You are here

Home

M747DRAFT_283911-T1, M747DRAFT_283911-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_283911-T1
Unique NameM747DRAFT_283911-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851926.1:198798..200065-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_283911-T1 ID=M747DRAFT_283911-T1|Name=M747DRAFT_283911-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1268bp|location=Sequence derived from alignment at KZ851926.1:198798..200065- (Aspergillus niger ATCC 13496)
AAGCAGCCAAACCGCGTAGAGGACAGCCAGCGCAAAACATCTAACGAATC
GCAATTATTCCTCACAATCAAACAAAGTCATTTTACTATATCATCACCAT
ATAACCAAAACAACTGCTCCCATTTTACCCGGGGCGATGTAGTTCCCTAA
TTACTATGTCGCGGCTTACTCCGTTATTTTGATGCCCCACCAAAAACCCC
GCCGAAGCTTTCCGTCACCAGCTGAGCCCAGTCAACAACCACCTCCATCA
TCGTCGTTCTCTTCACTACTATATTAGAGCGTCTTGTTCCTTGGAATTCT
CGTCCTTATTATTTCCTCTCCTATAGCAACTTACTCTACGAATACCTTAC
AGTCGCTATCTATCTTACCTCAAAATGTTGATCAAGTGAGTTGTTGTCCG
CCCATGACGCACGCAGATACCCTCTGTCGCGATAGCAAAGCTAATCGGCG
TCAACCTCCAGAGTCCGTACCCTTACTGGCAAGGAGATCGAGTTGGACAT
CGAGCCGGATTACAAGGTACATACACACATCTACACATCCACAGACATAT
ATATGTCTTTGCAATCTCGCCCCATCCGCGTGTGGTGATTGTTAGCTGGT
CTTACTAGCCGGCTGCAACAACTCCGCTCGCACACGACCAGCCACCCACC
CCACGGACCTATGATACTTTCTTCCGCGCAGTCGCTAACAAGTACATATG
CAGGTGTCCCGGATAAAGGAGCGTGTTGAAGAGAAAGAGGGTATTCCTCC
TGTTCAGCAGCGATTGATTTTCGGTGGAAAGCAGATGTACGCATACACCC
GTTTCCCTATTCCTACACTTGGGGATGTATAATCGCTATGCTTTGGGCCA
AATACTGATAAAGGGACTTTCGTGAATATAGGGCCGACGACAAGACTGCA
TCGGAATATAACCTGGAAGGTGGTGCCACGCTACACCTTGTTCTTGCTCT
GCGTGGTGGATGCTTGTGAATGTGTGTGGTATGACAGAAGGGGGAATAAA
GAGGAAGATATCTGTATGTTGCTTTCAAGGCCGGTATTCTGAACGCTATG
TAGCGTTGGTTTTTGTTTCGAGGCTATGGGCATGCATGTAGGTTTTGATC
CTGGGGCGGAGGGTTTTAATGAGCTACAAACCAACAATGCAGTAATGACA
GTTTTCTACATATTTTCACTGAAGATGGAATCCCTCGTGCAGTCGCGGAA
TGGGAATTGTCATGTGTGACTGGTTTCTCATATAAAATAAGACCGACCGT
GCAGCCTGTGTATGTAAT
back to top

Coding sequence (CDS) from alignment at KZ851926.1:198798..200065-

>M747DRAFT_283911-T1 ID=M747DRAFT_283911-T1|Name=M747DRAFT_283911-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=948bp|location=Sequence derived from alignment at KZ851926.1:198798..200065- (Aspergillus niger ATCC 13496)
GGCCGACGACAAGACTGCATCGGAATATAACCTGGAAGGTGGTGCCACGC
TACACCTTGTTCTTGCTCTGCGTGGTGGATGCTTGTGAGTGTCCCGGATA
AAGGAGCGTGTTGAAGAGAAAGAGGGTATTCCTCCTGTTCAGCAGCGATT
GATTTTCGGTGGAAAGCAGATAGTCCGTACCCTTACTGGCAAGGAGATCG
AGTTGGACATCGAGCCGGATTACAAGATGTTGATCAAGGCCGACGACAAG
ACTGCATCGGAATATAACCTGGAAGGTGGTGCCACGCTACACCTTGTTCT
TGCTCTGCGTGGTGGATGCTTGTGAGTGTCCCGGATAAAGGAGCGTGTTG
AAGAGAAAGAGGGTATTCCTCCTGTTCAGCAGCGATTGATTTTCGGTGGA
AAGCAGATAGTCCGTACCCTTACTGGCAAGGAGATCGAGTTGGACATCGA
GCCGGATTACAAGATGTTGATCAAGGCCGACGACAAGACTGCATCGGAAT
ATAACCTGGAAGGTGGTGCCACGCTACACCTTGTTCTTGCTCTGCGTGGT
GGATGCTTGTGAGTGTCCCGGATAAAGGAGCGTGTTGAAGAGAAAGAGGG
TATTCCTCCTGTTCAGCAGCGATTGATTTTCGGTGGAAAGCAGATAGTCC
GTACCCTTACTGGCAAGGAGATCGAGTTGGACATCGAGCCGGATTACAAG
ATGTTGATCAAGGCCGACGACAAGACTGCATCGGAATATAACCTGGAAGG
TGGTGCCACGCTACACCTTGTTCTTGCTCTGCGTGGTGGATGCTTGTGAG
TGTCCCGGATAAAGGAGCGTGTTGAAGAGAAAGAGGGTATTCCTCCTGTT
CAGCAGCGATTGATTTTCGGTGGAAAGCAGATAGTCCGTACCCTTACTGG
CAAGGAGATCGAGTTGGACATCGAGCCGGATTACAAGATGTTGATCAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NEDD8M747DRAFT_283911Aspergillus niger ATCC 13496gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_283911-T1M747DRAFT_283911-T1-proteinAspergillus niger ATCC 13496polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_283911-T1.cdsM747DRAFT_283911-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_283911-T1.utr3p1M747DRAFT_283911-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_283911-T1.exon4M747DRAFT_283911-T1.exon4Aspergillus niger ATCC 13496exon
M747DRAFT_283911-T1.exon3M747DRAFT_283911-T1.exon3Aspergillus niger ATCC 13496exon
M747DRAFT_283911-T1.exon2M747DRAFT_283911-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_283911-T1.exon1M747DRAFT_283911-T1.exon1Aspergillus niger ATCC 13496exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_283911-T1.utr5p1M747DRAFT_283911-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR029071
DBxrefInterPro:IPR038738
DBxrefInterPro:IPR019954
DBxrefInterPro:IPR000626
DBxrefInterPro:IPR019956
DBxrefPFAM:PF00240
DBxrefPFAM:PF11976
Productnedd8-conjugating enzyme UBE2F
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851926.1supercontigKZ851926.1:198798..200065 -
Powered by Drupal