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ATCC10864_005389-T1, ATCC10864_005389-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_005389-T1
Unique NameATCC10864_005389-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000142:176881..178527+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_005389-T1 ID=ATCC10864_005389-T1|Name=ATCC10864_005389-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1647bp|location=Sequence derived from alignment at MCQH01000142:176881..178527+ (Aspergillus niger ATCC 10864)
ATGTCGTCCTCACAATCGCCGCAGAACAGCAATGCGGACTCCAGTTCCTC
AGCGAAGCCATTCTCTCTATCATTAGGCGGAAACTCCACGAAAGCACCAG
CAAACGGCCAGCCGAAGAAAACGTCCTTCAACATTCAAGGCGCGGCGCGT
TCCACCGACTCACCCAGCCGAACACTCGCGCGCCGACCTCACCACCTGCA
CGATGACGAAGAATCCGATGAAGAAGCCGCGCCCACTCATGAAGCCGTCA
CCGGGTTCGACACCTTAACGGGAACGGCTATTCCCGCCAACAAGGTGGAA
GAAAAGCGCGAGCTGATCATTCCCGTCGCTGGAAATAATAATTGGAGGGA
CCGTCCGGGCGTCAATCTCCGGAAACCTAAGGGCAAGAACCTCTTGCCAA
AGGAGGTCCAGGCCATTCAGGAAGCTCAGAAACGGGGTGAAGTTGCTGGA
GATAATGTTGAGACAGAGCGTCCGAGTATGGCTTATGGGTTGAGTTTTGC
GCAGCCGGCTTCGCAGGATTCGGCCCAGGCGGCGGATAATGATCGCCCGA
TGAAGGATGTTACTGAGCCTGCTGCTACTCCTGCTGCCGAGGTAGAACGC
AAGCCACTCACGCAGGATGAGATTGCCTTGCAGGCGCTTATTCGAGAGAC
GAAGGGGGAGCCGGAGCGCAGGTCGGATCTTGTTATTGAGTCGGTTAATC
GAGATGACGATGATCGGGCGGGCGGGCGATATGATGAGACGTCTTCTTTT
CGAGCGGATGTTGCGGCGCGCCCGGAGTCTGCGAGCTTGGATCAGTATAA
CGCAATCCCTGTTGAGGAGTTTGGCGCTGCGCTACTTCGTGGTATGGGGT
GGAAGGAGGGTCAAGCTGTAGGAAGAGGAAAATACGGTGGTTCTGCAAAT
CAGGACAATAAGCCGCGGGTCCCGGAGCGTCGTCCTGGGTTCCTGGGGAT
CGGAGCGAAAGATGTGTCTGGGGGGAAGGGTGCAGAGGCCGAGCTCGGTG
CATGGGGCAAGGCTGCCATGCGGAAAGGGTCCAGGAAGGGAGGGAAGGAG
GGCGAGTCCAATCCGGAAGGTGTATATATGCCCATCATGATGCGAAACAA
GCAGACCGGCGAGTTCATAACAGAAGAGGAGCTCGCGGCGCAACGGAAAG
AGGCCAGGAAACGGGGCGACGATGACGAATGGAAGCAACGACGAGATCGC
AATTTGGAGAAGAGTGGCCGTGATAGGGATCGTGATCGTGACTCACGGCG
TCGCGACTACGATGACGATGAAACTGATCGCTATGACAGACGGAGGACCG
GATCTTCAAGGAGAGACCGGAGTTTGTCATCCAGTGACCGGCATTCAAGA
CGGCGCAGATACGAAGATGAAGATAGCGACAGTCGTGATGACCGCTACTA
CCGGGACAGAGACCGTGACCGGGATCGTGACTATCGCCGGGATCGTGATC
GAAATGGAGATCGGGAACGAGAGCGTGACAGGGACAGAGATCGGGATCGG
GACCGCAGCAGACGGTATCGTGATGATGATCGCCATAGTAGCTCAAGGCA
TTCTTCGTCGCATACATCGAGTAGACATCGTGACCGGGATAGGGAGCGAG
ACAGTGATCGCGACTCCCGCCGGAGAAGGAGAGACGAGGATCGATGA
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Coding sequence (CDS) from alignment at MCQH01000142:176881..178527+

>ATCC10864_005389-T1 ID=ATCC10864_005389-T1|Name=ATCC10864_005389-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=1647bp|location=Sequence derived from alignment at MCQH01000142:176881..178527+ (Aspergillus niger ATCC 10864)
ATGTCGTCCTCACAATCGCCGCAGAACAGCAATGCGGACTCCAGTTCCTC
AGCGAAGCCATTCTCTCTATCATTAGGCGGAAACTCCACGAAAGCACCAG
CAAACGGCCAGCCGAAGAAAACGTCCTTCAACATTCAAGGCGCGGCGCGT
TCCACCGACTCACCCAGCCGAACACTCGCGCGCCGACCTCACCACCTGCA
CGATGACGAAGAATCCGATGAAGAAGCCGCGCCCACTCATGAAGCCGTCA
CCGGGTTCGACACCTTAACGGGAACGGCTATTCCCGCCAACAAGGTGGAA
GAAAAGCGCGAGCTGATCATTCCCGTCGCTGGAAATAATAATTGGAGGGA
CCGTCCGGGCGTCAATCTCCGGAAACCTAAGGGCAAGAACCTCTTGCCAA
AGGAGGTCCAGGCCATTCAGGAAGCTCAGAAACGGGGTGAAGTTGCTGGA
GATAATGTTGAGACAGAGCGTCCGAGTATGGCTTATGGGTTGAGTTTTGC
GCAGCCGGCTTCGCAGGATTCGGCCCAGGCGGCGGATAATGATCGCCCGA
TGAAGGATGTTACTGAGCCTGCTGCTACTCCTGCTGCCGAGGTAGAACGC
AAGCCACTCACGCAGGATGAGATTGCCTTGCAGGCGCTTATTCGAGAGAC
GAAGGGGGAGCCGGAGCGCAGGTCGGATCTTGTTATTGAGTCGGTTAATC
GAGATGACGATGATCGGGCGGGCGGGCGATATGATGAGACGTCTTCTTTT
CGAGCGGATGTTGCGGCGCGCCCGGAGTCTGCGAGCTTGGATCAGTATAA
CGCAATCCCTGTTGAGGAGTTTGGCGCTGCGCTACTTCGTGGTATGGGGT
GGAAGGAGGGTCAAGCTGTAGGAAGAGGAAAATACGGTGGTTCTGCAAAT
CAGGACAATAAGCCGCGGGTCCCGGAGCGTCGTCCTGGGTTCCTGGGGAT
CGGAGCGAAAGATGTGTCTGGGGGGAAGGGTGCAGAGGCCGAGCTCGGTG
CATGGGGCAAGGCTGCCATGCGGAAAGGGTCCAGGAAGGGAGGGAAGGAG
GGCGAGTCCAATCCGGAAGGTGTATATATGCCCATCATGATGCGAAACAA
GCAGACCGGCGAGTTCATAACAGAAGAGGAGCTCGCGGCGCAACGGAAAG
AGGCCAGGAAACGGGGCGACGATGACGAATGGAAGCAACGACGAGATCGC
AATTTGGAGAAGAGTGGCCGTGATAGGGATCGTGATCGTGACTCACGGCG
TCGCGACTACGATGACGATGAAACTGATCGCTATGACAGACGGAGGACCG
GATCTTCAAGGAGAGACCGGAGTTTGTCATCCAGTGACCGGCATTCAAGA
CGGCGCAGATACGAAGATGAAGATAGCGACAGTCGTGATGACCGCTACTA
CCGGGACAGAGACCGTGACCGGGATCGTGACTATCGCCGGGATCGTGATC
GAAATGGAGATCGGGAACGAGAGCGTGACAGGGACAGAGATCGGGATCGG
GACCGCAGCAGACGGTATCGTGATGATGATCGCCATAGTAGCTCAAGGCA
TTCTTCGTCGCATACATCGAGTAGACATCGTGACCGGGATAGGGAGCGAG
ACAGTGATCGCGACTCCCGCCGGAGAAGGAGAGACGAGGATCGATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SPP2ATCC10864_005389Aspergillus niger ATCC 10864gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_005389-T1.exon1ATCC10864_005389-T1.exon1Aspergillus niger ATCC 10864exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_005389-T1.cdsATCC10864_005389-T1.cdsAspergillus niger ATCC 10864CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_005389-T1ATCC10864_005389-T1-proteinAspergillus niger ATCC 10864polypeptide


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR026822
InterProIPR000467
PFAMPF12656
Properties
Property NameValue
ProductPre-mRNA-splicing factor spp2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000142supercontigMCQH01000142:176881..178527 +
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