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M747DRAFT_290684-T1, M747DRAFT_290684-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_290684-T1
Unique NameM747DRAFT_290684-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851969.1:15356..16366+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_290684-T1 ID=M747DRAFT_290684-T1|Name=M747DRAFT_290684-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1011bp|location=Sequence derived from alignment at KZ851969.1:15356..16366+ (Aspergillus niger ATCC 13496)
CGGATCGCACGCGCCAGACAGACAGACATCCTCGAACGAACTTCCCTTTC
GCGCTGGCATTCTGTCTCCGTTGCTTGTTTTATCACCGCTTTGAATAACG
AGTCAAGCTTTTTCAGCTTGCTTCGTATCTCCTCCTTCTTCGACTTTGAT
CCCTTCGCTAGATTTTCTCACATTCCGCAATGGGCAAGTTGACCAGCACG
ATCGGTATCCCGATCAAGCTTCTTAATGAGGCGCAGGTTAGTCTATCCTT
CATCCTAAGCTATTGCTTGTATCTATGTATTGCGATTAAGCTAACGCGGG
ATTCTGCATAGGGCCACGTCGTCACACTCGAGATCACGTCCGGGGTTGTC
TACCGTGGAAAACTCCTAGAGGGTGCGTTGCTTCACCCCTCCTCAACACC
TATCCATCCTCTCCAATACACCAATGTCAAATATTCTCGTCACTAACATC
CTCTGCTATAGCTGAGGACAACATGAACGTCCAACTGAAGGATATCACGG
TCACCGCGCGCGACGGCCGCGTGTCACATCTCGACCAGGTGTACATTCGG
GGAAGCCATGTGAAGTTTTTCATTGTGCCGGATATGCTTAGGTCGGTTGC
CACCCACCTTAATTTTCTACATATTTATCAGGGATATGGGGCAATGCTAA
CTAGTATGGTTATAGAAACGCTCCCATGTTCCGCTCACGAGGCCAGCGCG
GTCGCGGTGTCGGTCTTGCTCGTGGTAAGGCCACGGTGCAGAGGGCGAGG
GGACAGAGACGGGGTTGATTCGGATGGAATACTAGTGGATAAGTGGATGG
ATGCTTCGGTGCGGCGTTTTGTTCTATTTGAGTTCTTTCTGTGTCTCCTT
TTCGTATCTATAAACTTGTCTCGTATTGGCTGTCTGGGTCGTCGGGTCTG
ATATCATATCGAATAAATCGAGTTGATTGGGTTAAATTGGGTTTCCTGAG
GGCATTGATGATGGTAATGTGATTGTGGCAGTGCTGCTTGGGTTCCGTAT
GGTGTTTCCTT
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Coding sequence (CDS) from alignment at KZ851969.1:15356..16366+

>M747DRAFT_290684-T1 ID=M747DRAFT_290684-T1|Name=M747DRAFT_290684-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=1404bp|location=Sequence derived from alignment at KZ851969.1:15356..16366+ (Aspergillus niger ATCC 13496)
ATGGGCAAGTTGACCAGCACGATCGGTATCCCGATCAAGCTTCTTAATGA
GGCGCAGGGCCACGTCGTCACACTCGAGATCACGTCCGGGGTTGTCTACC
GTGGAAAACTCCTAGAGGCTGAGGACAACATGAACGTCCAACTGAAGGAT
ATCACGGTCACCGCGCGCGACGGCCGCGTGTCACATCTCGACCAGGTGTA
CATTCGGGGAAGCCATGTGAAGTTTTTCATTGTGCCGGATATGCTTAGAA
ACGCTCCCATGTTCCGCTCACGAGGCCAGCGCGGTCGCGGTGTCGGTCTT
GCTCGTGGTAAGGCCACGGTGCAGAGGGCGAGGGGACAGAGACGGGGTTG
AATGGGCAAGTTGACCAGCACGATCGGTATCCCGATCAAGCTTCTTAATG
AGGCGCAGGGCCACGTCGTCACACTCGAGATCACGTCCGGGGTTGTCTAC
CGTGGAAAACTCCTAGAGGCTGAGGACAACATGAACGTCCAACTGAAGGA
TATCACGGTCACCGCGCGCGACGGCCGCGTGTCACATCTCGACCAGGTGT
ACATTCGGGGAAGCCATGTGAAGTTTTTCATTGTGCCGGATATGCTTAGA
AACGCTCCCATGTTCCGCTCACGAGGCCAGCGCGGTCGCGGTGTCGGTCT
TGCTCGTGGTAAGGCCACGGTGCAGAGGGCGAGGGGACAGAGACGGGGTT
GAATGGGCAAGTTGACCAGCACGATCGGTATCCCGATCAAGCTTCTTAAT
GAGGCGCAGGGCCACGTCGTCACACTCGAGATCACGTCCGGGGTTGTCTA
CCGTGGAAAACTCCTAGAGGCTGAGGACAACATGAACGTCCAACTGAAGG
ATATCACGGTCACCGCGCGCGACGGCCGCGTGTCACATCTCGACCAGGTG
TACATTCGGGGAAGCCATGTGAAGTTTTTCATTGTGCCGGATATGCTTAG
AAACGCTCCCATGTTCCGCTCACGAGGCCAGCGCGGTCGCGGTGTCGGTC
TTGCTCGTGGTAAGGCCACGGTGCAGAGGGCGAGGGGACAGAGACGGGGT
TGAATGGGCAAGTTGACCAGCACGATCGGTATCCCGATCAAGCTTCTTAA
TGAGGCGCAGGGCCACGTCGTCACACTCGAGATCACGTCCGGGGTTGTCT
ACCGTGGAAAACTCCTAGAGGCTGAGGACAACATGAACGTCCAACTGAAG
GATATCACGGTCACCGCGCGCGACGGCCGCGTGTCACATCTCGACCAGGT
GTACATTCGGGGAAGCCATGTGAAGTTTTTCATTGTGCCGGATATGCTTA
GAAACGCTCCCATGTTCCGCTCACGAGGCCAGCGCGGTCGCGGTGTCGGT
CTTGCTCGTGGTAAGGCCACGGTGCAGAGGGCGAGGGGACAGAGACGGGG
TTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
Vocabulary: Biological Process
TermDefinition
GO:0000387spliceosomal snRNP assembly
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SMD3M747DRAFT_290684Aspergillus niger ATCC 13496gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_290684-T1M747DRAFT_290684-T1-proteinAspergillus niger ATCC 13496polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_290684-T1.utr5p1M747DRAFT_290684-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_290684-T1.exon1M747DRAFT_290684-T1.exon1Aspergillus niger ATCC 13496exon
M747DRAFT_290684-T1.exon2M747DRAFT_290684-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_290684-T1.exon3M747DRAFT_290684-T1.exon3Aspergillus niger ATCC 13496exon
M747DRAFT_290684-T1.exon4M747DRAFT_290684-T1.exon4Aspergillus niger ATCC 13496exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_290684-T1.cdsM747DRAFT_290684-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_290684-T1.utr3p1M747DRAFT_290684-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


Properties
Property NameValue
DBxrefInterPro:IPR010920
DBxrefInterPro:IPR034099
DBxrefInterPro:IPR001163
DBxrefPFAM:PF01423
Productsmall nuclear ribonucleoprotein Sm D3
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851969.1supercontigKZ851969.1:15356..16366 +
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