You are here

Home

M747DRAFT_279011-T1, M747DRAFT_279011-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_279011-T1
Unique NameM747DRAFT_279011-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851912.1:263660..264798-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_279011-T1 ID=M747DRAFT_279011-T1|Name=M747DRAFT_279011-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1139bp|location=Sequence derived from alignment at KZ851912.1:263660..264798- (Aspergillus niger ATCC 13496)
GGCCAACGATGGGCTCTCGACTGTCATCTTTCCATCTCCTCTTCCATTAC
CCCCCTCTCTTTCATCTTTCCTCTAGAATAAACACACCCTGAGATACTAC
AAACATGTAAGTATGCCGCAATATATATCGATGGACACGACGCTCACTCA
TCCTCGTTCACAGGGAGGTTCTACTCGGCATCACTGGAAAGGACTTCGTC
ATTCTGGCGGCCTCCAAAGCTGCCATGAGAGGCCCCACCATCCTCAAAGC
CGAAGATGACAAGACAAAGCAGCTGAATGAACACAACCTTATGGCCTTCT
CGGGAGAGGCGGGAGACACAGGTTCGTTGCAGCTTCCCCAGTGATCGGAG
ACGCGGAACCGCCATAAACTAGATAGCTAACCCGGAGCTCAATTAGTACA
ATTCGCGGAGTACATCCAAGCCAACATCCAACTATACACGATGCGGAACG
ATACGGAGCTGGGTCCGAGTGCGGTTGCCAGCTTTGTCCGGGGAGAAATG
GCGCGGAGTCTGCGGTCTCGGAATCCCTACACTGTCAACCTCCTGCTGGG
AGGTGTCGATCCCATCACGCAGAAGCCTCATCTATACTGGATTGATTATC
TGGCATCATTGGCTCCCGTACCATATGCTGCTCACGGCTATGCGCAGTAA
GTGTGGGCGCTGAGTAACAGCGGTCTCAAGCTGTTGGGATTCATGCTAAG
GTGCTCTAGATACTACTGCCTGTCCACTCTCGATAAACACCACCACCCCG
ACATCTCGCTCGAAGAAGGAATGAAGCTCTTGGAAATGTGCACAGACGAA
TTGAAGCGCAGACTACCGATCGATTACAAGGGGGTATGTTACCAGAGTCA
TAGGCCCCGCAGTGCGAGCGAGTATGGGTAGCTGACAGCTTCTAGGTTCT
GGTGAAGATCGTGACAAAGGACGGCGTGCAAGAAGTACCATTCGATAATG
ACAGGATTGTCAAGAGTGCCTAATGTGATGTATCATACCAATGATTGTCT
TATGTTTTCGGTTTCACGGGACTTGGGTTTCAAGAGAAGATCGGGTTGCA
TGGCAGGGTATTTTCCATGACTTTGACCGAGATAAAGTCTCTTCTATTAT
TTAGCTAAAGTAGAGACAATATCAATGATTTCTCGAGAA
back to top

Coding sequence (CDS) from alignment at KZ851912.1:263660..264798-

>M747DRAFT_279011-T1 ID=M747DRAFT_279011-T1|Name=M747DRAFT_279011-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=3060bp|location=Sequence derived from alignment at KZ851912.1:263660..264798- (Aspergillus niger ATCC 13496)
GTTCTGGTGAAGATCGTGACAAAGGACGGCGTGCAAGAAGTACCATTCGA
TAATGACAGGATTGTCAAGAGTGCCTAAATACTACTGCCTGTCCACTCTC
GATAAACACCACCACCCCGACATCTCGCTCGAAGAAGGAATGAAGCTCTT
GGAAATGTGCACAGACGAATTGAAGCGCAGACTACCGATCGATTACAAGG
GGTACAATTCGCGGAGTACATCCAAGCCAACATCCAACTATACACGATGC
GGAACGATACGGAGCTGGGTCCGAGTGCGGTTGCCAGCTTTGTCCGGGGA
GAAATGGCGCGGAGTCTGCGGTCTCGGAATCCCTACACTGTCAACCTCCT
GCTGGGAGGTGTCGATCCCATCACGCAGAAGCCTCATCTATACTGGATTG
ATTATCTGGCATCATTGGCTCCCGTACCATATGCTGCTCACGGCTATGCG
CAGGAGGTTCTACTCGGCATCACTGGAAAGGACTTCGTCATTCTGGCGGC
CTCCAAAGCTGCCATGAGAGGCCCCACCATCCTCAAAGCCGAAGATGACA
AGACAAAGCAGCTGAATGAACACAACCTTATGGCCTTCTCGGGAGAGGCG
GGAGACACAGATGTTCTGGTGAAGATCGTGACAAAGGACGGCGTGCAAGA
AGTACCATTCGATAATGACAGGATTGTCAAGAGTGCCTAAATACTACTGC
CTGTCCACTCTCGATAAACACCACCACCCCGACATCTCGCTCGAAGAAGG
AATGAAGCTCTTGGAAATGTGCACAGACGAATTGAAGCGCAGACTACCGA
TCGATTACAAGGGGTACAATTCGCGGAGTACATCCAAGCCAACATCCAAC
TATACACGATGCGGAACGATACGGAGCTGGGTCCGAGTGCGGTTGCCAGC
TTTGTCCGGGGAGAAATGGCGCGGAGTCTGCGGTCTCGGAATCCCTACAC
TGTCAACCTCCTGCTGGGAGGTGTCGATCCCATCACGCAGAAGCCTCATC
TATACTGGATTGATTATCTGGCATCATTGGCTCCCGTACCATATGCTGCT
CACGGCTATGCGCAGGAGGTTCTACTCGGCATCACTGGAAAGGACTTCGT
CATTCTGGCGGCCTCCAAAGCTGCCATGAGAGGCCCCACCATCCTCAAAG
CCGAAGATGACAAGACAAAGCAGCTGAATGAACACAACCTTATGGCCTTC
TCGGGAGAGGCGGGAGACACAGATGTTCTGGTGAAGATCGTGACAAAGGA
CGGCGTGCAAGAAGTACCATTCGATAATGACAGGATTGTCAAGAGTGCCT
AAATACTACTGCCTGTCCACTCTCGATAAACACCACCACCCCGACATCTC
GCTCGAAGAAGGAATGAAGCTCTTGGAAATGTGCACAGACGAATTGAAGC
GCAGACTACCGATCGATTACAAGGGGTACAATTCGCGGAGTACATCCAAG
CCAACATCCAACTATACACGATGCGGAACGATACGGAGCTGGGTCCGAGT
GCGGTTGCCAGCTTTGTCCGGGGAGAAATGGCGCGGAGTCTGCGGTCTCG
GAATCCCTACACTGTCAACCTCCTGCTGGGAGGTGTCGATCCCATCACGC
AGAAGCCTCATCTATACTGGATTGATTATCTGGCATCATTGGCTCCCGTA
CCATATGCTGCTCACGGCTATGCGCAGGAGGTTCTACTCGGCATCACTGG
AAAGGACTTCGTCATTCTGGCGGCCTCCAAAGCTGCCATGAGAGGCCCCA
CCATCCTCAAAGCCGAAGATGACAAGACAAAGCAGCTGAATGAACACAAC
CTTATGGCCTTCTCGGGAGAGGCGGGAGACACAGATGTTCTGGTGAAGAT
CGTGACAAAGGACGGCGTGCAAGAAGTACCATTCGATAATGACAGGATTG
TCAAGAGTGCCTAAATACTACTGCCTGTCCACTCTCGATAAACACCACCA
CCCCGACATCTCGCTCGAAGAAGGAATGAAGCTCTTGGAAATGTGCACAG
ACGAATTGAAGCGCAGACTACCGATCGATTACAAGGGGTACAATTCGCGG
AGTACATCCAAGCCAACATCCAACTATACACGATGCGGAACGATACGGAG
CTGGGTCCGAGTGCGGTTGCCAGCTTTGTCCGGGGAGAAATGGCGCGGAG
TCTGCGGTCTCGGAATCCCTACACTGTCAACCTCCTGCTGGGAGGTGTCG
ATCCCATCACGCAGAAGCCTCATCTATACTGGATTGATTATCTGGCATCA
TTGGCTCCCGTACCATATGCTGCTCACGGCTATGCGCAGGAGGTTCTACT
CGGCATCACTGGAAAGGACTTCGTCATTCTGGCGGCCTCCAAAGCTGCCA
TGAGAGGCCCCACCATCCTCAAAGCCGAAGATGACAAGACAAAGCAGCTG
AATGAACACAACCTTATGGCCTTCTCGGGAGAGGCGGGAGACACAGATGT
TCTGGTGAAGATCGTGACAAAGGACGGCGTGCAAGAAGTACCATTCGATA
ATGACAGGATTGTCAAGAGTGCCTAAATACTACTGCCTGTCCACTCTCGA
TAAACACCACCACCCCGACATCTCGCTCGAAGAAGGAATGAAGCTCTTGG
AAATGTGCACAGACGAATTGAAGCGCAGACTACCGATCGATTACAAGGGG
TACAATTCGCGGAGTACATCCAAGCCAACATCCAACTATACACGATGCGG
AACGATACGGAGCTGGGTCCGAGTGCGGTTGCCAGCTTTGTCCGGGGAGA
AATGGCGCGGAGTCTGCGGTCTCGGAATCCCTACACTGTCAACCTCCTGC
TGGGAGGTGTCGATCCCATCACGCAGAAGCCTCATCTATACTGGATTGAT
TATCTGGCATCATTGGCTCCCGTACCATATGCTGCTCACGGCTATGCGCA
GGAGGTTCTACTCGGCATCACTGGAAAGGACTTCGTCATTCTGGCGGCCT
CCAAAGCTGCCATGAGAGGCCCCACCATCCTCAAAGCCGAAGATGACAAG
ACAAAGCAGCTGAATGAACACAACCTTATGGCCTTCTCGGGAGAGGCGGG
AGACACAGAT
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005839proteasome core complex
Vocabulary: Molecular Function
TermDefinition
GO:0004175endopeptidase activity
GO:0004298threonine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0051603proteolysis involved in cellular protein catabolic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PCB4M747DRAFT_279011Aspergillus niger ATCC 13496gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_279011-T1M747DRAFT_279011-T1-proteinAspergillus niger ATCC 13496polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_279011-T1.cdsM747DRAFT_279011-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_279011-T1.utr3p1M747DRAFT_279011-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_279011-T1.exon5M747DRAFT_279011-T1.exon5Aspergillus niger ATCC 13496exon
M747DRAFT_279011-T1.exon4M747DRAFT_279011-T1.exon4Aspergillus niger ATCC 13496exon
M747DRAFT_279011-T1.exon3M747DRAFT_279011-T1.exon3Aspergillus niger ATCC 13496exon
M747DRAFT_279011-T1.exon2M747DRAFT_279011-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_279011-T1.exon1M747DRAFT_279011-T1.exon1Aspergillus niger ATCC 13496exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_279011-T1.utr5p1M747DRAFT_279011-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09263WSS
NoteMEROPS:MER0002676
DBxrefInterPro:IPR035206
DBxrefInterPro:IPR023333
DBxrefInterPro:IPR016050
DBxrefInterPro:IPR029055
DBxrefInterPro:IPR001353
DBxrefPFAM:PF00227
ProductProbable proteasome subunit beta type-4
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851912.1supercontigKZ851912.1:263660..264798 -
Powered by Drupal