You are here

Home

M747DRAFT_176253-T1, M747DRAFT_176253-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_176253-T1
Unique NameM747DRAFT_176253-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851906.1:910812..912089+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_176253-T1 ID=M747DRAFT_176253-T1|Name=M747DRAFT_176253-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1278bp|location=Sequence derived from alignment at KZ851906.1:910812..912089+ (Aspergillus niger ATCC 13496)
TCGTGAGTCACACTGAGACAAGTCAATCCTCGCGATAAGAGAGGGGTTGT
GGAAACATGAACAACAACAATAACAACAAATACGGGCATTTTTTCCGGTC
CAGATGACCTCTTCCCCGCGCAGTAACAACTCCTACTACATCCATCCGTA
TATCTATCGACCCGCTCGCTACCTGTCAACTTCGTTGGACTTTCATCCTT
GGATATAGACCCATCCAGCCATCCAGCTAGACAAAGGAAAAATCATGGTA
CACGCCGCCGACCACCTGTCTGCCCAAGAGCTCGAGACGCTCTCCACCAA
GGCCATCGCCGCCAAGGACACCGCATACTGTAAGTCAGCCAGTCCACTGG
AGAAAAAGCCGCCGTATCTTCAGAATTAACCAATGCGACATCAATAACAC
CAACAGGCCCCTACTCAAAGTTCCGTGTTGGCGCATGCATTTTGACCGAG
TCGGGCGAATTCGTCCAGGGCGCCAATGTTGAAAATGCCTCTTATCCTGT
TGGAACTTGTGCGGAGCGAGTAGCTTTTGGAAGTGCGATTGTAAGCTATC
AACTCTACACCTCTTTTTCTTTTAATCTCTGGGTCTAGTACTTGCTGTAC
CTTGCACATGTCAGAAATCAACTGAAGAAAATCACTCATGCATTTGCTTA
CTCGTCGGACTGCTTTGCAGGTGGCCGGGCATCGCAACTTCAAGGCCATT
GCCGTTGCGACTGACATCAAACCTCCCGCTTCACCATGCGGCATGTGTAG
ACAGTTGTACGTATCGTTCTCTACCCCCTGGCCCTGGTTTTTCGATTTTT
AAGCTGTACCCGCGAATAGCTTGCAAAAAAGAAGACAAGCGACCACTCAA
TCCATCCATTAATGATTGATTGGCTACCCGGAGATTTCTATAATTCCCTC
ATCCCAATAATGCGACAACAAACCACGCACGTACCTGGCTAACAACAATG
ATTTGTGTATCTCAGTATGAGTGAATTTACCACCCCAGAGTTCCCTATCT
TTATGTATGATGGTGAGGGGAACTATACTCTTACTACAATGGGAGAGGTA
ATATATTGAGCCAATCCTTCCAACCATTCTGTTCTGAATCAGTGGCTGAC
TGATGACTTGTTCGCATCCAGCTCCTACCGAGCTCGTTCGGCCCGAGTGA
TTTCACTCATTGATCATTAAACCATGTCACTAGTCTTGATCTGCTTGATC
ACCAGTCGGTTGCCATTGTGGAGTAAAGCAGGGTGATTGGCATATGTAAG
TGGGTGGGCGATTCTTTTTTTCAGTGTC
back to top

Coding sequence (CDS) from alignment at KZ851906.1:910812..912089+

>M747DRAFT_176253-T1 ID=M747DRAFT_176253-T1|Name=M747DRAFT_176253-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=2145bp|location=Sequence derived from alignment at KZ851906.1:910812..912089+ (Aspergillus niger ATCC 13496)
ATGGTACACGCCGCCGACCACCTGTCTGCCCAAGAGCTCGAGACGCTCTC
CACCAAGGCCATCGCCGCCAAGGACACCGCATACTGCCCCTACTCAAAGT
TCCGTGTTGGCGCATGCATTTTGACCGAGTCGGGCGAATTCGTCCAGGGC
GCCAATGTTGAAAATGCCTCTTATCCTGTTGGAACTTGTGCGGAGCGAGT
AGCTTTTGGAAGTGCGATTGTGGCCGGGCATCGCAACTTCAAGGCCATTG
CCGTTGCGACTGACATCAAACCTCCCGCTTCACCATGCGGCATGTGTAGA
CAGTTTATGAGTGAATTTACCACCCCAGAGTTCCCTATCTTTATGTATGA
TGGTGAGGGGAACTATACTCTTACTACAATGGGAGAGCTCCTACCGAGCT
CGTTCGGCCCGAGTGATTTCACTCATTGAATGGTACACGCCGCCGACCAC
CTGTCTGCCCAAGAGCTCGAGACGCTCTCCACCAAGGCCATCGCCGCCAA
GGACACCGCATACTGCCCCTACTCAAAGTTCCGTGTTGGCGCATGCATTT
TGACCGAGTCGGGCGAATTCGTCCAGGGCGCCAATGTTGAAAATGCCTCT
TATCCTGTTGGAACTTGTGCGGAGCGAGTAGCTTTTGGAAGTGCGATTGT
GGCCGGGCATCGCAACTTCAAGGCCATTGCCGTTGCGACTGACATCAAAC
CTCCCGCTTCACCATGCGGCATGTGTAGACAGTTTATGAGTGAATTTACC
ACCCCAGAGTTCCCTATCTTTATGTATGATGGTGAGGGGAACTATACTCT
TACTACAATGGGAGAGCTCCTACCGAGCTCGTTCGGCCCGAGTGATTTCA
CTCATTGAATGGTACACGCCGCCGACCACCTGTCTGCCCAAGAGCTCGAG
ACGCTCTCCACCAAGGCCATCGCCGCCAAGGACACCGCATACTGCCCCTA
CTCAAAGTTCCGTGTTGGCGCATGCATTTTGACCGAGTCGGGCGAATTCG
TCCAGGGCGCCAATGTTGAAAATGCCTCTTATCCTGTTGGAACTTGTGCG
GAGCGAGTAGCTTTTGGAAGTGCGATTGTGGCCGGGCATCGCAACTTCAA
GGCCATTGCCGTTGCGACTGACATCAAACCTCCCGCTTCACCATGCGGCA
TGTGTAGACAGTTTATGAGTGAATTTACCACCCCAGAGTTCCCTATCTTT
ATGTATGATGGTGAGGGGAACTATACTCTTACTACAATGGGAGAGCTCCT
ACCGAGCTCGTTCGGCCCGAGTGATTTCACTCATTGAATGGTACACGCCG
CCGACCACCTGTCTGCCCAAGAGCTCGAGACGCTCTCCACCAAGGCCATC
GCCGCCAAGGACACCGCATACTGCCCCTACTCAAAGTTCCGTGTTGGCGC
ATGCATTTTGACCGAGTCGGGCGAATTCGTCCAGGGCGCCAATGTTGAAA
ATGCCTCTTATCCTGTTGGAACTTGTGCGGAGCGAGTAGCTTTTGGAAGT
GCGATTGTGGCCGGGCATCGCAACTTCAAGGCCATTGCCGTTGCGACTGA
CATCAAACCTCCCGCTTCACCATGCGGCATGTGTAGACAGTTTATGAGTG
AATTTACCACCCCAGAGTTCCCTATCTTTATGTATGATGGTGAGGGGAAC
TATACTCTTACTACAATGGGAGAGCTCCTACCGAGCTCGTTCGGCCCGAG
TGATTTCACTCATTGAATGGTACACGCCGCCGACCACCTGTCTGCCCAAG
AGCTCGAGACGCTCTCCACCAAGGCCATCGCCGCCAAGGACACCGCATAC
TGCCCCTACTCAAAGTTCCGTGTTGGCGCATGCATTTTGACCGAGTCGGG
CGAATTCGTCCAGGGCGCCAATGTTGAAAATGCCTCTTATCCTGTTGGAA
CTTGTGCGGAGCGAGTAGCTTTTGGAAGTGCGATTGTGGCCGGGCATCGC
AACTTCAAGGCCATTGCCGTTGCGACTGACATCAAACCTCCCGCTTCACC
ATGCGGCATGTGTAGACAGTTTATGAGTGAATTTACCACCCCAGAGTTCC
CTATCTTTATGTATGATGGTGAGGGGAACTATACTCTTACTACAATGGGA
GAGCTCCTACCGAGCTCGTTCGGCCCGAGTGATTTCACTCATTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0009972cytidine deamination
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0004126cytidine deaminase activity
GO:0008270zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
M747DRAFT_176253M747DRAFT_176253Aspergillus niger ATCC 13496gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_176253-T1M747DRAFT_176253-T1-proteinAspergillus niger ATCC 13496polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_176253-T1.utr5p1M747DRAFT_176253-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_176253-T1.exon1M747DRAFT_176253-T1.exon1Aspergillus niger ATCC 13496exon
M747DRAFT_176253-T1.exon2M747DRAFT_176253-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_176253-T1.exon3M747DRAFT_176253-T1.exon3Aspergillus niger ATCC 13496exon
M747DRAFT_176253-T1.exon4M747DRAFT_176253-T1.exon4Aspergillus niger ATCC 13496exon
M747DRAFT_176253-T1.exon5M747DRAFT_176253-T1.exon5Aspergillus niger ATCC 13496exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_176253-T1.cdsM747DRAFT_176253-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_176253-T1.utr3p1M747DRAFT_176253-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09264RJL
DBxrefInterPro:IPR016193
DBxrefInterPro:IPR006262
DBxrefInterPro:IPR002125
DBxrefPFAM:PF08211
DBxrefPFAM:PF00383
Productcytidine deaminase
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851906.1supercontigKZ851906.1:910812..912089 +
Powered by Drupal