You are here

Home

ATCC10864_011249-T1, ATCC10864_011249-T1 (mRNA) Aspergillus niger ATCC 10864

Overview
NameATCC10864_011249-T1
Unique NameATCC10864_011249-T1
TypemRNA
OrganismAspergillus niger ATCC 10864
Sequences
The following sequences are available for this feature:

mRNA from alignment at MCQH01000265:53944..54652+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>ATCC10864_011249-T1 ID=ATCC10864_011249-T1|Name=ATCC10864_011249-T1|organism=Aspergillus niger ATCC 10864|type=mRNA|length=709bp|location=Sequence derived from alignment at MCQH01000265:53944..54652+ (Aspergillus niger ATCC 10864)
ATGGCCAACTATCTCGCCTCCATCTTCGGTACAGAGCAGGACAAGGTCAA
CTGCTCCTTCTACTACAAAATCGGAGCTTGCAGACATGGCGACCGCTGCT
CTCGAAAGCACGTTAAGCCGTCATACTCTCAGACGATCCTGATGCCGAAC
ATGTACCAGAATCCCGCGTACGACCCGAAGAGCAAGATGAACCCCAGTCA
GCTACAGAACCACTTTGATGCTTTCTACGAGGATGTGTGGTGCGAGATGT
GCAAGTACGGCGAGTTGGAGGAATTGGTTGTCTGCGATAACAACAATGAC
CGTGCGTCGCATCCATTCATATCCCTTCCCCGGATAGTGGTAAGATATAG
GCTAACATAGAGTTGCTTCTTCTCTAATAGACCTCATTGGAAACGTCTAC
GCGCGCTTCAAATACGAAGAAGATGCCCAGGCCGCCTGCGACGCTTTGAA
TTCACGGTGGTACGCGGCACGACCTATATATTGTGAATTATCACCGGTTA
CAGATTTTCGAGAAGCTTGTTGTCGGTTAAATAGCGGCGAGGGGTGTGTA
CGTGGTGGATTCTGCAACTTCATTCATCGGAAGGACCCCAGCAATGAATT
GGATCGGGATCTTCGTCTCAGTACGAAGAAGTGGCTGAAGGAGCGTGGCA
GGGATGCGAGAAGTGTCAGCCGCAGTCCTAGTCCGGAGCCGACCCGGAGG
AGGTACTAG
back to top

Coding sequence (CDS) from alignment at MCQH01000265:53944..54652+

>ATCC10864_011249-T1 ID=ATCC10864_011249-T1|Name=ATCC10864_011249-T1|organism=Aspergillus niger ATCC 10864|type=CDS|length=1665bp|location=Sequence derived from alignment at MCQH01000265:53944..54652+ (Aspergillus niger ATCC 10864)
ATGGCCAACTATCTCGCCTCCATCTTCGGTACAGAGCAGGACAAGGTCAA
CTGCTCCTTCTACTACAAAATCGGAGCTTGCAGACATGGCGACCGCTGCT
CTCGAAAGCACGTTAAGCCGTCATACTCTCAGACGATCCTGATGCCGAAC
ATGTACCAGAATCCCGCGTACGACCCGAAGAGCAAGATGAACCCCAGTCA
GCTACAGAACCACTTTGATGCTTTCTACGAGGATGTGTGGTGCGAGATGT
GCAAGTACGGCGAGTTGGAGGAATTGGTTGTCTGCGATAACAACAATGAC
CACCTCATTGGAAACGTCTACGCGCGCTTCAAATACGAAGAAGATGCCCA
GGCCGCCTGCGACGCTTTGAATTCACGGTGCGGCGAGGGGTGTGTACGTG
GTGGATTCTGCAACTTCATTCATCGGAAGGACCCCAGCAATGAATTGGAT
CGGGATCTTCGTCTCAGTACGAAGAAGTGGCTGAAGGAGCGTGGCAGGGA
TGCGAGAAGTGTCAGCCGCAGTCCTAGTCCGGAGCCGACCCGGAGGAGGT
ACTAGATGGCCAACTATCTCGCCTCCATCTTCGGTACAGAGCAGGACAAG
GTCAACTGCTCCTTCTACTACAAAATCGGAGCTTGCAGACATGGCGACCG
CTGCTCTCGAAAGCACGTTAAGCCGTCATACTCTCAGACGATCCTGATGC
CGAACATGTACCAGAATCCCGCGTACGACCCGAAGAGCAAGATGAACCCC
AGTCAGCTACAGAACCACTTTGATGCTTTCTACGAGGATGTGTGGTGCGA
GATGTGCAAGTACGGCGAGTTGGAGGAATTGGTTGTCTGCGATAACAACA
ATGACCACCTCATTGGAAACGTCTACGCGCGCTTCAAATACGAAGAAGAT
GCCCAGGCCGCCTGCGACGCTTTGAATTCACGGTGCGGCGAGGGGTGTGT
ACGTGGTGGATTCTGCAACTTCATTCATCGGAAGGACCCCAGCAATGAAT
TGGATCGGGATCTTCGTCTCAGTACGAAGAAGTGGCTGAAGGAGCGTGGC
AGGGATGCGAGAAGTGTCAGCCGCAGTCCTAGTCCGGAGCCGACCCGGAG
GAGGTACTAGATGGCCAACTATCTCGCCTCCATCTTCGGTACAGAGCAGG
ACAAGGTCAACTGCTCCTTCTACTACAAAATCGGAGCTTGCAGACATGGC
GACCGCTGCTCTCGAAAGCACGTTAAGCCGTCATACTCTCAGACGATCCT
GATGCCGAACATGTACCAGAATCCCGCGTACGACCCGAAGAGCAAGATGA
ACCCCAGTCAGCTACAGAACCACTTTGATGCTTTCTACGAGGATGTGTGG
TGCGAGATGTGCAAGTACGGCGAGTTGGAGGAATTGGTTGTCTGCGATAA
CAACAATGACCACCTCATTGGAAACGTCTACGCGCGCTTCAAATACGAAG
AAGATGCCCAGGCCGCCTGCGACGCTTTGAATTCACGGTGCGGCGAGGGG
TGTGTACGTGGTGGATTCTGCAACTTCATTCATCGGAAGGACCCCAGCAA
TGAATTGGATCGGGATCTTCGTCTCAGTACGAAGAAGTGGCTGAAGGAGC
GTGGCAGGGATGCGAGAAGTGTCAGCCGCAGTCCTAGTCCGGAGCCGACC
CGGAGGAGGTACTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0046872metal ion binding
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0089701U2AF complex
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
ATCC10864_011249ATCC10864_011249Aspergillus niger ATCC 10864gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_011249-T1.exon1ATCC10864_011249-T1.exon1Aspergillus niger ATCC 10864exon
ATCC10864_011249-T1.exon2ATCC10864_011249-T1.exon2Aspergillus niger ATCC 10864exon
ATCC10864_011249-T1.exon3ATCC10864_011249-T1.exon3Aspergillus niger ATCC 10864exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_011249-T1.cdsATCC10864_011249-T1.cdsAspergillus niger ATCC 10864CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
ATCC10864_011249-T1ATCC10864_011249-T1-proteinAspergillus niger ATCC 10864polypeptide


Cross References
External references for this mRNA
DatabaseAccession
InterProIPR012677
InterProIPR000571
InterProIPR009145
PFAMPF00642
InterProIPR035979
Properties
Property NameValue
NoteantiSMASH:Cluster_1000265.1
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 10864 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
MCQH01000265supercontigMCQH01000265:53944..54652 +
Powered by Drupal