You are here

Home

ATCC10864_010146-T1, ATCC10864_010146-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_010146-T1
Unique NameATCC10864_010146-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000231:697079..697824+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_010146-T1 ID=ATCC10864_010146-T1|Name=ATCC10864_010146-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=746bp|location=Sequence derived from alignment at MCQH01000231:697079..697824+ (Aspergillus niger ATCC 10864)
ATGAGCACCCTCGTTCACAACACCGTCGAACGCCTGGACCGGCCGAGTGC
CTACTATCTGGGCAAGGTAAGCTTCATCTCTACGACTAGCGGACCATGAC
AATACTAATTCATTAATCCTCTCCAGAACAAGCGTCGCAAGTTCAGCCAT
GATGAGGGCGAGAAGCCCGAAGATCCCACCGACAACCTCAAGGATGCCAC
CACTCTCTACGTTGGCAATCTGTATGTTACAGAGTATCTCCGTTGTCAAG
TCCTTGCTAACAACACAGTTCTTTCTACACCACCGAAGAGCAGATCCATG
AGCTATTTGCCAAGTGAGCGGAAACCACCACCGAATGCGCTATTGACGAG
TACCGAGCTGATGGAATACAGGTGCGGCGAGATTAAGCGGCTAGTTATGG
GTCTTGATCGGTACAACAAGACCCCTTGCGGATTTTGCTTCGTCGAGTAT
TACACCCACCAGGATGCGCTGGACTGTCTGAAATACATTGGTGGCACAAA
GCTGGACGAGAGAATCATCCGCACGGATCTGGATCCTGGCTTTGAGGAGG
GTCGGCAATACGGGTATGTATATGATCGGGATTCTCGAACGCGCAGGCTG
CTGACGTTGGTAGACGTGGTAAATCGGGTGGTCAGGTCCGCGATGAGTAC
CGGGAGGAATACGATCCTGGTCGCGGTGGCTATGGACGTGCCTATGCGGA
TGACCAGCGACGACGGGAGGAAGAGGAGTATGGTAAGGGTAAGTAA
back to top

Coding sequence (CDS) from alignment at MCQH01000231:697079..697824+

>ATCC10864_010146-T1 ID=ATCC10864_010146-T1|Name=ATCC10864_010146-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=2655bp|location=Sequence derived from alignment at MCQH01000231:697079..697824+ (Aspergillus niger ATCC 10864)
ATGAGCACCCTCGTTCACAACACCGTCGAACGCCTGGACCGGCCGAGTGC
CTACTATCTGGGCAAGAACAAGCGTCGCAAGTTCAGCCATGATGAGGGCG
AGAAGCCCGAAGATCCCACCGACAACCTCAAGGATGCCACCACTCTCTAC
GTTGGCAATCTTTCTTTCTACACCACCGAAGAGCAGATCCATGAGCTATT
TGCCAAGTGCGGCGAGATTAAGCGGCTAGTTATGGGTCTTGATCGGTACA
ACAAGACCCCTTGCGGATTTTGCTTCGTCGAGTATTACACCCACCAGGAT
GCGCTGGACTGTCTGAAATACATTGGTGGCACAAAGCTGGACGAGAGAAT
CATCCGCACGGATCTGGATCCTGGCTTTGAGGAGGGTCGGCAATACGGAC
GTGGTAAATCGGGTGGTCAGGTCCGCGATGAGTACCGGGAGGAATACGAT
CCTGGTCGCGGTGGCTATGGACGTGCCTATGCGGATGACCAGCGACGACG
GGAGGAAGAGGAGTATGGTAAGGGTAAGTAAATGAGCACCCTCGTTCACA
ACACCGTCGAACGCCTGGACCGGCCGAGTGCCTACTATCTGGGCAAGAAC
AAGCGTCGCAAGTTCAGCCATGATGAGGGCGAGAAGCCCGAAGATCCCAC
CGACAACCTCAAGGATGCCACCACTCTCTACGTTGGCAATCTTTCTTTCT
ACACCACCGAAGAGCAGATCCATGAGCTATTTGCCAAGTGCGGCGAGATT
AAGCGGCTAGTTATGGGTCTTGATCGGTACAACAAGACCCCTTGCGGATT
TTGCTTCGTCGAGTATTACACCCACCAGGATGCGCTGGACTGTCTGAAAT
ACATTGGTGGCACAAAGCTGGACGAGAGAATCATCCGCACGGATCTGGAT
CCTGGCTTTGAGGAGGGTCGGCAATACGGACGTGGTAAATCGGGTGGTCA
GGTCCGCGATGAGTACCGGGAGGAATACGATCCTGGTCGCGGTGGCTATG
GACGTGCCTATGCGGATGACCAGCGACGACGGGAGGAAGAGGAGTATGGT
AAGGGTAAGTAAATGAGCACCCTCGTTCACAACACCGTCGAACGCCTGGA
CCGGCCGAGTGCCTACTATCTGGGCAAGAACAAGCGTCGCAAGTTCAGCC
ATGATGAGGGCGAGAAGCCCGAAGATCCCACCGACAACCTCAAGGATGCC
ACCACTCTCTACGTTGGCAATCTTTCTTTCTACACCACCGAAGAGCAGAT
CCATGAGCTATTTGCCAAGTGCGGCGAGATTAAGCGGCTAGTTATGGGTC
TTGATCGGTACAACAAGACCCCTTGCGGATTTTGCTTCGTCGAGTATTAC
ACCCACCAGGATGCGCTGGACTGTCTGAAATACATTGGTGGCACAAAGCT
GGACGAGAGAATCATCCGCACGGATCTGGATCCTGGCTTTGAGGAGGGTC
GGCAATACGGACGTGGTAAATCGGGTGGTCAGGTCCGCGATGAGTACCGG
GAGGAATACGATCCTGGTCGCGGTGGCTATGGACGTGCCTATGCGGATGA
CCAGCGACGACGGGAGGAAGAGGAGTATGGTAAGGGTAAGTAAATGAGCA
CCCTCGTTCACAACACCGTCGAACGCCTGGACCGGCCGAGTGCCTACTAT
CTGGGCAAGAACAAGCGTCGCAAGTTCAGCCATGATGAGGGCGAGAAGCC
CGAAGATCCCACCGACAACCTCAAGGATGCCACCACTCTCTACGTTGGCA
ATCTTTCTTTCTACACCACCGAAGAGCAGATCCATGAGCTATTTGCCAAG
TGCGGCGAGATTAAGCGGCTAGTTATGGGTCTTGATCGGTACAACAAGAC
CCCTTGCGGATTTTGCTTCGTCGAGTATTACACCCACCAGGATGCGCTGG
ACTGTCTGAAATACATTGGTGGCACAAAGCTGGACGAGAGAATCATCCGC
ACGGATCTGGATCCTGGCTTTGAGGAGGGTCGGCAATACGGACGTGGTAA
ATCGGGTGGTCAGGTCCGCGATGAGTACCGGGAGGAATACGATCCTGGTC
GCGGTGGCTATGGACGTGCCTATGCGGATGACCAGCGACGACGGGAGGAA
GAGGAGTATGGTAAGGGTAAGTAAATGAGCACCCTCGTTCACAACACCGT
CGAACGCCTGGACCGGCCGAGTGCCTACTATCTGGGCAAGAACAAGCGTC
GCAAGTTCAGCCATGATGAGGGCGAGAAGCCCGAAGATCCCACCGACAAC
CTCAAGGATGCCACCACTCTCTACGTTGGCAATCTTTCTTTCTACACCAC
CGAAGAGCAGATCCATGAGCTATTTGCCAAGTGCGGCGAGATTAAGCGGC
TAGTTATGGGTCTTGATCGGTACAACAAGACCCCTTGCGGATTTTGCTTC
GTCGAGTATTACACCCACCAGGATGCGCTGGACTGTCTGAAATACATTGG
TGGCACAAAGCTGGACGAGAGAATCATCCGCACGGATCTGGATCCTGGCT
TTGAGGAGGGTCGGCAATACGGACGTGGTAAATCGGGTGGTCAGGTCCGC
GATGAGTACCGGGAGGAATACGATCCTGGTCGCGGTGGCTATGGACGTGC
CTATGCGGATGACCAGCGACGACGGGAGGAAGAGGAGTATGGTAAGGGTA
AGTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0045292mRNA cis splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0005846nuclear cap binding complex
Vocabulary: Molecular Function
TermDefinition
GO:0000339RNA cap binding
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBP20ATCC10864_010146Aspergillus niger ATCC 10864gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_010146-T1ATCC10864_010146-T1-proteinAspergillus niger ATCC 10864polypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_010146-T1.exon1ATCC10864_010146-T1.exon1Aspergillus niger ATCC 10864exon
ATCC10864_010146-T1.exon2ATCC10864_010146-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_010146-T1.exon3ATCC10864_010146-T1.exon3Aspergillus niger ATCC 10864exon
ATCC10864_010146-T1.exon4ATCC10864_010146-T1.exon4Aspergillus niger ATCC 10864exon
ATCC10864_010146-T1.exon5ATCC10864_010146-T1.exon5Aspergillus niger ATCC 10864exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_010146-T1.cdsATCC10864_010146-T1.cdsAspergillus niger ATCC 10864CDS


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR012677
InterProIPR027157
PFAMPF00076
InterProIPR000504
InterProIPR034148
InterProIPR035979
Properties
Property NameValue
NoteBUSCO:EOG09264G04
ProductNuclear cap-binding protein subunit 2
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000231supercontigMCQH01000231:697079..697824 +
Powered by Drupal