M747DRAFT_288008-T1, M747DRAFT_288008-T1 (mRNA) Aspergillus niger ATCC 13496

Overview


Name	M747DRAFT_288008-T1
Unique Name	M747DRAFT_288008-T1
Type	mRNA
Organism	Aspergillus niger ATCC 13496

Sequences

The following sequences are available for this feature:

mRNA from alignment at KZ851945.1:169211..172118-
coding sequence from alignment at KZ851945.1:169211..172118-

mRNA from alignment at KZ851945.1:169211..172118-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>M747DRAFT_288008-T1 ID=M747DRAFT_288008-T1|Name=M747DRAFT_288008-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=2908bp|location=Sequence derived from alignment at KZ851945.1:169211..172118- (Aspergillus niger ATCC 13496)
ATTCCTTCTCTCTCTCTTTATCTTTGTCGCGCTCTCACCAGCTTCTGTAC
CTCACTGCTTCAGCTGGTCGGTTCGGTCTACGCCCTGGAGCTATCGAGCT
GCCGTATTTCCTCACGCTCGTCCAGGCGCCGGTAGCCTTTCGGAGCACCC
GCGTACTTTCTTTCACCGTCCCGCATCCTCTTCACCACATTAGACGATCC
CCTTCGACTCCGGTCGAATAGGGAGAAAGCCACATACATACATAATGCCA
ATCAAACGCAAAGCTACGGATAGCGGTCGGTCAAGTAGAGCGTCGAAACG
GCCCACACCTGTGCCGGATATCGGTAGTAGTGATGAATACTCAGACTACG
AGGAAGAAGTCAAGGATGATAACCTGAAAGGTAGCGTAGAAGTGGAGTCT
CGTTCATATGGGGTCTGCTTGCTGACATCTTCTGCTTGCAAGGTGTCTTG
GAGAAATTCTCTCTCGAATCTTTTAGCAACAAGAAGAGCGCCGCCGTACA
GAGACAGGACCCCGATTTCGGTTACAAGGACTTTTCCTCGCTATCGTTGA
AACCCGATCATGCGAACCGCCCGCTCTGGATCGATCCTCTTAAGGGAACT
ATTACCTTGGAGAGTTTCTCCCCTCTGGCACCCCAGGCGCAGGACTTCCT
GACTACTATCGCCGAACCGCTGTCGCGTCCGACCCATCTGCACGAATACC
GATTGACAGGGAACAGTTTGTATGCGGCTGTCTCGGTGGGTTTGCTGCCC
CAGGATATCATCAACTTTCTAGATCGATTGTCGAAAACGCCGCTTCCGGA
TACCATCAAGTCGTTCATTCTCGACTTCACGAAATCATACGGAAAGATCA
AGGTCGTGCTGAAACATAATCGCTTCTTCGTGGAAAGTACCGATCCGGCG
ATGTTGCAGATGCTGCTGCAGGATGAAGTTATTGGTTCTCAGCGATTGAA
AGGCACGGAGGGCATTATTCAGCAGGCAGCCCCGAAAATGGGCGGCCTGG
TCATTCCGGGTACAAAGGATGCAGCGGGTGTCAGGCAGGCTTCGGAGCAG
AAGCCGGCGGAAGACGGTGCAGGCGAGGCTCGTAAAGAGGACGATATTCT
GCTGGCTATTCGCGACGACGATGACGACGAGGAGGAAGTTCAAGTGCACA
GTTTCGAAATTCCCAACGAAGCAGTCGAACCCGTCAAGGCGCGCTGTCAG
GCTATGGGCTGTCCAGCATTGGAGGAGTATGATTTCCGAAATGATGAGAT
CAATCCCACCTTGGATATCGACTTGAAGCCGGCAGCACGAATTCGAAGCT
ACCAAGAAAAGAGTTTGAGTAAGATGTTCGGTAACGGACGTGCGAAGAGT
GGAATTATCGTCTTGCCTTGTGGTGCCGGAAAAACGTTGGTGGGTATTAC
GGCGGGCTGCACGATCAAGAAGGGGACAATTGTCTTGTGTACCAGTTCAA
TGTCTGTGGTGCAATGGCGTAACGAGTTCTTGCGCTGGTCCAATATTGAT
CCCGGTGATATTGCGGTTTTCACCTCAGATAACAAGGAGAAATTCCGTCG
ATCGACTGGTATCATCGTGTCAACCTACTCCATGGTGTCCCAGACGCGTG
CTCGGTCGCATGATGCGCAGAAGATGATGGATTGGATTCAGTCACGAGAG
TGGGGTCTGATGATTCTTGACGAGGTGCACGTCGTGCCTGCATCGATGTT
CCGAAAGGTCACATCGGCAATCGCATGTCAGAGTAAATTGGGATTGACGG
CAACGCTGCTGCGAGAGGATGACAAGATCAAGGATCTGAACTTCCTGATT
GGTCCCAAGTTGTACGAAGCCAACTGGATGGAACTGGCCGAGCAAGGGCA
CATTGCCAAGGTTCAGTGCGCCGAGGTATGGTGTCCGATGACGACCGAAT
TCTACTCGGAGTACATGAGAGAAAAGTCACGAAAGGCTGCTCTTCTATAC
ATTATGAACCCTCGGAAATTCCAAGCATGCCAGTTCCTGATCGACTACCA
CGAGAAGCGAGGTGACAAGGTCATTGTCTTTTCCGACAACGTTTACGCTC
TTCAGCGGTATGCACTCAAGCTGAACAAGGCCTATATCTACGGCGGTACT
CCACAGAACGAGCGCATGCGCATTTTGGAGAATTTCCAGCACAATGAACA
AGTCAATACCATCTTCCTCTCCAAGATCGGAGACACGTCGCTCGATCTGC
CGGAAGCCACCTGTCTGATCCAGATCTCGTCGCATTACGGTTCCCGTCGT
CAGGAAGCCCAACGACTTGGTCGGATTCTGCGAGCCAAGCGTCGAAACGA
CGAGGGATTCAACGCCTTCTTCTACTCGCTTGTGTCGAAAGACACAGATG
AAATGTTCTACTCTTCCAAGCGACAGGCTTTCCTTGTCGACCAGGGCTAC
GCGTTCAAGGTCATTACTCACCTGCAAGGCATCGAGAACCTGGAAGGGTT
GGCGTACGCCACGCCCAGCGAACGCCGTGAGCTGCTGCAGGAGGTGATGT
TACAGAACGAGACTTCTGCCGAGGTAGAGCACGTCACGGACGATCTCTTC
TCAGGACGTTCGGGCGGCCAGCGAAAGGGAGCAGTCAAGCGCAGTGCCGC
GACACTCAGCGGCCTGGCCGGCGGTGAAGACATGGCGTATATCGAGTACA
ACAAGAGCCGGAACAAGCAGCTGAAGGACAAGGTGGGCCATCACCCGCTG
TTCCGGAAGCTGGAGCGGGAACGACTCAAGCGGAAGAAGGAGTTGGAGGA
TTTCATGCGGTAGTTGTGAAGCTAATACCCAGACCGACACTACCTACTAT
ACTATACGACATACCCTGTTAGATTGGACATGCATTAGTGAAAAGTAATT
TCACATACGAATGGAACCTAATTGTGCATTCTTGAATAGAGTCACCGGGA
CATGAAGC

Coding sequence (CDS) from alignment at KZ851945.1:169211..172118-

>M747DRAFT_288008-T1 ID=M747DRAFT_288008-T1|Name=M747DRAFT_288008-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=4914bp|location=Sequence derived from alignment at KZ851945.1:169211..172118- (Aspergillus niger ATCC 13496)
GTGTCTTGGAGAAATTCTCTCTCGAATCTTTTAGCAACAAGAAGAGCGCC
GCCGTACAGAGACAGGACCCCGATTTCGGTTACAAGGACTTTTCCTCGCT
ATCGTTGAAACCCGATCATGCGAACCGCCCGCTCTGGATCGATCCTCTTA
AGGGAACTATTACCTTGGAGAGTTTCTCCCCTCTGGCACCCCAGGCGCAG
GACTTCCTGACTACTATCGCCGAACCGCTGTCGCGTCCGACCCATCTGCA
CGAATACCGATTGACAGGGAACAGTTTGTATGCGGCTGTCTCGGTGGGTT
TGCTGCCCCAGGATATCATCAACTTTCTAGATCGATTGTCGAAAACGCCG
CTTCCGGATACCATCAAGTCGTTCATTCTCGACTTCACGAAATCATACGG
AAAGATCAAGGTCGTGCTGAAACATAATCGCTTCTTCGTGGAAAGTACCG
ATCCGGCGATGTTGCAGATGCTGCTGCAGGATGAAGTTATTGGTTCTCAG
CGATTGAAAGGCACGGAGGGCATTATTCAGCAGGCAGCCCCGAAAATGGG
CGGCCTGGTCATTCCGGGTACAAAGGATGCAGCGGGTGTCAGGCAGGCTT
CGGAGCAGAAGCCGGCGGAAGACGGTGCAGGCGAGGCTCGTAAAGAGGAC
GATATTCTGCTGGCTATTCGCGACGACGATGACGACGAGGAGGAAGTTCA
AGTGCACAGTTTCGAAATTCCCAACGAAGCAGTCGAACCCGTCAAGGCGC
GCTGTCAGGCTATGGGCTGTCCAGCATTGGAGGAGTATGATTTCCGAAAT
GATGAGATCAATCCCACCTTGGATATCGACTTGAAGCCGGCAGCACGAAT
TCGAAGCTACCAAGAAAAGAGTTTGAGTAAGATGTTCGGTAACGGACGTG
CGAAGAGTGGAATTATCGTCTTGCCTTGTGGTGCCGGAAAAACGTTGGTG
GGTATTACGGCGGGCTGCACGATCAAGAAGGGGACAATTGTCTTGTGTAC
CAGTTCAATGTCTGTGGTGCAATGGCGTAACGAGTTCTTGCGCTGGTCCA
ATATTGATCCCGGTGATATTGCGGTTTTCACCTCAGATAACAAGGAGAAA
TTCCGTCGATCGACTGGTATCATCGTGTCAACCTACTCCATGGTGTCCCA
GACGCGTGCTCGGTCGCATGATGCGCAGAAGATGATGGATTGGATTCAGT
CACGAGAGTGGGGTCTGATGATTCTTGACGAGGTGCACGTCGTGCCTGCA
TCGATGTTCCGAAAGGTCACATCGGCAATCGCATGTCAGAGTAAATTGGG
ATTGACGGCAACGCTGCTGCGAGAGGATGACAAGATCAAGGATCTGAACT
TCCTGATTGGTCCCAAGTTGTACGAAGCCAACTGGATGGAACTGGCCGAG
CAAGGGCACATTGCCAAGGTTCAGTGCGCCGAGGTATGGTGTCCGATGAC
GACCGAATTCTACTCGGAGTACATGAGAGAAAAGTCACGAAAGGCTGCTC
TTCTATACATTATGAACCCTCGGAAATTCCAAGCATGCCAGTTCCTGATC
GACTACCACGAGAAGCGAGGTGACAAGGTCATTGTCTTTTCCGACAACGT
TTACGCTCTTCAGCGGTATGCACTCAAGCTGAACAAGGCCTATATCTACG
GCGGTACTCCACAGAACGAGCGCATGCGCATTTTGGAGAATTTCCAGCAC
AATGAACAAGTCAATACCATCTTCCTCTCCAAGATCGGAGACACGTCGCT
CGATCTGCCGGAAGCCACCTGTCTGATCCAGATCTCGTCGCATTACGGTT
CCCGTCGTCAGGAAGCCCAACGACTTGGTCGGATTCTGCGAGCCAAGCGT
CGAAACGACGAGGGATTCAACGCCTTCTTCTACTCGCTTGTGTCGAAAGA
CACAGATGAAATGTTCTACTCTTCCAAGCGACAGGCTTTCCTTGTCGACC
AGGGCTACGCGTTCAAGGTCATTACTCACCTGCAAGGCATCGAGAACCTG
GAAGGGTTGGCGTACGCCACGCCCAGCGAACGCCGTGAGCTGCTGCAGGA
GGTGATGTTACAGAACGAGACTTCTGCCGAGGTAGAGCACGTCACGGACG
ATCTCTTCTCAGGACGTTCGGGCGGCCAGCGAAAGGGAGCAGTCAAGCGC
AGTGCCGCGACACTCAGCGGCCTGGCCGGCGGTGAAGACATGGCGTATAT
CGAGTACAACAAGAGCCGGAACAAGCAGCTGAAGGACAAGGTGGGCCATC
ACCCGCTGTTCCGGAAGCTGGAGCGGGAACGACTCAAGCGGAAGAAGGAG
TTGGAGGATTTCATGCGGTAGATGCCAATCAAACGCAAAGCTACGGATAG
CGGTCGGTCAAGTAGAGCGTCGAAACGGCCCACACCTGTGCCGGATATCG
GTAGTAGTGATGAATACTCAGACTACGAGGAAGAAGTCAAGGATGATAAC
CTGAAAGGTGTCTTGGAGAAATTCTCTCTCGAATCTTTTAGCAACAAGAA
GAGCGCCGCCGTACAGAGACAGGACCCCGATTTCGGTTACAAGGACTTTT
CCTCGCTATCGTTGAAACCCGATCATGCGAACCGCCCGCTCTGGATCGAT
CCTCTTAAGGGAACTATTACCTTGGAGAGTTTCTCCCCTCTGGCACCCCA
GGCGCAGGACTTCCTGACTACTATCGCCGAACCGCTGTCGCGTCCGACCC
ATCTGCACGAATACCGATTGACAGGGAACAGTTTGTATGCGGCTGTCTCG
GTGGGTTTGCTGCCCCAGGATATCATCAACTTTCTAGATCGATTGTCGAA
AACGCCGCTTCCGGATACCATCAAGTCGTTCATTCTCGACTTCACGAAAT
CATACGGAAAGATCAAGGTCGTGCTGAAACATAATCGCTTCTTCGTGGAA
AGTACCGATCCGGCGATGTTGCAGATGCTGCTGCAGGATGAAGTTATTGG
TTCTCAGCGATTGAAAGGCACGGAGGGCATTATTCAGCAGGCAGCCCCGA
AAATGGGCGGCCTGGTCATTCCGGGTACAAAGGATGCAGCGGGTGTCAGG
CAGGCTTCGGAGCAGAAGCCGGCGGAAGACGGTGCAGGCGAGGCTCGTAA
AGAGGACGATATTCTGCTGGCTATTCGCGACGACGATGACGACGAGGAGG
AAGTTCAAGTGCACAGTTTCGAAATTCCCAACGAAGCAGTCGAACCCGTC
AAGGCGCGCTGTCAGGCTATGGGCTGTCCAGCATTGGAGGAGTATGATTT
CCGAAATGATGAGATCAATCCCACCTTGGATATCGACTTGAAGCCGGCAG
CACGAATTCGAAGCTACCAAGAAAAGAGTTTGAGTAAGATGTTCGGTAAC
GGACGTGCGAAGAGTGGAATTATCGTCTTGCCTTGTGGTGCCGGAAAAAC
GTTGGTGGGTATTACGGCGGGCTGCACGATCAAGAAGGGGACAATTGTCT
TGTGTACCAGTTCAATGTCTGTGGTGCAATGGCGTAACGAGTTCTTGCGC
TGGTCCAATATTGATCCCGGTGATATTGCGGTTTTCACCTCAGATAACAA
GGAGAAATTCCGTCGATCGACTGGTATCATCGTGTCAACCTACTCCATGG
TGTCCCAGACGCGTGCTCGGTCGCATGATGCGCAGAAGATGATGGATTGG
ATTCAGTCACGAGAGTGGGGTCTGATGATTCTTGACGAGGTGCACGTCGT
GCCTGCATCGATGTTCCGAAAGGTCACATCGGCAATCGCATGTCAGAGTA
AATTGGGATTGACGGCAACGCTGCTGCGAGAGGATGACAAGATCAAGGAT
CTGAACTTCCTGATTGGTCCCAAGTTGTACGAAGCCAACTGGATGGAACT
GGCCGAGCAAGGGCACATTGCCAAGGTTCAGTGCGCCGAGGTATGGTGTC
CGATGACGACCGAATTCTACTCGGAGTACATGAGAGAAAAGTCACGAAAG
GCTGCTCTTCTATACATTATGAACCCTCGGAAATTCCAAGCATGCCAGTT
CCTGATCGACTACCACGAGAAGCGAGGTGACAAGGTCATTGTCTTTTCCG
ACAACGTTTACGCTCTTCAGCGGTATGCACTCAAGCTGAACAAGGCCTAT
ATCTACGGCGGTACTCCACAGAACGAGCGCATGCGCATTTTGGAGAATTT
CCAGCACAATGAACAAGTCAATACCATCTTCCTCTCCAAGATCGGAGACA
CGTCGCTCGATCTGCCGGAAGCCACCTGTCTGATCCAGATCTCGTCGCAT
TACGGTTCCCGTCGTCAGGAAGCCCAACGACTTGGTCGGATTCTGCGAGC
CAAGCGTCGAAACGACGAGGGATTCAACGCCTTCTTCTACTCGCTTGTGT
CGAAAGACACAGATGAAATGTTCTACTCTTCCAAGCGACAGGCTTTCCTT
GTCGACCAGGGCTACGCGTTCAAGGTCATTACTCACCTGCAAGGCATCGA
GAACCTGGAAGGGTTGGCGTACGCCACGCCCAGCGAACGCCGTGAGCTGC
TGCAGGAGGTGATGTTACAGAACGAGACTTCTGCCGAGGTAGAGCACGTC
ACGGACGATCTCTTCTCAGGACGTTCGGGCGGCCAGCGAAAGGGAGCAGT
CAAGCGCAGTGCCGCGACACTCAGCGGCCTGGCCGGCGGTGAAGACATGG
CGTATATCGAGTACAACAAGAGCCGGAACAAGCAGCTGAAGGACAAGGTG
GGCCATCACCCGCTGTTCCGGAAGCTGGAGCGGGAACGACTCAAGCGGAA
GAAGGAGTTGGAGGATTTCATGCGGTAGATGCCAATCAAACGCAAAGCTA
CGGATAGCGGTCGGTCAAGTAGAGCGTCGAAACGGCCCACACCTGTGCCG
GATATCGGTAGTAGTGATGAATACTCAGACTACGAGGAAGAAGTCAAGGA
TGATAACCTGAAAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0006289	nucleotide-excision repair
GO:0006367	transcription initiation from RNA polymerase II promoter

Vocabulary: **Molecular Function**
Term	Definition
GO:0003678	DNA helicase activity
GO:0003677	DNA binding
GO:0016787	hydrolase activity
GO:0005524	ATP binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
SSL2	M747DRAFT_288008	Aspergillus niger ATCC 13496	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
M747DRAFT_288008-T1	M747DRAFT_288008-T1-protein	Aspergillus niger ATCC 13496	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
M747DRAFT_288008-T1.cds	M747DRAFT_288008-T1.cds	Aspergillus niger ATCC 13496	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
M747DRAFT_288008-T1.utr3p1	M747DRAFT_288008-T1.utr3p1	Aspergillus niger ATCC 13496	three_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
M747DRAFT_288008-T1.exon2	M747DRAFT_288008-T1.exon2	Aspergillus niger ATCC 13496	exon
M747DRAFT_288008-T1.exon1	M747DRAFT_288008-T1.exon1	Aspergillus niger ATCC 13496	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
M747DRAFT_288008-T1.utr5p1	M747DRAFT_288008-T1.utr5p1	Aspergillus niger ATCC 13496	five_prime_UTR

Properties


Property Name	Value
Note	BUSCO:EOG09260HSP
DBxref	InterPro:IPR027417
DBxref	InterPro:IPR001161
DBxref	InterPro:IPR032438
DBxref	InterPro:IPR032830
DBxref	InterPro:IPR006935
DBxref	InterPro:IPR001650
DBxref	InterPro:IPR014001
DBxref	PFAM:PF04851
DBxref	PFAM:PF13625
DBxref	PFAM:PF00271
DBxref	PFAM:PF16203
Product	DNA repair helicase RAD25

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Aspergillus niger ATCC 13496 whole genome analysis	2021-10-31

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KZ851945.1	supercontig	KZ851945.1:169211..172118 -

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M747DRAFT_288008-T1, M747DRAFT_288008-T1 (mRNA) Aspergillus niger ATCC 13496

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M747DRAFT_288008-T1, M747DRAFT_288008-T1 (mRNA) Aspergillus niger ATCC 13496