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M747DRAFT_295896-T1, M747DRAFT_295896-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_295896-T1
Unique NameM747DRAFT_295896-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851915.1:528122..529823+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_295896-T1 ID=M747DRAFT_295896-T1|Name=M747DRAFT_295896-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1702bp|location=Sequence derived from alignment at KZ851915.1:528122..529823+ (Aspergillus niger ATCC 13496)
GCAGGTGTGTAAAGGTGTACAGGGAGGGGGGAAGTCCGAACAGAAAGAGA
AGGAAGGCGGCGGCAAAGAAAAAGTTCCGCCGCGGAACAAGAGCGGAGAA
CAGAACATGATTGGTCCGTGCACGCAGCTGGATTATCAACCTTCCATGCC
ACTGAAGAACCACCGTCAGTCGTTCTTTCTACCAACCTGTCGCGAGCCTC
GCGTACTGTGCTGTCCAGAGTGTCTTTGAGCTGCAGTGATCCTCAGCATG
CCTCCTGCTCGTGATATCATGGCTCACCGGGGGGATGACGACGGTGAGTC
TATTGCTAATGACACTTGAATATTCACTGACTGCCAGCAGAGGTGTGCCC
TGTCTGCAAATCCTCCCGTTACCTGAACCCAGACATGCGATTTCTCATCA
ATCCCGAATGCTACCACAAGATGTGCGAGTCCTGCGTGGACCGAATCTTC
TCCTCAGGCCCTGCGAACTGTCCCGTGGCGGGCTGTCACAAGACCCTGCG
CAAGAACCGATTTCGCAAGCAGACATTCGAGGATATTAATGTGGAAAGAG
AGGTGGACATTCGGCGCAGAGTAATGCAAATGTATGCCAATATCAAATTT
GCTAGACCCTGGAATAAGCCACTAATCTTCCTCTAGTCTTAACCGCCGCG
AAGAAGAGTTTGATTCGAAACGAGCCTATGATGACTTCCTCGAACAACGC
GAAGAGATAATAGCGAACCTTGTCCATGGCACAGATGTGGCGAAGACAGA
AAGCGACCTACAAAGATATGCTGCAGACAACATGCGGTCGATTCGCGCCA
ATCAAGCCCTCGAAGCGCAAGAGGCCTCATCCTTCCGAGAACAACAAACA
CACGAACAAGAACTGGCACGTCTTCGGCGAGAGGCAGCTAGACTGGAATA
TGAGAACGAACGGAAGGAGATGCTTGCCGGCCGGGAAGACGTTCTCAGCC
GTCTTGCGGCAGGTCGACCTGGCGACGCAGCGGCTATCGCCCGCGAAGGT
CACAAGGTGCTGCTTAAGAAATCTTCTGCTCGCCGCAGTGAAGAAGACCG
GATTCGACAGAAGCAGGCTGCTTTGCGCAGCTCAGATGCCAGGAAAGCTG
GGCAGGGCGCCCTTACCACGGCGGACAGGGCGGATGACAGTGGTGATTCT
GGCTTGATCAAGGGTCTTAAGAAGATTGTGACGCCCGAGCCTGAGAAGCC
TTATGATCCTTTTGGTGGCCTTGTTCCCAACAAGAGGGACTACTATACTC
TGCGCGACTATTACCCGAACAGCTATCTCGACCCCATTCGCCAGGACACT
CGTATGCAGGCTGGTGGATACGACCTTCAGGAATACTACTCGCGTACTTT
GATGGAGGCCTTTGCGGGTTTGGGTTGCTTCATCGATGAGGAGGTGTCTA
AGCGAGAGGTTACAAGTACGATGGGTATCTCTAGACCCGTCGCTACAGAA
GGGGCTGCCTTGGCGGCTGTTTCAAGTGCAGGCGCCCCAGAAGCCAGCTC
GTGACCCACGGCTGTTGTTTCTCGTTTCATCCTCTGATAGAGATTCTGGA
ATTGGTTTACCATAACATTTGGCTGCGGCGTTTAGGCATTTGTGTTGCAT
AGCGATGGCGTCTTTTTGACAGATTTTGAGCATTCGGAAAAGCTATATCA
CAGAGATTGTTCAATTCGTTCAGGTACAATAGGTATACAAACAGGTAAAG
CT
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Coding sequence (CDS) from alignment at KZ851915.1:528122..529823+

>M747DRAFT_295896-T1 ID=M747DRAFT_295896-T1|Name=M747DRAFT_295896-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=3465bp|location=Sequence derived from alignment at KZ851915.1:528122..529823+ (Aspergillus niger ATCC 13496)
ATGCCTCCTGCTCGTGATATCATGGCTCACCGGGGGGATGACGACGAGGT
GTGCCCTGTCTGCAAATCCTCCCGTTACCTGAACCCAGACATGCGATTTC
TCATCAATCCCGAATGCTACCACAAGATGTGCGAGTCCTGCGTGGACCGA
ATCTTCTCCTCAGGCCCTGCGAACTGTCCCGTGGCGGGCTGTCACAAGAC
CCTGCGCAAGAACCGATTTCGCAAGCAGACATTCGAGGATATTAATGTGG
AAAGAGAGGTGGACATTCGGCGCAGAGTAATGCAAATTCTTAACCGCCGC
GAAGAAGAGTTTGATTCGAAACGAGCCTATGATGACTTCCTCGAACAACG
CGAAGAGATAATAGCGAACCTTGTCCATGGCACAGATGTGGCGAAGACAG
AAAGCGACCTACAAAGATATGCTGCAGACAACATGCGGTCGATTCGCGCC
AATCAAGCCCTCGAAGCGCAAGAGGCCTCATCCTTCCGAGAACAACAAAC
ACACGAACAAGAACTGGCACGTCTTCGGCGAGAGGCAGCTAGACTGGAAT
ATGAGAACGAACGGAAGGAGATGCTTGCCGGCCGGGAAGACGTTCTCAGC
CGTCTTGCGGCAGGTCGACCTGGCGACGCAGCGGCTATCGCCCGCGAAGG
TCACAAGGTGCTGCTTAAGAAATCTTCTGCTCGCCGCAGTGAAGAAGACC
GGATTCGACAGAAGCAGGCTGCTTTGCGCAGCTCAGATGCCAGGAAAGCT
GGGCAGGGCGCCCTTACCACGGCGGACAGGGCGGATGACAGTGGTGATTC
TGGCTTGATCAAGGGTCTTAAGAAGATTGTGACGCCCGAGCCTGAGAAGC
CTTATGATCCTTTTGGTGGCCTTGTTCCCAACAAGAGGGACTACTATACT
CTGCGCGACTATTACCCGAACAGCTATCTCGACCCCATTCGCCAGGACAC
TCGTATGCAGGCTGGTGGATACGACCTTCAGGAATACTACTCGCGTACTT
TGATGGAGGCCTTTGCGGGTTTGGGTTGCTTCATCGATGAGGAGGTGTCT
AAGCGAGAGGTTACAAGTACGATGGGTATCTCTAGACCCGTCGCTACAGA
AGGGGCTGCCTTGGCGGCTGTTTCAAGTGCAGGCGCCCCAGAAGCCAGCT
CGTGAATGCCTCCTGCTCGTGATATCATGGCTCACCGGGGGGATGACGAC
GAGGTGTGCCCTGTCTGCAAATCCTCCCGTTACCTGAACCCAGACATGCG
ATTTCTCATCAATCCCGAATGCTACCACAAGATGTGCGAGTCCTGCGTGG
ACCGAATCTTCTCCTCAGGCCCTGCGAACTGTCCCGTGGCGGGCTGTCAC
AAGACCCTGCGCAAGAACCGATTTCGCAAGCAGACATTCGAGGATATTAA
TGTGGAAAGAGAGGTGGACATTCGGCGCAGAGTAATGCAAATTCTTAACC
GCCGCGAAGAAGAGTTTGATTCGAAACGAGCCTATGATGACTTCCTCGAA
CAACGCGAAGAGATAATAGCGAACCTTGTCCATGGCACAGATGTGGCGAA
GACAGAAAGCGACCTACAAAGATATGCTGCAGACAACATGCGGTCGATTC
GCGCCAATCAAGCCCTCGAAGCGCAAGAGGCCTCATCCTTCCGAGAACAA
CAAACACACGAACAAGAACTGGCACGTCTTCGGCGAGAGGCAGCTAGACT
GGAATATGAGAACGAACGGAAGGAGATGCTTGCCGGCCGGGAAGACGTTC
TCAGCCGTCTTGCGGCAGGTCGACCTGGCGACGCAGCGGCTATCGCCCGC
GAAGGTCACAAGGTGCTGCTTAAGAAATCTTCTGCTCGCCGCAGTGAAGA
AGACCGGATTCGACAGAAGCAGGCTGCTTTGCGCAGCTCAGATGCCAGGA
AAGCTGGGCAGGGCGCCCTTACCACGGCGGACAGGGCGGATGACAGTGGT
GATTCTGGCTTGATCAAGGGTCTTAAGAAGATTGTGACGCCCGAGCCTGA
GAAGCCTTATGATCCTTTTGGTGGCCTTGTTCCCAACAAGAGGGACTACT
ATACTCTGCGCGACTATTACCCGAACAGCTATCTCGACCCCATTCGCCAG
GACACTCGTATGCAGGCTGGTGGATACGACCTTCAGGAATACTACTCGCG
TACTTTGATGGAGGCCTTTGCGGGTTTGGGTTGCTTCATCGATGAGGAGG
TGTCTAAGCGAGAGGTTACAAGTACGATGGGTATCTCTAGACCCGTCGCT
ACAGAAGGGGCTGCCTTGGCGGCTGTTTCAAGTGCAGGCGCCCCAGAAGC
CAGCTCGTGAATGCCTCCTGCTCGTGATATCATGGCTCACCGGGGGGATG
ACGACGAGGTGTGCCCTGTCTGCAAATCCTCCCGTTACCTGAACCCAGAC
ATGCGATTTCTCATCAATCCCGAATGCTACCACAAGATGTGCGAGTCCTG
CGTGGACCGAATCTTCTCCTCAGGCCCTGCGAACTGTCCCGTGGCGGGCT
GTCACAAGACCCTGCGCAAGAACCGATTTCGCAAGCAGACATTCGAGGAT
ATTAATGTGGAAAGAGAGGTGGACATTCGGCGCAGAGTAATGCAAATTCT
TAACCGCCGCGAAGAAGAGTTTGATTCGAAACGAGCCTATGATGACTTCC
TCGAACAACGCGAAGAGATAATAGCGAACCTTGTCCATGGCACAGATGTG
GCGAAGACAGAAAGCGACCTACAAAGATATGCTGCAGACAACATGCGGTC
GATTCGCGCCAATCAAGCCCTCGAAGCGCAAGAGGCCTCATCCTTCCGAG
AACAACAAACACACGAACAAGAACTGGCACGTCTTCGGCGAGAGGCAGCT
AGACTGGAATATGAGAACGAACGGAAGGAGATGCTTGCCGGCCGGGAAGA
CGTTCTCAGCCGTCTTGCGGCAGGTCGACCTGGCGACGCAGCGGCTATCG
CCCGCGAAGGTCACAAGGTGCTGCTTAAGAAATCTTCTGCTCGCCGCAGT
GAAGAAGACCGGATTCGACAGAAGCAGGCTGCTTTGCGCAGCTCAGATGC
CAGGAAAGCTGGGCAGGGCGCCCTTACCACGGCGGACAGGGCGGATGACA
GTGGTGATTCTGGCTTGATCAAGGGTCTTAAGAAGATTGTGACGCCCGAG
CCTGAGAAGCCTTATGATCCTTTTGGTGGCCTTGTTCCCAACAAGAGGGA
CTACTATACTCTGCGCGACTATTACCCGAACAGCTATCTCGACCCCATTC
GCCAGGACACTCGTATGCAGGCTGGTGGATACGACCTTCAGGAATACTAC
TCGCGTACTTTGATGGAGGCCTTTGCGGGTTTGGGTTGCTTCATCGATGA
GGAGGTGTCTAAGCGAGAGGTTACAAGTACGATGGGTATCTCTAGACCCG
TCGCTACAGAAGGGGCTGCCTTGGCGGCTGTTTCAAGTGCAGGCGCCCCA
GAAGCCAGCTCGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005675transcription factor TFIIH holo complex
Vocabulary: Biological Process
TermDefinition
GO:0006289nucleotide-excision repair
GO:0045737positive regulation of cyclin-dependent protein serine/threonine kinase activity
Vocabulary: Molecular Function
TermDefinition
GO:0061575cyclin-dependent protein serine/threonine kinase activator activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
M747DRAFT_295896M747DRAFT_295896Aspergillus niger ATCC 13496gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_295896-T1M747DRAFT_295896-T1-proteinAspergillus niger ATCC 13496polypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_295896-T1.utr5p1M747DRAFT_295896-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_295896-T1.exon1M747DRAFT_295896-T1.exon1Aspergillus niger ATCC 13496exon
M747DRAFT_295896-T1.exon2M747DRAFT_295896-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_295896-T1.exon3M747DRAFT_295896-T1.exon3Aspergillus niger ATCC 13496exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_295896-T1.cdsM747DRAFT_295896-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_295896-T1.utr3p1M747DRAFT_295896-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG092649XV
DBxrefInterPro:IPR017907
DBxrefInterPro:IPR001841
DBxrefInterPro:IPR013083
DBxrefInterPro:IPR004575
DBxrefInterPro:IPR015877
DBxrefPFAM:PF17121
DBxrefPFAM:PF06391
ProductRNA polymerase II transcription factor B subunit 3
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851915.1supercontigKZ851915.1:528122..529823 +
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