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ATCC10864_007064-T1, ATCC10864_007064-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_007064-T1
Unique NameATCC10864_007064-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000170:651282..652364+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_007064-T1 ID=ATCC10864_007064-T1|Name=ATCC10864_007064-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1083bp|location=Sequence derived from alignment at MCQH01000170:651282..652364+ (Aspergillus niger ATCC 10864)
ATGGGTCGCCTTCACTCTAAGGGAAAGGGCATTTCGTCCTCCGCTCTCCC
CTACTCTCGCACTCCCCCGAGCTGGTTCAAGGCTTCCACCGAGCAGGTTG
TTGAGCAGATCTGCAAGCTCGCCAAGAAGGGTGCTACCCCCTCCCAGATC
GGTGTTGTCCTCCGTGACAGCCACGGTGTTGCCCAGGTCAAGACTGTCAC
TGGTAAGATTCCCCTCTCAATTCTCAAATTGCGGGGATGGGAAGGATACT
AATATGTGGATGAATAGGTAACAAGATCCTCCGTATCTTGAAGTCCAACG
GTACGACATCACCGACATGTTCCCTTTCACCAGTCGCACCAGTTATATGA
GCATGTTGTGGATGTGAATATGGCAGCGGAAATGGAACGGGCGCGAGCAG
AGAAGCAGCTAGGACCCGGATTGGAATATATCCGGCGATTCGATTTCAGC
CAGGTTACGGGTTGATTGATGGACAACGATACGATATATTCTGCACGGAA
GTGAAGAAGAAGAAAGAGAACGAGGTTGAAACATACCCGGAATCGTTCTC
GACTCTGTATCGACATGGACACTCGCAAACCTACAGCCAATCGCAATCGC
AGCAATCCCGGCGCTCTCTGCCTCCCACCATCTCTACACCGCACACCCAC
AACATGTCCATAAAACTGGAGGGCACCAGAAGCAAAACATCAACACCAAC
TCGCAGAAATGCAGTTGGATGTTGGAAGTTTCTTTTGCGTGATCCCGTAT
GCCTCTGCTTGGTCAAACCACAGGCTGACAGAGTGATCTTTTAAACAGGC
CTTGCCCCCGAGCTCCCCGAGGACCTGTACCACCTCATCAAGAAGGTATG
CCGTTCCCCATTTATCTGAAAACACGATGGTAGATTGAATACTAACAAAC
TGGTATTAGGCCGTCGCCGTCCGCAAGCACCTTGAGCGTAACCGCAAGGA
CAAGGACAGCAAGTTCCGCCTGATTCTCATCGAGTCTCGTATCCACCGTC
TGTCTCGTTACTACAAGTCCGTCGGTGTCCTCCCCCCCACCTGGCGTTAC
GAGTCCGCCACTGCTTCCACCCTCGTTGCTTAA
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Coding sequence (CDS) from alignment at MCQH01000170:651282..652364+

>ATCC10864_007064-T1 ID=ATCC10864_007064-T1|Name=ATCC10864_007064-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=1824bp|location=Sequence derived from alignment at MCQH01000170:651282..652364+ (Aspergillus niger ATCC 10864)
ATGGGTCGCCTTCACTCTAAGGGAAAGGGCATTTCGTCCTCCGCTCTCCC
CTACTCTCGCACTCCCCCGAGCTGGTTCAAGGCTTCCACCGAGCAGGTTG
TTGAGCAGATCTGCAAGCTCGCCAAGAAGGGTGCTACCCCCTCCCAGATC
GGTGTTGTCCTCCGTGACAGCCACGGTGTTGCCCAGGTCAAGACTGTCAC
TGGTAACAAGATCCTCCGTATCTTGAAGTCCAACGGCCTTGCCCCCGAGC
TCCCCGAGGACCTGTACCACCTCATCAAGAAGGCCGTCGCCGTCCGCAAG
CACCTTGAGCGTAACCGCAAGGACAAGGACAGCAAGTTCCGCCTGATTCT
CATCGAGTCTCGTATCCACCGTCTGTCTCGTTACTACAAGTCCGTCGGTG
TCCTCCCCCCCACCTGGCGTTACGAGTCCGCCACTGCTTCCACCCTCGTT
GCTTAAATGGGTCGCCTTCACTCTAAGGGAAAGGGCATTTCGTCCTCCGC
TCTCCCCTACTCTCGCACTCCCCCGAGCTGGTTCAAGGCTTCCACCGAGC
AGGTTGTTGAGCAGATCTGCAAGCTCGCCAAGAAGGGTGCTACCCCCTCC
CAGATCGGTGTTGTCCTCCGTGACAGCCACGGTGTTGCCCAGGTCAAGAC
TGTCACTGGTAACAAGATCCTCCGTATCTTGAAGTCCAACGGCCTTGCCC
CCGAGCTCCCCGAGGACCTGTACCACCTCATCAAGAAGGCCGTCGCCGTC
CGCAAGCACCTTGAGCGTAACCGCAAGGACAAGGACAGCAAGTTCCGCCT
GATTCTCATCGAGTCTCGTATCCACCGTCTGTCTCGTTACTACAAGTCCG
TCGGTGTCCTCCCCCCCACCTGGCGTTACGAGTCCGCCACTGCTTCCACC
CTCGTTGCTTAAATGGGTCGCCTTCACTCTAAGGGAAAGGGCATTTCGTC
CTCCGCTCTCCCCTACTCTCGCACTCCCCCGAGCTGGTTCAAGGCTTCCA
CCGAGCAGGTTGTTGAGCAGATCTGCAAGCTCGCCAAGAAGGGTGCTACC
CCCTCCCAGATCGGTGTTGTCCTCCGTGACAGCCACGGTGTTGCCCAGGT
CAAGACTGTCACTGGTAACAAGATCCTCCGTATCTTGAAGTCCAACGGCC
TTGCCCCCGAGCTCCCCGAGGACCTGTACCACCTCATCAAGAAGGCCGTC
GCCGTCCGCAAGCACCTTGAGCGTAACCGCAAGGACAAGGACAGCAAGTT
CCGCCTGATTCTCATCGAGTCTCGTATCCACCGTCTGTCTCGTTACTACA
AGTCCGTCGGTGTCCTCCCCCCCACCTGGCGTTACGAGTCCGCCACTGCT
TCCACCCTCGTTGCTTAAATGGGTCGCCTTCACTCTAAGGGAAAGGGCAT
TTCGTCCTCCGCTCTCCCCTACTCTCGCACTCCCCCGAGCTGGTTCAAGG
CTTCCACCGAGCAGGTTGTTGAGCAGATCTGCAAGCTCGCCAAGAAGGGT
GCTACCCCCTCCCAGATCGGTGTTGTCCTCCGTGACAGCCACGGTGTTGC
CCAGGTCAAGACTGTCACTGGTAACAAGATCCTCCGTATCTTGAAGTCCA
ACGGCCTTGCCCCCGAGCTCCCCGAGGACCTGTACCACCTCATCAAGAAG
GCCGTCGCCGTCCGCAAGCACCTTGAGCGTAACCGCAAGGACAAGGACAG
CAAGTTCCGCCTGATTCTCATCGAGTCTCGTATCCACCGTCTGTCTCGTT
ACTACAAGTCCGTCGGTGTCCTCCCCCCCACCTGGCGTTACGAGTCCGCC
ACTGCTTCCACCCTCGTTGCTTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS13ATCC10864_007064Aspergillus niger ATCC 10864gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_007064-T1.exon1ATCC10864_007064-T1.exon1Aspergillus niger ATCC 10864exon
ATCC10864_007064-T1.exon2ATCC10864_007064-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_007064-T1.exon3ATCC10864_007064-T1.exon3Aspergillus niger ATCC 10864exon
ATCC10864_007064-T1.exon4ATCC10864_007064-T1.exon4Aspergillus niger ATCC 10864exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_007064-T1.cdsATCC10864_007064-T1.cdsAspergillus niger ATCC 10864CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_007064-T1ATCC10864_007064-T1-proteinAspergillus niger ATCC 10864polypeptide


Cross References
External references for this mRNA
DatabaseAccession
PFAMPF08069
InterProIPR023029
InterProIPR000589
InterProIPR012606
InterProIPR009068
PFAMPF00312
Properties
Property NameValue
NoteBUSCO:EOG0926514P
Productribosomal 40S subunit protein S13
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000170supercontigMCQH01000170:651282..652364 +
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