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ATCC10864_006308-T1, ATCC10864_006308-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_006308-T1
Unique NameATCC10864_006308-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000166:122605..123880+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_006308-T1 ID=ATCC10864_006308-T1|Name=ATCC10864_006308-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1276bp|location=Sequence derived from alignment at MCQH01000166:122605..123880+ (Aspergillus niger ATCC 10864)
ATGGCTGCTGTCCAGGGAGCTATTTCGAAGCGCCGCAAGTTCGTCGCCGA
CGGTGTCTTCTATGCCGAGCTGAACGAGTTCTTCCAGCGCGAGCTGGCTG
AGGAGGGATACTCCGGCGTCGAAGTCCGTGTCACTCCCACCGTCACCGAC
ATCAGTACGTCCGCCCGATATTTCATTTTGCATTTGATTCCAGATCCTGT
GTGTTGTGTTGGAAAAGGCCGGAAATTGGAGATTGGAAGAATCGACCGGG
CGAAAGAATGGTGATCCGGGAGGAGGAAAAGAAAAACAGTTATCGGAATA
CGGCCGGGAATATCAACCAACCACGGGGAACTACTGGAATTGGAGACAAT
TTTATATACAAAGGAAGATGGAATATGTGCCAGTTGCTAACGGATGCTTT
CTTTACAGTCATCCGTGCCACCCACACCCAGGAGGTTCTCGGTGAGCAGG
GCCGCCGCATCCGCGAGCTCACCTCCCTCATCCAGAAGCGTTTCAAGTTC
CCCGAGAACTCCGTTTCCCTCTATGCCGCCAAGGTCCAGAACCGCGGTCT
CTCCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTC
TGGCCGTCCGCCGTGCCTGCTACGGTGTTCTCCGTTTCATCATGGAGAGC
GGTGCCAAGGGTTGCGAGGTCGTCGTCTCCGGAAAGCTCCGTGCTGCCCG
TGCCAAGTCCATGAAGTTCACTGTACGTCTACCAACAGCGATTGATTTTG
TTTTTCGAATGGTCGGATCGGTCCCGAAGCAGTGGTGGAATTTGCGCATA
TCCAACGACAACGATGCCTACTACGATCTGCAACAACGAAGCAACTGTGC
AAGGACCGGACCGAAGCTCTACACCATTCGAAACACTCCATCATATGCAT
GATATAACAGTATCAGAAAACTAACAACCATTCTTCTCAATAGGACGGTT
TCATGATCCACTCCGGTCAGCCCGCCAAGGAATTCATCGACAGCGCTACC
CGCCACGTTCTCCTCCGCCAGGGTGTCCTCGGTATCAAGGTTAAGATCAT
GCGCGGTTCCGACCCCGAGGGCAAGGCCGGTCCCCAGAAGACTCTCCCCG
ATGCCGTCACCATCATCGAGCCCAAGGAGGAGCAGCCCGTCCTGCAGCCC
ATGAGCCAGGACTACGGCGCCAAGGCTCTTGCCGCTCAGCAGGCCGCCGA
GCAGCAGCGTCTGGCCGAGCAGCAGGCCACCGAGGCCCAGGAGGGTGCCG
GTGCCGAGGCTTACGCCCAGGAGTAA
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Coding sequence (CDS) from alignment at MCQH01000166:122605..123880+

>ATCC10864_006308-T1 ID=ATCC10864_006308-T1|Name=ATCC10864_006308-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=2403bp|location=Sequence derived from alignment at MCQH01000166:122605..123880+ (Aspergillus niger ATCC 10864)
ATGGCTGCTGTCCAGGGAGCTATTTCGAAGCGCCGCAAGTTCGTCGCCGA
CGGTGTCTTCTATGCCGAGCTGAACGAGTTCTTCCAGCGCGAGCTGGCTG
AGGAGGGATACTCCGGCGTCGAAGTCCGTGTCACTCCCACCGTCACCGAC
ATCATCATCCGTGCCACCCACACCCAGGAGGTTCTCGGTGAGCAGGGCCG
CCGCATCCGCGAGCTCACCTCCCTCATCCAGAAGCGTTTCAAGTTCCCCG
AGAACTCCGTTTCCCTCTATGCCGCCAAGGTCCAGAACCGCGGTCTCTCC
GCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTCTGGC
CGTCCGCCGTGCCTGCTACGGTGTTCTCCGTTTCATCATGGAGAGCGGTG
CCAAGGGTTGCGAGGTCGTCGTCTCCGGAAAGCTCCGTGCTGCCCGTGCC
AAGTCCATGAAGTTCACTGACGGTTTCATGATCCACTCCGGTCAGCCCGC
CAAGGAATTCATCGACAGCGCTACCCGCCACGTTCTCCTCCGCCAGGGTG
TCCTCGGTATCAAGGTTAAGATCATGCGCGGTTCCGACCCCGAGGGCAAG
GCCGGTCCCCAGAAGACTCTCCCCGATGCCGTCACCATCATCGAGCCCAA
GGAGGAGCAGCCCGTCCTGCAGCCCATGAGCCAGGACTACGGCGCCAAGG
CTCTTGCCGCTCAGCAGGCCGCCGAGCAGCAGCGTCTGGCCGAGCAGCAG
GCCACCGAGGCCCAGGAGGGTGCCGGTGCCGAGGCTTACGCCCAGGAGTA
AATGGCTGCTGTCCAGGGAGCTATTTCGAAGCGCCGCAAGTTCGTCGCCG
ACGGTGTCTTCTATGCCGAGCTGAACGAGTTCTTCCAGCGCGAGCTGGCT
GAGGAGGGATACTCCGGCGTCGAAGTCCGTGTCACTCCCACCGTCACCGA
CATCATCATCCGTGCCACCCACACCCAGGAGGTTCTCGGTGAGCAGGGCC
GCCGCATCCGCGAGCTCACCTCCCTCATCCAGAAGCGTTTCAAGTTCCCC
GAGAACTCCGTTTCCCTCTATGCCGCCAAGGTCCAGAACCGCGGTCTCTC
CGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTCTGG
CCGTCCGCCGTGCCTGCTACGGTGTTCTCCGTTTCATCATGGAGAGCGGT
GCCAAGGGTTGCGAGGTCGTCGTCTCCGGAAAGCTCCGTGCTGCCCGTGC
CAAGTCCATGAAGTTCACTGACGGTTTCATGATCCACTCCGGTCAGCCCG
CCAAGGAATTCATCGACAGCGCTACCCGCCACGTTCTCCTCCGCCAGGGT
GTCCTCGGTATCAAGGTTAAGATCATGCGCGGTTCCGACCCCGAGGGCAA
GGCCGGTCCCCAGAAGACTCTCCCCGATGCCGTCACCATCATCGAGCCCA
AGGAGGAGCAGCCCGTCCTGCAGCCCATGAGCCAGGACTACGGCGCCAAG
GCTCTTGCCGCTCAGCAGGCCGCCGAGCAGCAGCGTCTGGCCGAGCAGCA
GGCCACCGAGGCCCAGGAGGGTGCCGGTGCCGAGGCTTACGCCCAGGAGT
AAATGGCTGCTGTCCAGGGAGCTATTTCGAAGCGCCGCAAGTTCGTCGCC
GACGGTGTCTTCTATGCCGAGCTGAACGAGTTCTTCCAGCGCGAGCTGGC
TGAGGAGGGATACTCCGGCGTCGAAGTCCGTGTCACTCCCACCGTCACCG
ACATCATCATCCGTGCCACCCACACCCAGGAGGTTCTCGGTGAGCAGGGC
CGCCGCATCCGCGAGCTCACCTCCCTCATCCAGAAGCGTTTCAAGTTCCC
CGAGAACTCCGTTTCCCTCTATGCCGCCAAGGTCCAGAACCGCGGTCTCT
CCGCCGTCGCTCAGTGCGAGTCCCTCCGCTACAAGCTCCTCAACGGTCTG
GCCGTCCGCCGTGCCTGCTACGGTGTTCTCCGTTTCATCATGGAGAGCGG
TGCCAAGGGTTGCGAGGTCGTCGTCTCCGGAAAGCTCCGTGCTGCCCGTG
CCAAGTCCATGAAGTTCACTGACGGTTTCATGATCCACTCCGGTCAGCCC
GCCAAGGAATTCATCGACAGCGCTACCCGCCACGTTCTCCTCCGCCAGGG
TGTCCTCGGTATCAAGGTTAAGATCATGCGCGGTTCCGACCCCGAGGGCA
AGGCCGGTCCCCAGAAGACTCTCCCCGATGCCGTCACCATCATCGAGCCC
AAGGAGGAGCAGCCCGTCCTGCAGCCCATGAGCCAGGACTACGGCGCCAA
GGCTCTTGCCGCTCAGCAGGCCGCCGAGCAGCAGCGTCTGGCCGAGCAGC
AGGCCACCGAGGCCCAGGAGGGTGCCGGTGCCGAGGCTTACGCCCAGGAG
TAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS3ATCC10864_006308Aspergillus niger ATCC 10864gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_006308-T1.exon1ATCC10864_006308-T1.exon1Aspergillus niger ATCC 10864exon
ATCC10864_006308-T1.exon2ATCC10864_006308-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_006308-T1.exon3ATCC10864_006308-T1.exon3Aspergillus niger ATCC 10864exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_006308-T1.cdsATCC10864_006308-T1.cdsAspergillus niger ATCC 10864CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_006308-T1ATCC10864_006308-T1-proteinAspergillus niger ATCC 10864polypeptide


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR005703
InterProIPR036419
PFAMPF07650
InterProIPR015946
PFAMPF00189
InterProIPR018280
InterProIPR004044
InterProIPR009019
InterProIPR001351
Properties
Property NameValue
NoteBUSCO:EOG092647L7
Product40S ribosomal protein S3
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000166supercontigMCQH01000166:122605..123880 +
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