTTGCTACCTCTTGGGCTTCTGCGGTCGTCTC
TCCAGGCCAGGAGAGAATCCTATCGGGAAGCTATGACGGATTGCTTCGTG
TGTGGAATATGTCCTCCCAGATCGTCGCAACCTCACCGTCCCCGGCTGAT
GGAGGGCACGGTGCGTCCATCAAAGCCGCTAAGTTCATCTCGCCGAATTC
GATTGTGTCGGCTGGCCTTGATCGCACCGTTCGACTCTGGAAGTACAATG
AAAGCGATGATGGATTCTCAGGAAAGATCACTCCGCAGATTGAGCTCTAC
GGACACAAATCTGGTATCAACTCGTTGGCTGTGCATGCCCCCTCGAACCG
TATTCTCTCCGCCTCGTCAGACCACAGCATTGGCTTCTGGTCGACAAAGA
AGTCAGATGCCCCAGCTGCCCCCGAGAACCTAGTTCCATCTGCTGCGTCA
CGGAGCTCCAAGCGCAGAAAGGTGAGCTCGTCCGTCAGCATCCCGCAGCG
TGGCCCGCTTGCGCTGTTGTCTTCCCACACTGCGCCAGTGTCAGCTGCCA
TTTTTGACACAAACGACTCGACTGTCGGTTATTCTACTTCGTGGGATCAC
TCTCTGCGTACATGGGATCTGGTCACGGCCGCTTTAGTAGACACCAGATC
GACATCCCATTCGTTGCTATCTCTCGAGCATCTCCCCGAGCACCACCTTC
TTGCGACAGGAACTTCCGCTCGCCACATCACTCTCATCGATCCTCGTACA
TCAGCGACAACCATCTCCGCCATGACCCTCAGAGGTCACACCAATGCCGT
GGTTTCGCTGTCCCGCGATCCCCACAGCAGCTACGGTCTCATCAGTGGTA
GTCACGACGGTACATGTCGAATCTGGGATATCCGTGCTACGAAGACGGAC
AAGGACGGTGTTGTTGGTGAGAGCGTGTATTCGATTACTCGGAGAAGCTT
GGAAGAGCAAGGTAAAGCGGATGCTAAGCGAGTAGGTGGAGAGGGAGTCA
AGGTCTTCAGTGTGTGCTGGGACCGCTCGGTTGGCATTGTCAGCGCCGGT
GAGGATAAGAGGATTCAGATCAACCGGGGTGAAGGCGTCTTGTCTTCCGC
ATAA
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Coding sequence (CDS) from alignment at MCQH01000142:152852..154405-

>ATCC10864_005380-T1 ID=ATCC10864_005380-T1|Name=ATCC10864_005380-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=2946bp|location=Sequence derived from alignment at MCQH01000142:152852..154405- (Aspergillus niger ATCC 10864)
GATTGCGGAGATATGCACTTTCTACCCTGGTGAATAATCTCTTGGGAAAC
GACAAGCCGGTGCCATTTGAGTTTTTGATTAATGGCGCATTCCTTCGGAC
TTCGATCGATGAATACTTGACGGCCAATGGCATATCTGCGGAAACCACTC
TGGAAATTGAGTACATAAGAGCGTTGATTCCCCCGCTCCATATTGCCTCC
TTCGAGCATGATGACTGGGTTGGCTCTGTGGATGTCCTCTCTGCGACCTC
GCTTGCTACCTCTTGGGCTTCTGCGGTCGTCTCTCCAGGCCAGGAGAGAA
TCCTATCGGGAAGCTATGACGGATTGCTTCGTGTGTGGAATATGTCCTCC
CAGATCGTCGCAACCTCACCGTCCCCGGCTGATGGAGGGCACGGTGCGTC
CATCAAAGCCGCTAAGTTCATCTCGCCGAATTCGATTGTGTCGGCTGGCC
TTGATCGCACCGTTCGACTCTGGAAGTACAATGAAAGCGATGATGGATTC
TCAGGAAAGATCACTCCGCAGATTGAGCTCTACGGACACAAATCTGGTAT
CAACTCGTTGGCTGTGCATGCCCCCTCGAACCGTATTCTCTCCGCCTCGT
CAGACCACAGCATTGGCTTCTGGTCGACAAAGAAGTCAGATGCCCCAGCT
GCCCCCGAGAACCTAGTTCCATCTGCTGCGTCACGGAGCTCCAAGCGCAG
AAAGGTGAGCTCGTCCGTCAGCATCCCGCAGCGTGGCCCGCTTGCGCTGT
TGTCTTCCCACACTGCGCCAGTGTCAGCTGCCATTTTTGACACAAACGAC
TCGACTGTCGGTTATTCTACTTCGTGGGATCACTCTCTGCGTACATGGGA
TCTGGTCACGGCCGCTTTAGTAGACACCAGATCGACATCCCATTCGTTGC
TATCTCTCGAGCATCTCCCCGAGCACCACCTTCTTGCGACAGGAACTTCC
GCTCGCCACATCACTCTCATCGATCCTCGTACATCAGCGACAACCATCTC
CGCCATGACCCTCAGAGGTCACACCAATGCCGTGGTTTCGCTGTCCCGCG
ATCCCCACAGCAGCTACGGTCTCATCAGTGGTAGTCACGACGGTACATGT
CGAATCTGGGATATCCGTGCTACGAAGACGGACAAGGACGGTGTTGTTGG
TGAGAGCGTGTATTCGATTACTCGGAGAAGCTTGGAAGAGCAAGGTAAAG
CGGATGCTAAGCGAGTAGGTGGAGAGGGAGTCAAGGTCTTCAGTGTGTGC
TGGGACCGCTCGGTTGGCATTGTCAGCGCCGGTGAGGATAAGAGGATTCA
GATCAACCGGGGTGAAGGCGTCTTGTCTTCCGCATAAATGAACGGCGTTC
AGGATTCAACCTCTGCTGCGGCCTCGTCCCAGTCTGCGCAGAGGCAGGTG
CGCGTGCAGCTCGTTAGCAAGCAAGAAGACATTGCGCTGCCTGAGAGCAC
CGGCCCCATTCTGGTTCCCACAGGATTGCGGAGATATGCACTTTCTACCC
TGGTGAATAATCTCTTGGGAAACGACAAGCCGGTGCCATTTGAGTTTTTG
ATTAATGGCGCATTCCTTCGGACTTCGATCGATGAATACTTGACGGCCAA
TGGCATATCTGCGGAAACCACTCTGGAAATTGAGTACATAAGAGCGTTGA
TTCCCCCGCTCCATATTGCCTCCTTCGAGCATGATGACTGGGTTGGCTCT
GTGGATGTCCTCTCTGCGACCTCGCTTGCTACCTCTTGGGCTTCTGCGGT
CGTCTCTCCAGGCCAGGAGAGAATCCTATCGGGAAGCTATGACGGATTGC
TTCGTGTGTGGAATATGTCCTCCCAGATCGTCGCAACCTCACCGTCCCCG
GCTGATGGAGGGCACGGTGCGTCCATCAAAGCCGCTAAGTTCATCTCGCC
GAATTCGATTGTGTCGGCTGGCCTTGATCGCACCGTTCGACTCTGGAAGT
ACAATGAAAGCGATGATGGATTCTCAGGAAAGATCACTCCGCAGATTGAG
CTCTACGGACACAAATCTGGTATCAACTCGTTGGCTGTGCATGCCCCCTC
GAACCGTATTCTCTCCGCCTCGTCAGACCACAGCATTGGCTTCTGGTCGA
CAAAGAAGTCAGATGCCCCAGCTGCCCCCGAGAACCTAGTTCCATCTGCT
GCGTCACGGAGCTCCAAGCGCAGAAAGGTGAGCTCGTCCGTCAGCATCCC
GCAGCGTGGCCCGCTTGCGCTGTTGTCTTCCCACACTGCGCCAGTGTCAG
CTGCCATTTTTGACACAAACGACTCGACTGTCGGTTATTCTACTTCGTGG
GATCACTCTCTGCGTACATGGGATCTGGTCACGGCCGCTTTAGTAGACAC
CAGATCGACATCCCATTCGTTGCTATCTCTCGAGCATCTCCCCGAGCACC
ACCTTCTTGCGACAGGAACTTCCGCTCGCCACATCACTCTCATCGATCCT
CGTACATCAGCGACAACCATCTCCGCCATGACCCTCAGAGGTCACACCAA
TGCCGTGGTTTCGCTGTCCCGCGATCCCCACAGCAGCTACGGTCTCATCA
GTGGTAGTCACGACGGTACATGTCGAATCTGGGATATCCGTGCTACGAAG
ACGGACAAGGACGGTGTTGTTGGTGAGAGCGTGTATTCGATTACTCGGAG
AAGCTTGGAAGAGCAAGGTAAAGCGGATGCTAAGCGAGTAGGTGGAGAGG
GAGTCAAGGTCTTCAGTGTGTGCTGGGACCGCTCGGTTGGCATTGTCAGC
GCCGGTGAGGATAAGAGGATTCAGATCAACCGGGGTGAAGGCGTCTTGTC
TTCCGCATAAATGAACGGCGTTCAGGATTCAACCTCTGCTGCGGCCTCGT
CCCAGTCTGCGCAGAGGCAGGTGCGCGTGCAGCTCGTTAGCAAGCAAGAA
GACATTGCGCTGCCTGAGAGCACCGGCCCCATTCTGGTTCCCACAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
YTM1ATCC10864_005380Aspergillus niger ATCC 10864gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_005380-T1ATCC10864_005380-T1-proteinAspergillus niger ATCC 10864polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_005380-T1.cdsATCC10864_005380-T1.cdsAspergillus niger ATCC 10864CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_005380-T1.exon2ATCC10864_005380-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_005380-T1.exon1ATCC10864_005380-T1.exon1Aspergillus niger ATCC 10864exon


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR015943
PFAMPF08154
InterProIPR017986
InterProIPR019775
InterProIPR001680
InterProIPR012972
InterProIPR036322
InterProIPR028599
InterProIPR020472
PFAMPF00400
Properties
Property NameValue
Productribosome bioproteinsis protein ytm1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000142supercontigMCQH01000142:152852..154405 -
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