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ATCC10864_010719-T1, ATCC10864_010719-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_010719-T1
Unique NameATCC10864_010719-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000245:152173..153192+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_010719-T1 ID=ATCC10864_010719-T1|Name=ATCC10864_010719-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=1020bp|location=Sequence derived from alignment at MCQH01000245:152173..153192+ (Aspergillus niger ATCC 10864)
ATGGCTGCCCTTCGCACGACCTCGCGCCTGTTCGCTTCCTCGAAGCCGCT
GTTCCGCCCAGGCGCCTTTTCTCGCTCCTATGCGACTGTTGACGCCCTTT
CCCAGGTGAGCGCAAGCGGCCACGCGAGCAGCAAGACCATTCCCGAATCT
AAGACTTCGAATGTGCAGGACCCTAGCCCCTCGGAGCAGCCCCGGGTCAA
GACTTTCCATGTCTACCGCTGGAACCCCGATCAGCCCACCGAGAAGCCCA
AGATGCAGACTTACTCCCTGGATCTGAACAAGACCGGTCCCATGATGCTC
GACGCGCTGATCCGCATCAAGAACGAGATGGACCCCACCCTGACTTTCCG
GAGAAGTTGCAGAGAGGGTATCTGTGGAAGTTGCGCGATGAACATTGACG
GTGTCAACACCCTGGCTTGCCTGTGTATGTTGTCCTGGAGTGCTTGGTGC
GATGTCCCGGCTTAGTAGCGCTAACTTTTTGCTGTATAGGCCGTATCCCC
ACCGATACCGCCAAGGAGTCTCGCATCTACCCTCTGCCTCACACCTATGT
CGTCAAGGACCTGGTTCCCGATTTGACCTACTTCTACAAGCAGTACAAGT
CGATCAAGCCTTACCTGCAGCGCGACACCCCGACCGCGGATGTAAGTGTT
GACAGCGTGTGCGAGCGATGTGGGATTTTTACTGATAAATATATAGGGTC
TCGAGAACCGCCAGAGCCCCGAGGAGCGTAAGAAGCTGGACGGTCTGTAC
GAGTGCATTCTGTGCGCTTGCTGCTCTACCTCCTGCCCCTCGTACTGGTG
GAACAGCGAGGAGTACCTTGGACCCGCTATCCTCCTCCAGTCCTACCGTT
GGTTGGCCGATTCCCGTGACGAGAAGACCGCCGAGCGTAAGGCCGCTCTC
GACAACAGCATGAGCGTGTACCGTTGCCACACCATTCTTAACTGCTCGCG
GACTTGCCCCAAGGGCCTGAACCCCGCACGGGCCATTGCGGAGATCAAGA
AGATGATGACTGCTCATTAG
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Coding sequence (CDS) from alignment at MCQH01000245:152173..153192+

>ATCC10864_010719-T1 ID=ATCC10864_010719-T1|Name=ATCC10864_010719-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=2700bp|location=Sequence derived from alignment at MCQH01000245:152173..153192+ (Aspergillus niger ATCC 10864)
ATGGCTGCCCTTCGCACGACCTCGCGCCTGTTCGCTTCCTCGAAGCCGCT
GTTCCGCCCAGGCGCCTTTTCTCGCTCCTATGCGACTGTTGACGCCCTTT
CCCAGGTGAGCGCAAGCGGCCACGCGAGCAGCAAGACCATTCCCGAATCT
AAGACTTCGAATGTGCAGGACCCTAGCCCCTCGGAGCAGCCCCGGGTCAA
GACTTTCCATGTCTACCGCTGGAACCCCGATCAGCCCACCGAGAAGCCCA
AGATGCAGACTTACTCCCTGGATCTGAACAAGACCGGTCCCATGATGCTC
GACGCGCTGATCCGCATCAAGAACGAGATGGACCCCACCCTGACTTTCCG
GAGAAGTTGCAGAGAGGGTATCTGTGGAAGTTGCGCGATGAACATTGACG
GTGTCAACACCCTGGCTTGCCTGTGCCGTATCCCCACCGATACCGCCAAG
GAGTCTCGCATCTACCCTCTGCCTCACACCTATGTCGTCAAGGACCTGGT
TCCCGATTTGACCTACTTCTACAAGCAGTACAAGTCGATCAAGCCTTACC
TGCAGCGCGACACCCCGACCGCGGATGGTCTCGAGAACCGCCAGAGCCCC
GAGGAGCGTAAGAAGCTGGACGGTCTGTACGAGTGCATTCTGTGCGCTTG
CTGCTCTACCTCCTGCCCCTCGTACTGGTGGAACAGCGAGGAGTACCTTG
GACCCGCTATCCTCCTCCAGTCCTACCGTTGGTTGGCCGATTCCCGTGAC
GAGAAGACCGCCGAGCGTAAGGCCGCTCTCGACAACAGCATGAGCGTGTA
CCGTTGCCACACCATTCTTAACTGCTCGCGGACTTGCCCCAAGGGCCTGA
ACCCCGCACGGGCCATTGCGGAGATCAAGAAGATGATGACTGCTCATTAG
ATGGCTGCCCTTCGCACGACCTCGCGCCTGTTCGCTTCCTCGAAGCCGCT
GTTCCGCCCAGGCGCCTTTTCTCGCTCCTATGCGACTGTTGACGCCCTTT
CCCAGGTGAGCGCAAGCGGCCACGCGAGCAGCAAGACCATTCCCGAATCT
AAGACTTCGAATGTGCAGGACCCTAGCCCCTCGGAGCAGCCCCGGGTCAA
GACTTTCCATGTCTACCGCTGGAACCCCGATCAGCCCACCGAGAAGCCCA
AGATGCAGACTTACTCCCTGGATCTGAACAAGACCGGTCCCATGATGCTC
GACGCGCTGATCCGCATCAAGAACGAGATGGACCCCACCCTGACTTTCCG
GAGAAGTTGCAGAGAGGGTATCTGTGGAAGTTGCGCGATGAACATTGACG
GTGTCAACACCCTGGCTTGCCTGTGCCGTATCCCCACCGATACCGCCAAG
GAGTCTCGCATCTACCCTCTGCCTCACACCTATGTCGTCAAGGACCTGGT
TCCCGATTTGACCTACTTCTACAAGCAGTACAAGTCGATCAAGCCTTACC
TGCAGCGCGACACCCCGACCGCGGATGGTCTCGAGAACCGCCAGAGCCCC
GAGGAGCGTAAGAAGCTGGACGGTCTGTACGAGTGCATTCTGTGCGCTTG
CTGCTCTACCTCCTGCCCCTCGTACTGGTGGAACAGCGAGGAGTACCTTG
GACCCGCTATCCTCCTCCAGTCCTACCGTTGGTTGGCCGATTCCCGTGAC
GAGAAGACCGCCGAGCGTAAGGCCGCTCTCGACAACAGCATGAGCGTGTA
CCGTTGCCACACCATTCTTAACTGCTCGCGGACTTGCCCCAAGGGCCTGA
ACCCCGCACGGGCCATTGCGGAGATCAAGAAGATGATGACTGCTCATTAG
ATGGCTGCCCTTCGCACGACCTCGCGCCTGTTCGCTTCCTCGAAGCCGCT
GTTCCGCCCAGGCGCCTTTTCTCGCTCCTATGCGACTGTTGACGCCCTTT
CCCAGGTGAGCGCAAGCGGCCACGCGAGCAGCAAGACCATTCCCGAATCT
AAGACTTCGAATGTGCAGGACCCTAGCCCCTCGGAGCAGCCCCGGGTCAA
GACTTTCCATGTCTACCGCTGGAACCCCGATCAGCCCACCGAGAAGCCCA
AGATGCAGACTTACTCCCTGGATCTGAACAAGACCGGTCCCATGATGCTC
GACGCGCTGATCCGCATCAAGAACGAGATGGACCCCACCCTGACTTTCCG
GAGAAGTTGCAGAGAGGGTATCTGTGGAAGTTGCGCGATGAACATTGACG
GTGTCAACACCCTGGCTTGCCTGTGCCGTATCCCCACCGATACCGCCAAG
GAGTCTCGCATCTACCCTCTGCCTCACACCTATGTCGTCAAGGACCTGGT
TCCCGATTTGACCTACTTCTACAAGCAGTACAAGTCGATCAAGCCTTACC
TGCAGCGCGACACCCCGACCGCGGATGGTCTCGAGAACCGCCAGAGCCCC
GAGGAGCGTAAGAAGCTGGACGGTCTGTACGAGTGCATTCTGTGCGCTTG
CTGCTCTACCTCCTGCCCCTCGTACTGGTGGAACAGCGAGGAGTACCTTG
GACCCGCTATCCTCCTCCAGTCCTACCGTTGGTTGGCCGATTCCCGTGAC
GAGAAGACCGCCGAGCGTAAGGCCGCTCTCGACAACAGCATGAGCGTGTA
CCGTTGCCACACCATTCTTAACTGCTCGCGGACTTGCCCCAAGGGCCTGA
ACCCCGCACGGGCCATTGCGGAGATCAAGAAGATGATGACTGCTCATTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0009055electron transfer activity
GO:0051536iron-sulfur cluster binding
GO:00515372 iron, 2 sulfur cluster binding
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0006099tricarboxylic acid cycle
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SDH2ATCC10864_010719Aspergillus niger ATCC 10864gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_010719-T1.exon1ATCC10864_010719-T1.exon1Aspergillus niger ATCC 10864exon
ATCC10864_010719-T1.exon2ATCC10864_010719-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_010719-T1.exon3ATCC10864_010719-T1.exon3Aspergillus niger ATCC 10864exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_010719-T1.cdsATCC10864_010719-T1.cdsAspergillus niger ATCC 10864CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_010719-T1ATCC10864_010719-T1-proteinAspergillus niger ATCC 10864polypeptide


Cross References
External references for this mRNA
DatabaseAccession
PFAMPF13183
InterProIPR009051
PFAMPF13534
InterProIPR017896
PFAMPF13237
InterProIPR036010
InterProIPR004489
PFAMPF13085
InterProIPR017900
InterProIPR025192
InterProIPR012675
InterProIPR001041
InterProIPR006058
Properties
Property NameValue
NoteBUSCO:EOG09263X1F
Product subunit B
Productsuccinate dehydrogenase complex
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000245supercontigMCQH01000245:152173..153192 +
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