You are here

Home

ATCC10864_007209-T1, ATCC10864_007209-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_007209-T1
Unique NameATCC10864_007209-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000172:404264..404756-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_007209-T1 ID=ATCC10864_007209-T1|Name=ATCC10864_007209-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=493bp|location=Sequence derived from alignment at MCQH01000172:404264..404756- (Aspergillus niger ATCC 10864)
ATGCTCTTCTTCAGGTAAGAAAGCGCGCGAGATCCTCAAACAAGCACCAA
AGCGACCACAGCTAACTCCCTCTCCCTACGGGGATGACTATTTGGTAGCT
TCTTCAAGACCTTAACCAACCAAACGGTGACCATCGAACTCAAGAACGAC
ATTCGCATCCGCGGCACCCTCAAATCCGTCGACCAGTACCTGAACATTAA
GCTGGACGATGTGGACGTCTTGGATCTGGATAAATACCCGCATTTGTCGT
CCGTAAAGAACATGTTTATTCGTGGTAGTGTGGTGCGGTATGTTATGCTG
CCGAGATCGGAGGTGGATATTGGGCTTTTGGAGGATGCGACGAGGAGAGG
TATGTTTCCTCATCCCTGTCCCCTTGATCTATTTGAAGGAACATGCTTAG
ATGTTTCTGTATGTGTGTGTTTGGTTGTATGGGTTGCTAATGATTCGTTT
GGTATATATAGAAGCTGCGAACCAGGCTGGGAAAGCTCGGTGA
back to top

Coding sequence (CDS) from alignment at MCQH01000172:404264..404756-

>ATCC10864_007209-T1 ID=ATCC10864_007209-T1|Name=ATCC10864_007209-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=891bp|location=Sequence derived from alignment at MCQH01000172:404264..404756- (Aspergillus niger ATCC 10864)
AAGCTGCGAACCAGGCTGGGAAAGCTCGGTGACTTCTTCAAGACCTTAAC
CAACCAAACGGTGACCATCGAACTCAAGAACGACATTCGCATCCGCGGCA
CCCTCAAATCCGTCGACCAGTACCTGAACATTAAGCTGGACGATGTGGAC
GTCTTGGATCTGGATAAATACCCGCATTTGTCGTCCGTAAAGAACATGTT
TATTCGTGGTAGTGTGGTGCGGTATGTTATGCTGCCGAGATCGGAGGTGG
ATATTGGGCTTTTGGAGGATGCGACGAGGAGAGATGCTCTTCTTCAGAAG
CTGCGAACCAGGCTGGGAAAGCTCGGTGACTTCTTCAAGACCTTAACCAA
CCAAACGGTGACCATCGAACTCAAGAACGACATTCGCATCCGCGGCACCC
TCAAATCCGTCGACCAGTACCTGAACATTAAGCTGGACGATGTGGACGTC
TTGGATCTGGATAAATACCCGCATTTGTCGTCCGTAAAGAACATGTTTAT
TCGTGGTAGTGTGGTGCGGTATGTTATGCTGCCGAGATCGGAGGTGGATA
TTGGGCTTTTGGAGGATGCGACGAGGAGAGATGCTCTTCTTCAGAAGCTG
CGAACCAGGCTGGGAAAGCTCGGTGACTTCTTCAAGACCTTAACCAACCA
AACGGTGACCATCGAACTCAAGAACGACATTCGCATCCGCGGCACCCTCA
AATCCGTCGACCAGTACCTGAACATTAAGCTGGACGATGTGGACGTCTTG
GATCTGGATAAATACCCGCATTTGTCGTCCGTAAAGAACATGTTTATTCG
TGGTAGTGTGGTGCGGTATGTTATGCTGCCGAGATCGGAGGTGGATATTG
GGCTTTTGGAGGATGCGACGAGGAGAGATGCTCTTCTTCAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006397mRNA processing
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
LSM2ATCC10864_007209Aspergillus niger ATCC 10864gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_007209-T1ATCC10864_007209-T1-proteinAspergillus niger ATCC 10864polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_007209-T1.cdsATCC10864_007209-T1.cdsAspergillus niger ATCC 10864CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_007209-T1.exon3ATCC10864_007209-T1.exon3Aspergillus niger ATCC 10864exon
ATCC10864_007209-T1.exon2ATCC10864_007209-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_007209-T1.exon1ATCC10864_007209-T1.exon1Aspergillus niger ATCC 10864exon


Cross References
External references for this mRNA
DatabaseAccession
PFAMPF01423
InterProIPR001163
InterProIPR016654
InterProIPR010920
Properties
Property NameValue
ProductU6 snRNA-associated Sm-like protein LSm2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000172supercontigMCQH01000172:404264..404756 -
Powered by Drupal