You are here

Home

M747DRAFT_337015-T1, M747DRAFT_337015-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_337015-T1
Unique NameM747DRAFT_337015-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851900.1:775908..777184-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_337015-T1 ID=M747DRAFT_337015-T1|Name=M747DRAFT_337015-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1277bp|location=Sequence derived from alignment at KZ851900.1:775908..777184- (Aspergillus niger ATCC 13496)
ATGGCTGGATTTGCCGACTTTGACGCCGGTCATCGAGACCTAGTCTCGGT
CACCAAATTCAATTTTTACGGCAATCGCATTGTCACGGCTTCAACTGATC
ACCGCATGAAGGTCTGGGACCAGAAAGACGGTGAATGGCAGCTCGTAGAT
ACTTGGCGTGCCCATGACGCGGAGATCCGTGATGTAAGCACTCCCCACGG
CAGTGGCCCCTTATTTCTTGGTATCTGGTCTGGTATCGTTTGGTTTTAAC
TGTTACTCAGGCGACCTGGAATGGCCCTTTCACGGGCCAGCACATTGGTA
GCGTGGGCGAAGACATGAAATGCAAGATATGGCAGGAGGATGTTACGCAA
CCCCCCAATTCAGGCCGGCGTTTCAGGTCCATCTTTCGCATGACCGCCCC
TCAGCGCCACCCATTTGTATCAATCGATTTTCGCAACATTGATCTGGAAT
CTTGGATGGCCGTTATTACTCGCGACGGCTACCTGATGATCATGGAGCCT
GTAAGTCCCGACACTCTTGCGGACTGGCAGCCGTTAGATCAGTTTAGAGT
CTGCACTGCTCCTCAGCGAGGAGAAGAAACAAGCTTCAAAGTGCAGTTCC
ATCATGATCCTTCGGACATCACGCATTCTGTATTGCCCTCTTCAGATCGC
AAAAGTTTGTCGCTGGTGGTAGCCGCCATGGACAGCGTAAAGATCTATCG
CACTGATGCCAGTCGACGTTTTTACCATGCCATCGAACTGACGGGACATG
GTGGTCTTGTGAGAGACATCTCTTGGGCCAATGGGTCAGTGAGGGGATAT
GACCTCATTGCTAGTGGCTGCAAGGATGGCTTCATCCGGGTTTTCGAGGT
ATATACCACGGCCTCTGGCTCTGGGTCACAAACTTCCAATGGCAACCACG
CACATTCTTCATCGCAGTCATCATCAATTCGTGCGACCACCCAGTCAGGT
ATCGGCTCTGCCCTTGCAAGCCGTGCTCCTGTGTCGATGTCCAGTCGTGC
CGCGCCCGCAGATTCACAGTTCAAGCATTCGTTCAAGGAAATAGCATGCA
TTGACAGCAAGCACCTAGACGTGTGGCAAGTTGGCTTCTCATACGCTGGT
TAGTAGCGGACCCCTTTCGCAGTGAAACGTCTTGAGAATCTGCCTTCGGT
GCTAATCAGTCTCTACACAGGTGACTGCCTTATTTCCTCAGGCGACGATG
GTATTGTACGATTCTGGAAGAAGTCCATCTCTGGAGAATGGCTCGAGTAC
GCTGAAACCGATATGGCTTGCCAATAG
back to top

Coding sequence (CDS) from alignment at KZ851900.1:775908..777184-

>M747DRAFT_337015-T1 ID=M747DRAFT_337015-T1|Name=M747DRAFT_337015-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=3384bp|location=Sequence derived from alignment at KZ851900.1:775908..777184- (Aspergillus niger ATCC 13496)
GTGACTGCCTTATTTCCTCAGGCGACGATGGTATTGTACGATTCTGGAAG
AAGTCCATCTCTGGAGAATGGCTCGAGTACGCTGAAACCGATATGGCTTG
CCAATAGGCGACCTGGAATGGCCCTTTCACGGGCCAGCACATTGGTAGCG
TGGGCGAAGACATGAAATGCAAGATATGGCAGGAGGATGTTACGCAACCC
CCCAATTCAGGCCGGCGTTTCAGGTCCATCTTTCGCATGACCGCCCCTCA
GCGCCACCCATTTGTATCAATCGATTTTCGCAACATTGATCTGGAATCTT
GGATGGCCGTTATTACTCGCGACGGCTACCTGATGATCATGGAGCCTGTA
AGTCCCGACACTCTTGCGGACTGGCAGCCGTTAGATCAGTTTAGAGTCTG
CACTGCTCCTCAGCGAGGAGAAGAAACAAGCTTCAAAGTGCAGTTCCATC
ATGATCCTTCGGACATCACGCATTCTGTATTGCCCTCTTCAGATCGCAAA
AGTTTGTCGCTGGTGGTAGCCGCCATGGACAGCGTAAAGATCTATCGCAC
TGATGCCAGTCGACGTTTTTACCATGCCATCGAACTGACGGGACATGGTG
GTCTTGTGAGAGACATCTCTTGGGCCAATGGGTCAGTGAGGGGATATGAC
CTCATTGCTAGTGGCTGCAAGGATGGCTTCATCCGGGTTTTCGAGGTATA
TACCACGGCCTCTGGCTCTGGGTCACAAACTTCCAATGGCAACCACGCAC
ATTCTTCATCGCAGTCATCATCAATTCGTGCGACCACCCAGTCAGGTATC
GGCTCTGCCCTTGCAAGCCGTGCTCCTGTGTCGATGTCCAGTCGTGCCGC
GCCCGCAGATTCACAGTTCAAGCATTCGTTCAAGGAAATAGCATGCATTG
ACAGCAAGCACCTAGACGTGTGGCAAGTTGGCTTCTCATACGCTGATGGC
TGGATTTGCCGACTTTGACGCCGGTCATCGAGACCTAGTCTCGGTCACCA
AATTCAATTTTTACGGCAATCGCATTGTCACGGCTTCAACTGATCACCGC
ATGAAGGTCTGGGACCAGAAAGACGGTGAATGGCAGCTCGTAGATACTTG
GCGTGCCCATGACGCGGAGATCCGTGATGTGACTGCCTTATTTCCTCAGG
CGACGATGGTATTGTACGATTCTGGAAGAAGTCCATCTCTGGAGAATGGC
TCGAGTACGCTGAAACCGATATGGCTTGCCAATAGGCGACCTGGAATGGC
CCTTTCACGGGCCAGCACATTGGTAGCGTGGGCGAAGACATGAAATGCAA
GATATGGCAGGAGGATGTTACGCAACCCCCCAATTCAGGCCGGCGTTTCA
GGTCCATCTTTCGCATGACCGCCCCTCAGCGCCACCCATTTGTATCAATC
GATTTTCGCAACATTGATCTGGAATCTTGGATGGCCGTTATTACTCGCGA
CGGCTACCTGATGATCATGGAGCCTGTAAGTCCCGACACTCTTGCGGACT
GGCAGCCGTTAGATCAGTTTAGAGTCTGCACTGCTCCTCAGCGAGGAGAA
GAAACAAGCTTCAAAGTGCAGTTCCATCATGATCCTTCGGACATCACGCA
TTCTGTATTGCCCTCTTCAGATCGCAAAAGTTTGTCGCTGGTGGTAGCCG
CCATGGACAGCGTAAAGATCTATCGCACTGATGCCAGTCGACGTTTTTAC
CATGCCATCGAACTGACGGGACATGGTGGTCTTGTGAGAGACATCTCTTG
GGCCAATGGGTCAGTGAGGGGATATGACCTCATTGCTAGTGGCTGCAAGG
ATGGCTTCATCCGGGTTTTCGAGGTATATACCACGGCCTCTGGCTCTGGG
TCACAAACTTCCAATGGCAACCACGCACATTCTTCATCGCAGTCATCATC
AATTCGTGCGACCACCCAGTCAGGTATCGGCTCTGCCCTTGCAAGCCGTG
CTCCTGTGTCGATGTCCAGTCGTGCCGCGCCCGCAGATTCACAGTTCAAG
CATTCGTTCAAGGAAATAGCATGCATTGACAGCAAGCACCTAGACGTGTG
GCAAGTTGGCTTCTCATACGCTGATGGCTGGATTTGCCGACTTTGACGCC
GGTCATCGAGACCTAGTCTCGGTCACCAAATTCAATTTTTACGGCAATCG
CATTGTCACGGCTTCAACTGATCACCGCATGAAGGTCTGGGACCAGAAAG
ACGGTGAATGGCAGCTCGTAGATACTTGGCGTGCCCATGACGCGGAGATC
CGTGATGTGACTGCCTTATTTCCTCAGGCGACGATGGTATTGTACGATTC
TGGAAGAAGTCCATCTCTGGAGAATGGCTCGAGTACGCTGAAACCGATAT
GGCTTGCCAATAGGCGACCTGGAATGGCCCTTTCACGGGCCAGCACATTG
GTAGCGTGGGCGAAGACATGAAATGCAAGATATGGCAGGAGGATGTTACG
CAACCCCCCAATTCAGGCCGGCGTTTCAGGTCCATCTTTCGCATGACCGC
CCCTCAGCGCCACCCATTTGTATCAATCGATTTTCGCAACATTGATCTGG
AATCTTGGATGGCCGTTATTACTCGCGACGGCTACCTGATGATCATGGAG
CCTGTAAGTCCCGACACTCTTGCGGACTGGCAGCCGTTAGATCAGTTTAG
AGTCTGCACTGCTCCTCAGCGAGGAGAAGAAACAAGCTTCAAAGTGCAGT
TCCATCATGATCCTTCGGACATCACGCATTCTGTATTGCCCTCTTCAGAT
CGCAAAAGTTTGTCGCTGGTGGTAGCCGCCATGGACAGCGTAAAGATCTA
TCGCACTGATGCCAGTCGACGTTTTTACCATGCCATCGAACTGACGGGAC
ATGGTGGTCTTGTGAGAGACATCTCTTGGGCCAATGGGTCAGTGAGGGGA
TATGACCTCATTGCTAGTGGCTGCAAGGATGGCTTCATCCGGGTTTTCGA
GGTATATACCACGGCCTCTGGCTCTGGGTCACAAACTTCCAATGGCAACC
ACGCACATTCTTCATCGCAGTCATCATCAATTCGTGCGACCACCCAGTCA
GGTATCGGCTCTGCCCTTGCAAGCCGTGCTCCTGTGTCGATGTCCAGTCG
TGCCGCGCCCGCAGATTCACAGTTCAAGCATTCGTTCAAGGAAATAGCAT
GCATTGACAGCAAGCACCTAGACGTGTGGCAAGTTGGCTTCTCATACGCT
GATGGCTGGATTTGCCGACTTTGACGCCGGTCATCGAGACCTAGTCTCGG
TCACCAAATTCAATTTTTACGGCAATCGCATTGTCACGGCTTCAACTGAT
CACCGCATGAAGGTCTGGGACCAGAAAGACGGTGAATGGCAGCTCGTAGA
TACTTGGCGTGCCCATGACGCGGAGATCCGTGAT
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
M747DRAFT_337015M747DRAFT_337015Aspergillus niger ATCC 13496gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_337015-T1M747DRAFT_337015-T1-proteinAspergillus niger ATCC 13496polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_337015-T1.cdsM747DRAFT_337015-T1.cdsAspergillus niger ATCC 13496CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_337015-T1.exon3M747DRAFT_337015-T1.exon3Aspergillus niger ATCC 13496exon
M747DRAFT_337015-T1.exon2M747DRAFT_337015-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_337015-T1.exon1M747DRAFT_337015-T1.exon1Aspergillus niger ATCC 13496exon


Properties
Property NameValue
DBxrefInterPro:IPR036322
DBxrefInterPro:IPR017986
DBxrefInterPro:IPR001680
DBxrefPFAM:PF00400
Productnuclear pore protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851900.1supercontigKZ851900.1:775908..777184 -
Powered by Drupal