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Sequences
The following sequences are available for this feature:
mRNA from alignment at KZ851922.1:556647..559217- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >M747DRAFT_332785-T1 ID=M747DRAFT_332785-T1|Name=M747DRAFT_332785-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=2571bp|location=Sequence derived from alignment at KZ851922.1:556647..559217- (Aspergillus niger ATCC 13496)
TTTTTGGATTCGAAAAGGGTCTGGATCACAAGACGCGCTGATTCTAGCCC
AATTGTCGCATTGCGCAGTCCAGTTCCTTTGGTAATTCGGTAGTCATTTC
CTTCCTTTCTCTCGAGGAAAGCGACTGTTCACAATGGAGCCGACAACCGC
TCAGGAACAGCTGCCCGCTCCAGAACAGCTGCCCGCTCCAGAGGCTAATG
CGCCCAAGCGTGATCCGGAGAATGGCGATGCCGCTGCAGACCACCAGGCC
CAGGAGCCACCCTCGAAGAAAGCCAGACTCGATGATTCGGCGGATTCTAA
CGGACAGACGGCTGATGCGCCCGCCCCGCGTATGAAGGGCGTTGCTCCTA
TCAAGCCCGAGTATGTGATTGATCTAAATCTGTTTGCGATGCGCCCGCTC
TAACCGACTTCCTCTGCTAGGTTTATTATCGACCAACAACCCACGAGAGG
CCAGACCGCTTCCGATGCCAATGCTGACGATGCTGCGGAAGCTGCACACC
ACGACGGGCGCGCCGATGAGCAGAATGGAAAGAAGAAAAAGAAGAAGACT
GGTCAGAATACGAACCGCACGTTTGGTCGATCCGAGGATGCGAAAGGATT
GTGCTCTAGTGTCAACTTCAGGCCTGAATTCTCTCCTGCCGAGTGCACTT
TCGGTGAAAAGTGTCGGTACGAGCATGACCTGCGCACATACTTGAAGGAG
CATAAGCGGGAAGATCTTACGACGTTCAATGGCATGTGTCCTGTCTGGGA
TGTCCACGGAAAGTGCTTCGTGGGCTGGAAATGTCGTTTTGTCGGTTCAC
ACTCGGAGGAGCGAGAGACTGCCGATGGAAGGAAAGAGTTGGTTCTTATT
GAGGATGAGGAGCGCAAGAAGAAGGTTCAGCGGCTTGTTCCCTTTGCTGG
AGAGGATGGGGCTGTGAATGTTGCTTCGATGGAGGATAAGATTGCCTTGG
CGAGGAGGAAGATGGACTTCCCAAGAGCTGGGCCGTATAGTGCTTGGCTG
GAAAACACATCCAGGACCATTGAGAAGGAGCTCCACAAACGGCATCGTGC
TGCGCCCGTAGGAGCTGAAACCAAGGATGGAGAGTCTAAGGATGCAGAAT
CTAAGGATGCAGATAGCAAGGACGAAAAGGAGGAGAACCGGGCTATGTAC
GTTGAGCCGCCATTCATGCCATCAGAGAAGCGCCGACTGTACTTTGGACC
CGAAACACCGGCACTGGCGCCTTTGACTACCCAAGGCAATATGCCTTTCC
GAAGACTTTGTGTCGAGCTTGGCGCACAATTTACCTATTCTGAGATGGCC
ATGAGCTTGCCCTTGATCCAGGGTAACAAGTCGGAGTGGGCCTTAATGCG
AGCCCATGAGTCGGAGATGCTCCCTCCCACGATGCTGCCCGGGGCAGACA
TCGTGCAGGGCTATGACAACTCCAAGGACATGAAGTTTGGTGCTCAGATT
GCAGCAAACAAGCCCTGGCAGGCGTTCAAGGCTACAGAGGCGCTGGCTAA
AGTTACTCCAAACCTGCGTGTCATCGATCTGAACTGTGGCTGCCCGATTG
ACCTCGTCTTCAAGGATGGTGCTGGCTCTGCTCTTCTGGAGCACCCGTCG
AAGCTCGAGAAGATCATTCGTGGCATGAACACTGTTTCGGATCAGATTCC
TATCACGGTCAAGATCCGTATGGGAACGAAGGACAACAATCCGAACGCCT
TGAAACTGACGGAGCGTTTGCTGCTTGGGGGCTACGAAACCAGTCTGCTT
CATCACGACGGCGCCGCAGGTGCAGCGGCTATCACTCTTCACGGCCGTAG
CAGACAGCAGCGTTACACCAGACAAGCTGATTGGGAATACATCTCCGAAT
GTGCCGCCTTGATCAAGCGCCTGAACGAGAAGACTGACGCGGTGACGGAT
ACCATCCGGGAGCCTGACGCCCGTACGCAGCCAAACGGCGGGAAGGTTTA
CTTCCTGGGTAACGGTGACTGCTACTCTCATGTTGACTACGATAACCACA
TCAACAATGCTGGCGTTGATGCTGTTATGCTTGGTCGCGGTCCTCTGATC
AAGCCTTGGCTGTTCGAGGAAATTCAGGCGGGCCAGTACCTTGACAAGTC
TGCTACGGAACGTTTGGCAATGATTGAGAAGTTCTGTAAGTATGGTCTGG
AGGCATGGGGATCCGATGAGCACGGTGTTGGTACGACTAGACGCTTCTTG
ATGGAATGGCTGAGCTTCACTCGTCGCTATGTACCTATCGGGTTGCTCGA
GCATCTTCCCCCCTACATCAACGACCGGCCCCCGGCTTTCAGAGGCCGGA
ATGAGCTTGAGACACTGCTGGCCAGTGCCAACTACAAGGATTGGCTCAAG
ATCTCGTAAGTACCTTCTCCTGACCGGCTCACTCTTTCGAACTCATTCTA
ACAGCCTTCTAGGGAGATGTTCCTCGGACCGGCTCATAAGGACTTCAAGT
TCGAGCCCAAGCACAAGTCCAACTCGTATGACGAAGCGGAGGGTTAAACA
CACGCTGTCTAGATTAGGATTAACGCATAGAGACGATGTACATACCACAG
CTAGCAATCATATGCAATGAG back to topCoding sequence (CDS) from alignment at KZ851922.1:556647..559217- >M747DRAFT_332785-T1 ID=M747DRAFT_332785-T1|Name=M747DRAFT_332785-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=6741bp|location=Sequence derived from alignment at KZ851922.1:556647..559217- (Aspergillus niger ATCC 13496)
GGAGATGTTCCTCGGACCGGCTCATAAGGACTTCAAGTTCGAGCCCAAGC
ACAAGTCCAACTCGTATGACGAAGCGGAGGGTTAAGTTTATTATCGACCA
ACAACCCACGAGAGGCCAGACCGCTTCCGATGCCAATGCTGACGATGCTG
CGGAAGCTGCACACCACGACGGGCGCGCCGATGAGCAGAATGGAAAGAAG
AAAAAGAAGAAGACTGGTCAGAATACGAACCGCACGTTTGGTCGATCCGA
GGATGCGAAAGGATTGTGCTCTAGTGTCAACTTCAGGCCTGAATTCTCTC
CTGCCGAGTGCACTTTCGGTGAAAAGTGTCGGTACGAGCATGACCTGCGC
ACATACTTGAAGGAGCATAAGCGGGAAGATCTTACGACGTTCAATGGCAT
GTGTCCTGTCTGGGATGTCCACGGAAAGTGCTTCGTGGGCTGGAAATGTC
GTTTTGTCGGTTCACACTCGGAGGAGCGAGAGACTGCCGATGGAAGGAAA
GAGTTGGTTCTTATTGAGGATGAGGAGCGCAAGAAGAAGGTTCAGCGGCT
TGTTCCCTTTGCTGGAGAGGATGGGGCTGTGAATGTTGCTTCGATGGAGG
ATAAGATTGCCTTGGCGAGGAGGAAGATGGACTTCCCAAGAGCTGGGCCG
TATAGTGCTTGGCTGGAAAACACATCCAGGACCATTGAGAAGGAGCTCCA
CAAACGGCATCGTGCTGCGCCCGTAGGAGCTGAAACCAAGGATGGAGAGT
CTAAGGATGCAGAATCTAAGGATGCAGATAGCAAGGACGAAAAGGAGGAG
AACCGGGCTATGTACGTTGAGCCGCCATTCATGCCATCAGAGAAGCGCCG
ACTGTACTTTGGACCCGAAACACCGGCACTGGCGCCTTTGACTACCCAAG
GCAATATGCCTTTCCGAAGACTTTGTGTCGAGCTTGGCGCACAATTTACC
TATTCTGAGATGGCCATGAGCTTGCCCTTGATCCAGGGTAACAAGTCGGA
GTGGGCCTTAATGCGAGCCCATGAGTCGGAGATGCTCCCTCCCACGATGC
TGCCCGGGGCAGACATCGTGCAGGGCTATGACAACTCCAAGGACATGAAG
TTTGGTGCTCAGATTGCAGCAAACAAGCCCTGGCAGGCGTTCAAGGCTAC
AGAGGCGCTGGCTAAAGTTACTCCAAACCTGCGTGTCATCGATCTGAACT
GTGGCTGCCCGATTGACCTCGTCTTCAAGGATGGTGCTGGCTCTGCTCTT
CTGGAGCACCCGTCGAAGCTCGAGAAGATCATTCGTGGCATGAACACTGT
TTCGGATCAGATTCCTATCACGGTCAAGATCCGTATGGGAACGAAGGACA
ACAATCCGAACGCCTTGAAACTGACGGAGCGTTTGCTGCTTGGGGGCTAC
GAAACCAGTCTGCTTCATCACGACGGCGCCGCAGGTGCAGCGGCTATCAC
TCTTCACGGCCGTAGCAGACAGCAGCGTTACACCAGACAAGCTGATTGGG
AATACATCTCCGAATGTGCCGCCTTGATCAAGCGCCTGAACGAGAAGACT
GACGCGGTGACGGATACCATCCGGGAGCCTGACGCCCGTACGCAGCCAAA
CGGCGGGAAGGTTTACTTCCTGGGTAACGGTGACTGCTACTCTCATGTTG
ACTACGATAACCACATCAACAATGCTGGCGTTGATGCTGTTATGCTTGGT
CGCGGTCCTCTGATCAAGCCTTGGCTGTTCGAGGAAATTCAGGCGGGCCA
GTACCTTGACAAGTCTGCTACGGAACGTTTGGCAATGATTGAGAAGTTCT
GTAAGTATGGTCTGGAGGCATGGGGATCCGATGAGCACGGTGTTGGTACG
ACTAGACGCTTCTTGATGGAATGGCTGAGCTTCACTCGTCGCTATGTACC
TATCGGGTTGCTCGAGCATCTTCCCCCCTACATCAACGACCGGCCCCCGG
CTTTCAGAGGCCGGAATGAGCTTGAGACACTGCTGGCCAGTGCCAACTAC
AAGGATTGGCTCAAGATCTCATGGAGCCGACAACCGCTCAGGAACAGCTG
CCCGCTCCAGAACAGCTGCCCGCTCCAGAGGCTAATGCGCCCAAGCGTGA
TCCGGAGAATGGCGATGCCGCTGCAGACCACCAGGCCCAGGAGCCACCCT
CGAAGAAAGCCAGACTCGATGATTCGGCGGATTCTAACGGACAGACGGCT
GATGCGCCCGCCCCGCGTATGAAGGGCGTTGCTCCTATCAAGCCCGAGGA
GATGTTCCTCGGACCGGCTCATAAGGACTTCAAGTTCGAGCCCAAGCACA
AGTCCAACTCGTATGACGAAGCGGAGGGTTAAGTTTATTATCGACCAACA
ACCCACGAGAGGCCAGACCGCTTCCGATGCCAATGCTGACGATGCTGCGG
AAGCTGCACACCACGACGGGCGCGCCGATGAGCAGAATGGAAAGAAGAAA
AAGAAGAAGACTGGTCAGAATACGAACCGCACGTTTGGTCGATCCGAGGA
TGCGAAAGGATTGTGCTCTAGTGTCAACTTCAGGCCTGAATTCTCTCCTG
CCGAGTGCACTTTCGGTGAAAAGTGTCGGTACGAGCATGACCTGCGCACA
TACTTGAAGGAGCATAAGCGGGAAGATCTTACGACGTTCAATGGCATGTG
TCCTGTCTGGGATGTCCACGGAAAGTGCTTCGTGGGCTGGAAATGTCGTT
TTGTCGGTTCACACTCGGAGGAGCGAGAGACTGCCGATGGAAGGAAAGAG
TTGGTTCTTATTGAGGATGAGGAGCGCAAGAAGAAGGTTCAGCGGCTTGT
TCCCTTTGCTGGAGAGGATGGGGCTGTGAATGTTGCTTCGATGGAGGATA
AGATTGCCTTGGCGAGGAGGAAGATGGACTTCCCAAGAGCTGGGCCGTAT
AGTGCTTGGCTGGAAAACACATCCAGGACCATTGAGAAGGAGCTCCACAA
ACGGCATCGTGCTGCGCCCGTAGGAGCTGAAACCAAGGATGGAGAGTCTA
AGGATGCAGAATCTAAGGATGCAGATAGCAAGGACGAAAAGGAGGAGAAC
CGGGCTATGTACGTTGAGCCGCCATTCATGCCATCAGAGAAGCGCCGACT
GTACTTTGGACCCGAAACACCGGCACTGGCGCCTTTGACTACCCAAGGCA
ATATGCCTTTCCGAAGACTTTGTGTCGAGCTTGGCGCACAATTTACCTAT
TCTGAGATGGCCATGAGCTTGCCCTTGATCCAGGGTAACAAGTCGGAGTG
GGCCTTAATGCGAGCCCATGAGTCGGAGATGCTCCCTCCCACGATGCTGC
CCGGGGCAGACATCGTGCAGGGCTATGACAACTCCAAGGACATGAAGTTT
GGTGCTCAGATTGCAGCAAACAAGCCCTGGCAGGCGTTCAAGGCTACAGA
GGCGCTGGCTAAAGTTACTCCAAACCTGCGTGTCATCGATCTGAACTGTG
GCTGCCCGATTGACCTCGTCTTCAAGGATGGTGCTGGCTCTGCTCTTCTG
GAGCACCCGTCGAAGCTCGAGAAGATCATTCGTGGCATGAACACTGTTTC
GGATCAGATTCCTATCACGGTCAAGATCCGTATGGGAACGAAGGACAACA
ATCCGAACGCCTTGAAACTGACGGAGCGTTTGCTGCTTGGGGGCTACGAA
ACCAGTCTGCTTCATCACGACGGCGCCGCAGGTGCAGCGGCTATCACTCT
TCACGGCCGTAGCAGACAGCAGCGTTACACCAGACAAGCTGATTGGGAAT
ACATCTCCGAATGTGCCGCCTTGATCAAGCGCCTGAACGAGAAGACTGAC
GCGGTGACGGATACCATCCGGGAGCCTGACGCCCGTACGCAGCCAAACGG
CGGGAAGGTTTACTTCCTGGGTAACGGTGACTGCTACTCTCATGTTGACT
ACGATAACCACATCAACAATGCTGGCGTTGATGCTGTTATGCTTGGTCGC
GGTCCTCTGATCAAGCCTTGGCTGTTCGAGGAAATTCAGGCGGGCCAGTA
CCTTGACAAGTCTGCTACGGAACGTTTGGCAATGATTGAGAAGTTCTGTA
AGTATGGTCTGGAGGCATGGGGATCCGATGAGCACGGTGTTGGTACGACT
AGACGCTTCTTGATGGAATGGCTGAGCTTCACTCGTCGCTATGTACCTAT
CGGGTTGCTCGAGCATCTTCCCCCCTACATCAACGACCGGCCCCCGGCTT
TCAGAGGCCGGAATGAGCTTGAGACACTGCTGGCCAGTGCCAACTACAAG
GATTGGCTCAAGATCTCATGGAGCCGACAACCGCTCAGGAACAGCTGCCC
GCTCCAGAACAGCTGCCCGCTCCAGAGGCTAATGCGCCCAAGCGTGATCC
GGAGAATGGCGATGCCGCTGCAGACCACCAGGCCCAGGAGCCACCCTCGA
AGAAAGCCAGACTCGATGATTCGGCGGATTCTAACGGACAGACGGCTGAT
GCGCCCGCCCCGCGTATGAAGGGCGTTGCTCCTATCAAGCCCGAGGAGAT
GTTCCTCGGACCGGCTCATAAGGACTTCAAGTTCGAGCCCAAGCACAAGT
CCAACTCGTATGACGAAGCGGAGGGTTAAGTTTATTATCGACCAACAACC
CACGAGAGGCCAGACCGCTTCCGATGCCAATGCTGACGATGCTGCGGAAG
CTGCACACCACGACGGGCGCGCCGATGAGCAGAATGGAAAGAAGAAAAAG
AAGAAGACTGGTCAGAATACGAACCGCACGTTTGGTCGATCCGAGGATGC
GAAAGGATTGTGCTCTAGTGTCAACTTCAGGCCTGAATTCTCTCCTGCCG
AGTGCACTTTCGGTGAAAAGTGTCGGTACGAGCATGACCTGCGCACATAC
TTGAAGGAGCATAAGCGGGAAGATCTTACGACGTTCAATGGCATGTGTCC
TGTCTGGGATGTCCACGGAAAGTGCTTCGTGGGCTGGAAATGTCGTTTTG
TCGGTTCACACTCGGAGGAGCGAGAGACTGCCGATGGAAGGAAAGAGTTG
GTTCTTATTGAGGATGAGGAGCGCAAGAAGAAGGTTCAGCGGCTTGTTCC
CTTTGCTGGAGAGGATGGGGCTGTGAATGTTGCTTCGATGGAGGATAAGA
TTGCCTTGGCGAGGAGGAAGATGGACTTCCCAAGAGCTGGGCCGTATAGT
GCTTGGCTGGAAAACACATCCAGGACCATTGAGAAGGAGCTCCACAAACG
GCATCGTGCTGCGCCCGTAGGAGCTGAAACCAAGGATGGAGAGTCTAAGG
ATGCAGAATCTAAGGATGCAGATAGCAAGGACGAAAAGGAGGAGAACCGG
GCTATGTACGTTGAGCCGCCATTCATGCCATCAGAGAAGCGCCGACTGTA
CTTTGGACCCGAAACACCGGCACTGGCGCCTTTGACTACCCAAGGCAATA
TGCCTTTCCGAAGACTTTGTGTCGAGCTTGGCGCACAATTTACCTATTCT
GAGATGGCCATGAGCTTGCCCTTGATCCAGGGTAACAAGTCGGAGTGGGC
CTTAATGCGAGCCCATGAGTCGGAGATGCTCCCTCCCACGATGCTGCCCG
GGGCAGACATCGTGCAGGGCTATGACAACTCCAAGGACATGAAGTTTGGT
GCTCAGATTGCAGCAAACAAGCCCTGGCAGGCGTTCAAGGCTACAGAGGC
GCTGGCTAAAGTTACTCCAAACCTGCGTGTCATCGATCTGAACTGTGGCT
GCCCGATTGACCTCGTCTTCAAGGATGGTGCTGGCTCTGCTCTTCTGGAG
CACCCGTCGAAGCTCGAGAAGATCATTCGTGGCATGAACACTGTTTCGGA
TCAGATTCCTATCACGGTCAAGATCCGTATGGGAACGAAGGACAACAATC
CGAACGCCTTGAAACTGACGGAGCGTTTGCTGCTTGGGGGCTACGAAACC
AGTCTGCTTCATCACGACGGCGCCGCAGGTGCAGCGGCTATCACTCTTCA
CGGCCGTAGCAGACAGCAGCGTTACACCAGACAAGCTGATTGGGAATACA
TCTCCGAATGTGCCGCCTTGATCAAGCGCCTGAACGAGAAGACTGACGCG
GTGACGGATACCATCCGGGAGCCTGACGCCCGTACGCAGCCAAACGGCGG
GAAGGTTTACTTCCTGGGTAACGGTGACTGCTACTCTCATGTTGACTACG
ATAACCACATCAACAATGCTGGCGTTGATGCTGTTATGCTTGGTCGCGGT
CCTCTGATCAAGCCTTGGCTGTTCGAGGAAATTCAGGCGGGCCAGTACCT
TGACAAGTCTGCTACGGAACGTTTGGCAATGATTGAGAAGTTCTGTAAGT
ATGGTCTGGAGGCATGGGGATCCGATGAGCACGGTGTTGGTACGACTAGA
CGCTTCTTGATGGAATGGCTGAGCTTCACTCGTCGCTATGTACCTATCGG
GTTGCTCGAGCATCTTCCCCCCTACATCAACGACCGGCCCCCGGCTTTCA
GAGGCCGGAATGAGCTTGAGACACTGCTGGCCAGTGCCAACTACAAGGAT
TGGCTCAAGATCTCATGGAGCCGACAACCGCTCAGGAACAGCTGCCCGCT
CCAGAACAGCTGCCCGCTCCAGAGGCTAATGCGCCCAAGCGTGATCCGGA
GAATGGCGATGCCGCTGCAGACCACCAGGCCCAGGAGCCACCCTCGAAGA
AAGCCAGACTCGATGATTCGGCGGATTCTAACGGACAGACGGCTGATGCG
CCCGCCCCGCGTATGAAGGGCGTTGCTCCTATCAAGCCCGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046872 | metal ion binding |
| GO:0003824 | catalytic activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0017150 | tRNA dihydrouridine synthase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
| GO:0008033 | tRNA processing |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09261ZPW |
| DBxref | InterPro:IPR035587 |
| DBxref | InterPro:IPR000571 |
| DBxref | InterPro:IPR018517 |
| DBxref | InterPro:IPR013785 |
| DBxref | InterPro:IPR001269 |
| DBxref | PFAM:PF01207 |
| Product | tRNA-dihydrouridine synthase 3 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KZ851922.1 | supercontig | KZ851922.1:556647..559217 - |
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