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M747DRAFT_289378-T1, M747DRAFT_289378-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_289378-T1
Unique NameM747DRAFT_289378-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851954.1:120121..122044+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_289378-T1 ID=M747DRAFT_289378-T1|Name=M747DRAFT_289378-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1924bp|location=Sequence derived from alignment at KZ851954.1:120121..122044+ (Aspergillus niger ATCC 13496)
CCTAGATAGACCTTTCCATTCTAACTTTCATGACACCCGACGCACTCTTG
GGTTGACGCACTCGCTTCCTTTTAGTGCAAGCATGGTCGATTCCGATGAA
GAGTACATAGGAGAAATCTCTGAGGATGAGGATGAAAACAATCTTCTACC
AGGGTCTCGCGGAGAGACTACGTCCGCATCCCGCTCCAAGAGGAGAAAGC
ACCGTGGAGGCGCAGAATGGGAGGTCTCGAGAACATGGGAAACCTTAGTT
GAAGGTGCCGACGGTACAATCAGCTCTACAGTTGAAGGGCTTCTCGAGGC
TGGGAAAAGGAAAAGGTAGGGTGTACTTTCAAGCCGAGTTAGTCTCAGTT
TTGATAACGGTTCGAGCTGAGTTCCATGTCTTCGCGCTTGCAGGCTCCTC
AGAGATACGACTCCTTTACAACGGGGTATAATCCGTCATCTCATCTTGAT
TATAGATCTGTCACAATCTATGACCGAGAAAGATCTCCGACCGACACGTT
ACTTATTGTCCTTACGGTATGCACAAGAGTTCGTGAGGGAATTTTTCGAG
CAAAATCCCATCTCTCAACTCGGCGTTCTTGGCCTCAAAGATGGACTGGC
GGTCAGAGTCAGTGATATGAGTGGAAACCCTACTGAGCATATTAGTGCCA
TCCAATCACTGCGAGACCAGGATCCGAAAGGTCTTCCTAGTCTGCAAAAT
GGCTTCGAAATGGCTCGTGGTGCCTTGTTGTATGTCTTTTCCACGGTAGC
GTCGTACACACTCAATGATAAGGTGGACTAATTTGTCTTGCAACAGCCAT
ACTCCAAGCCATGGCACCCGTGAGATCTTCGTCATTTTTGGCTCCCTCCT
TTCCTCTGATCCCGGTGATATTCACCAAACAATTACTACGCTTATAAATG
ATAAAATACGTGTTGGAATCGTGGGCCTTGCTGCTCAAGTGGCAATCTGT
CGCGAAATTTGTGGCAAGACTAACGGGGGCGACGATACCACATACGGTGT
AGCACTCAATGAACAACATTTCCGTGACCTTGTGATGAATGTGACAACAC
CACCAGCCACATACTCTCAGAAGCAGTCCACAAGCTCTCTCTTGATGATG
GGTTTTCCATCACGAACCGTTGAGGCTTACCCTTCACTTTGTGCATGCCA
TTCCAAGCCTTCTCGTGGGGGCTATCTGTGCTCACGGTGCAACAGCAAGG
TTTGTGGTCTCCCTGCCGAGTGTCCTTCCTGTGGTCTTACTTTGATTCTT
TCAACCCATCTTGCTCGGTCGTATCACCATCTGTTTCCCCTTATGAACTG
GGTGGAAGTTTCGTGGCAACACGCTTCACGCAGTAGTGTCTGTTTCGCTT
GTGGGATATCCTTTCCATCAGTACCACCCAAGGAGCAGTGGCATACTACA
GAGGGACAAACAAAGGGAATAAGCGTAAGCAGCCGCTATGAATGTACTGT
TTGCAGAAACCATTTTTGCATTGACTGTGACCTTTTCGCTCATGAGGTTG
TGCACAACTGCCCTGGCTGCCAAAGCAAGATGATAGTTGCCACGAGTTCT
GAGCCCTCTCAGGACCACGAAGCTCTAGACAGGATGGATACCTCTGCATG
ATCATATGGTTGATTCGAATAAAATATCAATATAATGACCACGGGGCTTA
CTTCTCGACCGGTTGGATAGATGCCCCCGCCATCGCTCTCGCTAGCGCGA
CGAGTTTGTTATCAATCAAGCTGTCAAACTAACCAACAGTCCAACACAGT
GACATAGGGCCCGAGGCGGACTATATATGCTCTAATTATTATCAGTCGAG
ATGTCGGTGCGAATAAGGCCATCAAATTCTGTAGAGTATGTCTATGCCAC
CTAACTAGAAAGGATATCTTCTGGAATATGTTAAGCATGATGGAACGGTT
CTTCGACATGGTGGAGTTGCGACC
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Coding sequence (CDS) from alignment at KZ851954.1:120121..122044+

>M747DRAFT_289378-T1 ID=M747DRAFT_289378-T1|Name=M747DRAFT_289378-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=4122bp|location=Sequence derived from alignment at KZ851954.1:120121..122044+ (Aspergillus niger ATCC 13496)
ATGGTCGATTCCGATGAAGAGTACATAGGAGAAATCTCTGAGGATGAGGA
TGAAAACAATCTTCTACCAGGGTCTCGCGGAGAGACTACGTCCGCATCCC
GCTCCAAGAGGAGAAAGCACCGTGGAGGCGCAGAATGGGAGGTCTCGAGA
ACATGGGAAACCTTAGTTGAAGGTGCCGACGGTACAATCAGCTCTACAGT
TGAAGGGCTTCTCGAGGCTGGGAAAAGGAAAAGGCTCCTCAGAGATACGA
CTCCTTTACAACGGGGTATAATCCGTCATCTCATCTTGATTATAGATCTG
TCACAATCTATGACCGAGAAAGATCTCCGACCGACACGTTACTTATTGTC
CTTACGGTATGCACAAGAGTTCGTGAGGGAATTTTTCGAGCAAAATCCCA
TCTCTCAACTCGGCGTTCTTGGCCTCAAAGATGGACTGGCGGTCAGAGTC
AGTGATATGAGTGGAAACCCTACTGAGCATATTAGTGCCATCCAATCACT
GCGAGACCAGGATCCGAAAGGTCTTCCTAGTCTGCAAAATGGCTTCGAAA
TGGCTCGTGGTGCCTTGTTCCATACTCCAAGCCATGGCACCCGTGAGATC
TTCGTCATTTTTGGCTCCCTCCTTTCCTCTGATCCCGGTGATATTCACCA
AACAATTACTACGCTTATAAATGATAAAATACGTGTTGGAATCGTGGGCC
TTGCTGCTCAAGTGGCAATCTGTCGCGAAATTTGTGGCAAGACTAACGGG
GGCGACGATACCACATACGGTGTAGCACTCAATGAACAACATTTCCGTGA
CCTTGTGATGAATGTGACAACACCACCAGCCACATACTCTCAGAAGCAGT
CCACAAGCTCTCTCTTGATGATGGGTTTTCCATCACGAACCGTTGAGGCT
TACCCTTCACTTTGTGCATGCCATTCCAAGCCTTCTCGTGGGGGCTATCT
GTGCTCACGGTGCAACAGCAAGGTTTGTGGTCTCCCTGCCGAGTGTCCTT
CCTGTGGTCTTACTTTGATTCTTTCAACCCATCTTGCTCGGTCGTATCAC
CATCTGTTTCCCCTTATGAACTGGGTGGAAGTTTCGTGGCAACACGCTTC
ACGCAGTAGTGTCTGTTTCGCTTGTGGGATATCCTTTCCATCAGTACCAC
CCAAGGAGCAGTGGCATACTACAGAGGGACAAACAAAGGGAATAAGCGTA
AGCAGCCGCTATGAATGTACTGTTTGCAGAAACCATTTTTGCATTGACTG
TGACCTTTTCGCTCATGAGGTTGTGCACAACTGCCCTGGCTGCCAAAGCA
AGATGATAGTTGCCACGAGTTCTGAGCCCTCTCAGGACCACGAAGCTCTA
GACAGGATGGATACCTCTGCATGAATGGTCGATTCCGATGAAGAGTACAT
AGGAGAAATCTCTGAGGATGAGGATGAAAACAATCTTCTACCAGGGTCTC
GCGGAGAGACTACGTCCGCATCCCGCTCCAAGAGGAGAAAGCACCGTGGA
GGCGCAGAATGGGAGGTCTCGAGAACATGGGAAACCTTAGTTGAAGGTGC
CGACGGTACAATCAGCTCTACAGTTGAAGGGCTTCTCGAGGCTGGGAAAA
GGAAAAGGCTCCTCAGAGATACGACTCCTTTACAACGGGGTATAATCCGT
CATCTCATCTTGATTATAGATCTGTCACAATCTATGACCGAGAAAGATCT
CCGACCGACACGTTACTTATTGTCCTTACGGTATGCACAAGAGTTCGTGA
GGGAATTTTTCGAGCAAAATCCCATCTCTCAACTCGGCGTTCTTGGCCTC
AAAGATGGACTGGCGGTCAGAGTCAGTGATATGAGTGGAAACCCTACTGA
GCATATTAGTGCCATCCAATCACTGCGAGACCAGGATCCGAAAGGTCTTC
CTAGTCTGCAAAATGGCTTCGAAATGGCTCGTGGTGCCTTGTTCCATACT
CCAAGCCATGGCACCCGTGAGATCTTCGTCATTTTTGGCTCCCTCCTTTC
CTCTGATCCCGGTGATATTCACCAAACAATTACTACGCTTATAAATGATA
AAATACGTGTTGGAATCGTGGGCCTTGCTGCTCAAGTGGCAATCTGTCGC
GAAATTTGTGGCAAGACTAACGGGGGCGACGATACCACATACGGTGTAGC
ACTCAATGAACAACATTTCCGTGACCTTGTGATGAATGTGACAACACCAC
CAGCCACATACTCTCAGAAGCAGTCCACAAGCTCTCTCTTGATGATGGGT
TTTCCATCACGAACCGTTGAGGCTTACCCTTCACTTTGTGCATGCCATTC
CAAGCCTTCTCGTGGGGGCTATCTGTGCTCACGGTGCAACAGCAAGGTTT
GTGGTCTCCCTGCCGAGTGTCCTTCCTGTGGTCTTACTTTGATTCTTTCA
ACCCATCTTGCTCGGTCGTATCACCATCTGTTTCCCCTTATGAACTGGGT
GGAAGTTTCGTGGCAACACGCTTCACGCAGTAGTGTCTGTTTCGCTTGTG
GGATATCCTTTCCATCAGTACCACCCAAGGAGCAGTGGCATACTACAGAG
GGACAAACAAAGGGAATAAGCGTAAGCAGCCGCTATGAATGTACTGTTTG
CAGAAACCATTTTTGCATTGACTGTGACCTTTTCGCTCATGAGGTTGTGC
ACAACTGCCCTGGCTGCCAAAGCAAGATGATAGTTGCCACGAGTTCTGAG
CCCTCTCAGGACCACGAAGCTCTAGACAGGATGGATACCTCTGCATGAAT
GGTCGATTCCGATGAAGAGTACATAGGAGAAATCTCTGAGGATGAGGATG
AAAACAATCTTCTACCAGGGTCTCGCGGAGAGACTACGTCCGCATCCCGC
TCCAAGAGGAGAAAGCACCGTGGAGGCGCAGAATGGGAGGTCTCGAGAAC
ATGGGAAACCTTAGTTGAAGGTGCCGACGGTACAATCAGCTCTACAGTTG
AAGGGCTTCTCGAGGCTGGGAAAAGGAAAAGGCTCCTCAGAGATACGACT
CCTTTACAACGGGGTATAATCCGTCATCTCATCTTGATTATAGATCTGTC
ACAATCTATGACCGAGAAAGATCTCCGACCGACACGTTACTTATTGTCCT
TACGGTATGCACAAGAGTTCGTGAGGGAATTTTTCGAGCAAAATCCCATC
TCTCAACTCGGCGTTCTTGGCCTCAAAGATGGACTGGCGGTCAGAGTCAG
TGATATGAGTGGAAACCCTACTGAGCATATTAGTGCCATCCAATCACTGC
GAGACCAGGATCCGAAAGGTCTTCCTAGTCTGCAAAATGGCTTCGAAATG
GCTCGTGGTGCCTTGTTCCATACTCCAAGCCATGGCACCCGTGAGATCTT
CGTCATTTTTGGCTCCCTCCTTTCCTCTGATCCCGGTGATATTCACCAAA
CAATTACTACGCTTATAAATGATAAAATACGTGTTGGAATCGTGGGCCTT
GCTGCTCAAGTGGCAATCTGTCGCGAAATTTGTGGCAAGACTAACGGGGG
CGACGATACCACATACGGTGTAGCACTCAATGAACAACATTTCCGTGACC
TTGTGATGAATGTGACAACACCACCAGCCACATACTCTCAGAAGCAGTCC
ACAAGCTCTCTCTTGATGATGGGTTTTCCATCACGAACCGTTGAGGCTTA
CCCTTCACTTTGTGCATGCCATTCCAAGCCTTCTCGTGGGGGCTATCTGT
GCTCACGGTGCAACAGCAAGGTTTGTGGTCTCCCTGCCGAGTGTCCTTCC
TGTGGTCTTACTTTGATTCTTTCAACCCATCTTGCTCGGTCGTATCACCA
TCTGTTTCCCCTTATGAACTGGGTGGAAGTTTCGTGGCAACACGCTTCAC
GCAGTAGTGTCTGTTTCGCTTGTGGGATATCCTTTCCATCAGTACCACCC
AAGGAGCAGTGGCATACTACAGAGGGACAAACAAAGGGAATAAGCGTAAG
CAGCCGCTATGAATGTACTGTTTGCAGAAACCATTTTTGCATTGACTGTG
ACCTTTTCGCTCATGAGGTTGTGCACAACTGCCCTGGCTGCCAAAGCAAG
ATGATAGTTGCCACGAGTTCTGAGCCCTCTCAGGACCACGAAGCTCTAGA
CAGGATGGATACCTCTGCATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000439transcription factor TFIIH core complex
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
GO:0006351transcription, DNA-templated
GO:0006281DNA repair
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
M747DRAFT_289378M747DRAFT_289378Aspergillus niger ATCC 13496gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_289378-T1M747DRAFT_289378-T1-proteinAspergillus niger ATCC 13496polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_289378-T1.utr5p1M747DRAFT_289378-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_289378-T1.exon1M747DRAFT_289378-T1.exon1Aspergillus niger ATCC 13496exon
M747DRAFT_289378-T1.exon2M747DRAFT_289378-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_289378-T1.exon3M747DRAFT_289378-T1.exon3Aspergillus niger ATCC 13496exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_289378-T1.cdsM747DRAFT_289378-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_289378-T1.utr3p1M747DRAFT_289378-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG09262ILV
DBxrefInterPro:IPR013087
DBxrefInterPro:IPR007198
DBxrefInterPro:IPR012170
DBxrefInterPro:IPR036465
DBxrefInterPro:IPR013083
DBxrefInterPro:IPR002035
DBxrefInterPro:IPR004595
DBxrefPFAM:PF13519
DBxrefPFAM:PF00092
DBxrefPFAM:PF04056
DBxrefPFAM:PF07975
Product subunit SSL1
ProductTFIIH basal transcription factor complex
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851954.1supercontigKZ851954.1:120121..122044 +
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