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M747DRAFT_366969-T1, M747DRAFT_366969-T1 (mRNA) Aspergillus niger ATCC 13496

Overview
NameM747DRAFT_366969-T1
Unique NameM747DRAFT_366969-T1
TypemRNA
OrganismAspergillus niger ATCC 13496
Sequences
The following sequences are available for this feature:

mRNA from alignment at KZ851901.1:755386..757341-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>M747DRAFT_366969-T1 ID=M747DRAFT_366969-T1|Name=M747DRAFT_366969-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1956bp|location=Sequence derived from alignment at KZ851901.1:755386..757341- (Aspergillus niger ATCC 13496)
CGAGCGCAGCTTCTTCACATGTTCAAGCCTGCAGCTTGTCAAGCAAAGCT
CCTTCAAACTTGATACCCGCAGCCACACAACCACCCCGCAGAAACGAAGC
TTTCGAACTACAGCCGCACCGCATACTTCTCCGAGCTCACCTCCACACGA
CAATGTATACACCTTAGATACCAACCAACAGCTTCAGATCTGCTCTTCCA
TACCTCAGTCTCCCACACCGAACAAATACACACATACACAAGATGAATAC
CATCGACGCAACAGAACACTACGAAACCAGCGCCCACGGTACGTCCACCA
ACCACATACATCCATCACAATCTCATCCCCCTCCCAATTCCAACTTCTAC
CCTACAAACTAACAAGACGAAATATAGACCGGCCCCCCTCCCTCCTAACC
ATCATCCTCGACACCAACCCACACGCCTGGGCACTCCTCAACCCCTCCCT
TCCCCTCTCCACCGCCATCGCCAACATCCTCGTCTTCATCAACGCCCACC
TAGCATGCAACTACGCGAACGAAGTAGCCGTGGTATCCTCACACACCTCT
CAAGCAACATGGCTCTACCCCGTCGAAAAAGCCACCACCACCACCACCGC
CAATAACCTAGACTCCGACGGCGACATCTCCATGCGCTCCCAACAACCAC
CTCCATCTACTCACACCAACATAAACAAATACCGCCCCTTCCGCATCGTC
GAAGAACAAGTCTCCACGCACCTCCACAACCTAATGTCCCAAACCACCCC
AGAAACCCTCCAATCCACCACCTCAACTATGATGGCCGGCGCGCTTACCC
TAGCACTAAGCCACATCAACCGCCGCACGTTAGCATGGAATGAAGCGCAC
GGGGGAGATATCGACACGACAAACCCCAATGACCCTTCTTCAACATCCTC
CTCATCACATAATACAAAGGGTACTGCGGAATCAACCCTCCAATCACGCA
TCCTCATTCTCTCTGTGTCAAGTTCCACCGGTTCAGCGCATCAATATATC
CCCATCATGAATGCTATATTCGCTTGCCAGAGGCTGCATATTCCGATTGA
TGTATGTAAGGTGTCTGGCGATGCGGTATTCCTGCAGCAGGCGTCGGATG
CGACCAAGGGGGTGTATATGGCGTTGGATGAGCCGAAGGGACTATTGCAG
TACTTGATGATGGCGTTTTTGCCGGATCAGAGGAGTAGACGCCATTTGGT
GCTGCCTACAAGAGTGGATGTGGATTTTCGGGCGGCGTGCTTTTGTCATC
GGAGGGTTGTGGATGTGGGGTTTGTGTGTTCGATTTGTCTGAGTATCTTC
TGTGAGCCGTTGGGGGATGGGGTGTGTTTGACTTGTGGGAGTCGGTTGGA
TGTTAGTGATTATGGGGCTAAGCCGGCGGTGGTGGCTAGAAAGAAGAAGA
AGAAGAAGGTTAAGGGGAATGGGATGTCTGCGGCGGGGACGCCTACGCCT
ACACCGACGCCGGGGCCGTGAGTGTCTTTGTGGGCATGGGATTGACTACG
TGGTGAAAAGAAAGTTGCCTATGTACTGGCTACGGGATAGAATGGCCGAG
GATTGCCATTGAATGCTTGTTCATTCGGTATCTTCGGCTCGAATTAGCAA
ATGGTTACTCGCCCCTGCATCCATACTCAGGACCCGTGCGGCATCGCTTT
AATCTGGATGTACGCTGACACTTGACAACCAAACGGACGGGGCGTGGCCG
GCACGGCACTCGATCATTCTGTCGGCGAACGTCATCGACCCGGAAACAAG
CGCTGTAACGCTGTCGGACGCCAAGATGCACATAGTACAGAAGACGCAGG
ATAGGCTTTATTTAGCTGGTTTTGGGGCCCTGGGTCTGATGTTGTCAGCT
TAGCTTGATCTGTACAGTAGCTGTTATCGAATACCTTTTGGCTCTGCAGG
CGCGGCCACCCTGGGCAATGGTACCGCCCCCGCCATTGCGAGACATGACA
CACACG
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Coding sequence (CDS) from alignment at KZ851901.1:755386..757341-

>M747DRAFT_366969-T1 ID=M747DRAFT_366969-T1|Name=M747DRAFT_366969-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=2280bp|location=Sequence derived from alignment at KZ851901.1:755386..757341- (Aspergillus niger ATCC 13496)
ACCGGCCCCCCTCCCTCCTAACCATCATCCTCGACACCAACCCACACGCC
TGGGCACTCCTCAACCCCTCCCTTCCCCTCTCCACCGCCATCGCCAACAT
CCTCGTCTTCATCAACGCCCACCTAGCATGCAACTACGCGAACGAAGTAG
CCGTGGTATCCTCACACACCTCTCAAGCAACATGGCTCTACCCCGTCGAA
AAAGCCACCACCACCACCACCGCCAATAACCTAGACTCCGACGGCGACAT
CTCCATGCGCTCCCAACAACCACCTCCATCTACTCACACCAACATAAACA
AATACCGCCCCTTCCGCATCGTCGAAGAACAAGTCTCCACGCACCTCCAC
AACCTAATGTCCCAAACCACCCCAGAAACCCTCCAATCCACCACCTCAAC
TATGATGGCCGGCGCGCTTACCCTAGCACTAAGCCACATCAACCGCCGCA
CGTTAGCATGGAATGAAGCGCACGGGGGAGATATCGACACGACAAACCCC
AATGACCCTTCTTCAACATCCTCCTCATCACATAATACAAAGGGTACTGC
GGAATCAACCCTCCAATCACGCATCCTCATTCTCTCTGTGTCAAGTTCCA
CCGGTTCAGCGCATCAATATATCCCCATCATGAATGCTATATTCGCTTGC
CAGAGGCTGCATATTCCGATTGATGTATGTAAGGTGTCTGGCGATGCGGT
ATTCCTGCAGCAGGCGTCGGATGCGACCAAGGGGGTGTATATGGCGTTGG
ATGAGCCGAAGGGACTATTGCAGTACTTGATGATGGCGTTTTTGCCGGAT
CAGAGGAGTAGACGCCATTTGGTGCTGCCTACAAGAGTGGATGTGGATTT
TCGGGCGGCGTGCTTTTGTCATCGGAGGGTTGTGGATGTGGGGTTTGTGT
GTTCGATTTGTCTGAGTATCTTCTGTGAGCCGTTGGGGGATGGGGTGTGT
TTGACTTGTGGGAGTCGGTTGGATGTTAGTGATTATGGGGCTAAGCCGGC
GGTGGTGGCTAGAAAGAAGAAGAAGAAGAAGGTTAAGGGGAATGGGATGT
CTGCGGCGGGGACGCCTACGCCTACACCGACGCCGGGGCCGTGAATGAAT
ACCATCGACGCAACAGAACACTACGAAACCAGCGCCCACGACCGGCCCCC
CTCCCTCCTAACCATCATCCTCGACACCAACCCACACGCCTGGGCACTCC
TCAACCCCTCCCTTCCCCTCTCCACCGCCATCGCCAACATCCTCGTCTTC
ATCAACGCCCACCTAGCATGCAACTACGCGAACGAAGTAGCCGTGGTATC
CTCACACACCTCTCAAGCAACATGGCTCTACCCCGTCGAAAAAGCCACCA
CCACCACCACCGCCAATAACCTAGACTCCGACGGCGACATCTCCATGCGC
TCCCAACAACCACCTCCATCTACTCACACCAACATAAACAAATACCGCCC
CTTCCGCATCGTCGAAGAACAAGTCTCCACGCACCTCCACAACCTAATGT
CCCAAACCACCCCAGAAACCCTCCAATCCACCACCTCAACTATGATGGCC
GGCGCGCTTACCCTAGCACTAAGCCACATCAACCGCCGCACGTTAGCATG
GAATGAAGCGCACGGGGGAGATATCGACACGACAAACCCCAATGACCCTT
CTTCAACATCCTCCTCATCACATAATACAAAGGGTACTGCGGAATCAACC
CTCCAATCACGCATCCTCATTCTCTCTGTGTCAAGTTCCACCGGTTCAGC
GCATCAATATATCCCCATCATGAATGCTATATTCGCTTGCCAGAGGCTGC
ATATTCCGATTGATGTATGTAAGGTGTCTGGCGATGCGGTATTCCTGCAG
CAGGCGTCGGATGCGACCAAGGGGGTGTATATGGCGTTGGATGAGCCGAA
GGGACTATTGCAGTACTTGATGATGGCGTTTTTGCCGGATCAGAGGAGTA
GACGCCATTTGGTGCTGCCTACAAGAGTGGATGTGGATTTTCGGGCGGCG
TGCTTTTGTCATCGGAGGGTTGTGGATGTGGGGTTTGTGTGTTCGATTTG
TCTGAGTATCTTCTGTGAGCCGTTGGGGGATGGGGTGTGTTTGACTTGTG
GGAGTCGGTTGGATGTTAGTGATTATGGGGCTAAGCCGGCGGTGGTGGCT
AGAAAGAAGAAGAAGAAGAAGGTTAAGGGGAATGGGATGTCTGCGGCGGG
GACGCCTACGCCTACACCGACGCCGGGGCCGTGAATGAATACCATCGACG
CAACAGAACACTACGAAACCAGCGCCCACG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0000439transcription factor TFIIH core complex
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006289nucleotide-excision repair
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
M747DRAFT_366969M747DRAFT_366969Aspergillus niger ATCC 13496gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_366969-T1M747DRAFT_366969-T1-proteinAspergillus niger ATCC 13496polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_366969-T1.cdsM747DRAFT_366969-T1.cdsAspergillus niger ATCC 13496CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_366969-T1.utr3p1M747DRAFT_366969-T1.utr3p1Aspergillus niger ATCC 13496three_prime_UTR


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_366969-T1.exon2M747DRAFT_366969-T1.exon2Aspergillus niger ATCC 13496exon
M747DRAFT_366969-T1.exon1M747DRAFT_366969-T1.exon1Aspergillus niger ATCC 13496exon


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
M747DRAFT_366969-T1.utr5p1M747DRAFT_366969-T1.utr5p1Aspergillus niger ATCC 13496five_prime_UTR


Properties
Property NameValue
NoteBUSCO:EOG0926369X
DBxrefInterPro:IPR036465
DBxrefInterPro:IPR004600
DBxrefPFAM:PF03850
Producttranscription factor TFIIH complex subunit
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger ATCC 13496 whole genome analysis2021-10-31
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KZ851901.1supercontigKZ851901.1:755386..757341 -
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