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Sequences
The following sequences are available for this feature:
mRNA from alignment at KZ851942.1:218017..219422+ Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >M747DRAFT_373799-T1 ID=M747DRAFT_373799-T1|Name=M747DRAFT_373799-T1|organism=Aspergillus niger ATCC 13496|type=mRNA|length=1406bp|location=Sequence derived from alignment at KZ851942.1:218017..219422+ (Aspergillus niger ATCC 13496)
CGTTATTTCATTGAATTGACTCTATACACTTTCTTGAGGCTATTCTGGAG
CGAGTATTGATTTGAAGGGGTAAGAATCCACGCCATCCTATTCCATTTTG
CGACAGAAACTGTCAACATCGAACACCATGCCGGAGCTAGCGGAAGTCTC
GCGTATAGTCCATTTCCTTCGTCAACATCTTGTCGGCAAAACGCTTTCCA
AGGTGTCAGTGCAAAACGATGACATTATCTACGGCAAAGCCGGTACTACT
GCTGCCGAGTTTCAGAAGGCAATGGAGGGGAAGAAAGTTACTGGTGCCGG
ACAGCAGGGCAAGTACTTCTGGATTGCTATGTCATCACCACCCCATGCGG
TTATGCATTTCGGTATGGCGGGCTGGCTGAAAATCCGGGATGCCGACACC
TATTACTACCGGACAGACAAACCTGGAGATAAGGAGTGGCCGCCAAAATA
CTGGAAATTCTTGCTCGAAACCGAGGGAGATCCAAAGACAGAAGCTGCTT
TTGTTGACTTTCGCCGACTGGGCAGAATACGCCTGGTAGACTGTCCCGCG
GAGGAAATCCGTAACTACAGCCCTCTGAAAGAGAATGGCCCAGATCCTGT
CGCCGATAAAGACATTGTGTCGGAGGAGTGGCTGGCAAAGAAGCTCCGAA
GCAAGAAGGTACCTGTGAAGGCGCTGCTCCTTGATCAAGCGAATATCAGC
GGAATAGGCAACTGGATGGGGTATGCTCCTTCAGTCTCCCACCATGACTG
ATTACATCTAGCTGACTGATTTCTAGCGATGAGATCCTCTACCAAGCTAA
AATACACCCTGAGCAATACAGCAACACTTTGGATGACGACCAGATTAGAG
AGCTGCACTCAGCGATACATTATATCTGTTCCACCTCCGTAGAGCTTCTA
GCAGATTCGGAGAAATTTCCAGCTGACTGGCTGTTCAAACATCGGTGGAG
TAAAGGCAAGAAGAACACGCCATCAGTGCTGCCAAACGGAGAAAAGATTA
CCTTTCTCACGGTAGGGGGCAGGACCAGCGCAGTGGTTCCGAGTGTGCAG
AAAAAAACTGGGCCAGTAGCCAAGGACGTCAGCAGTGAAGACGCCAGCAA
TGCGCCGGCAAACTCGAAGCGAAAGCGGGCTTCAGTGAAAAAGGAGGAGA
GCGAGCCGGAAGCTAGCGAAGAGGATACGAAGCCCAAGAAGACCGGGCCC
AAAAGGCAAAGCAGAACTTCTGTCAAGAAGGAAGACATCGATGAGACAGA
GACTAAGCCGATAGAAGAACAGCAAACTACCAGGAGACGCTCGGACCGAC
TTCGAAAGTAGGGGATTCCGACTGTTGTATTATTGTGGCCATCTTAGCGA
CGTATTAGAAGATGCGACCTTCCGCTCATTATTATACTGATTCTTTATCT
AATATT back to topCoding sequence (CDS) from alignment at KZ851942.1:218017..219422+ >M747DRAFT_373799-T1 ID=M747DRAFT_373799-T1|Name=M747DRAFT_373799-T1|organism=Aspergillus niger ATCC 13496|type=CDS|length=2256bp|location=Sequence derived from alignment at KZ851942.1:218017..219422+ (Aspergillus niger ATCC 13496)
ATGCCGGAGCTAGCGGAAGTCTCGCGTATAGTCCATTTCCTTCGTCAACA
TCTTGTCGGCAAAACGCTTTCCAAGGTGTCAGTGCAAAACGATGACATTA
TCTACGGCAAAGCCGGTACTACTGCTGCCGAGTTTCAGAAGGCAATGGAG
GGGAAGAAAGTTACTGGTGCCGGACAGCAGGGCAAGTACTTCTGGATTGC
TATGTCATCACCACCCCATGCGGTTATGCATTTCGGTATGGCGGGCTGGC
TGAAAATCCGGGATGCCGACACCTATTACTACCGGACAGACAAACCTGGA
GATAAGGAGTGGCCGCCAAAATACTGGAAATTCTTGCTCGAAACCGAGGG
AGATCCAAAGACAGAAGCTGCTTTTGTTGACTTTCGCCGACTGGGCAGAA
TACGCCTGGTAGACTGTCCCGCGGAGGAAATCCGTAACTACAGCCCTCTG
AAAGAGAATGGCCCAGATCCTGTCGCCGATAAAGACATTGTGTCGGAGGA
GTGGCTGGCAAAGAAGCTCCGAAGCAAGAAGGTACCTGTGAAGGCGCTGC
TCCTTGATCAAGCGAATATCAGCGGAATAGGCAACTGGATGGGCGATGAG
ATCCTCTACCAAGCTAAAATACACCCTGAGCAATACAGCAACACTTTGGA
TGACGACCAGATTAGAGAGCTGCACTCAGCGATACATTATATCTGTTCCA
CCTCCGTAGAGCTTCTAGCAGATTCGGAGAAATTTCCAGCTGACTGGCTG
TTCAAACATCGGTGGAGTAAAGGCAAGAAGAACACGCCATCAGTGCTGCC
AAACGGAGAAAAGATTACCTTTCTCACGGTAGGGGGCAGGACCAGCGCAG
TGGTTCCGAGTGTGCAGAAAAAAACTGGGCCAGTAGCCAAGGACGTCAGC
AGTGAAGACGCCAGCAATGCGCCGGCAAACTCGAAGCGAAAGCGGGCTTC
AGTGAAAAAGGAGGAGAGCGAGCCGGAAGCTAGCGAAGAGGATACGAAGC
CCAAGAAGACCGGGCCCAAAAGGCAAAGCAGAACTTCTGTCAAGAAGGAA
GACATCGATGAGACAGAGACTAAGCCGATAGAAGAACAGCAAACTACCAG
GAGACGCTCGGACCGACTTCGAAAGTAGATGCCGGAGCTAGCGGAAGTCT
CGCGTATAGTCCATTTCCTTCGTCAACATCTTGTCGGCAAAACGCTTTCC
AAGGTGTCAGTGCAAAACGATGACATTATCTACGGCAAAGCCGGTACTAC
TGCTGCCGAGTTTCAGAAGGCAATGGAGGGGAAGAAAGTTACTGGTGCCG
GACAGCAGGGCAAGTACTTCTGGATTGCTATGTCATCACCACCCCATGCG
GTTATGCATTTCGGTATGGCGGGCTGGCTGAAAATCCGGGATGCCGACAC
CTATTACTACCGGACAGACAAACCTGGAGATAAGGAGTGGCCGCCAAAAT
ACTGGAAATTCTTGCTCGAAACCGAGGGAGATCCAAAGACAGAAGCTGCT
TTTGTTGACTTTCGCCGACTGGGCAGAATACGCCTGGTAGACTGTCCCGC
GGAGGAAATCCGTAACTACAGCCCTCTGAAAGAGAATGGCCCAGATCCTG
TCGCCGATAAAGACATTGTGTCGGAGGAGTGGCTGGCAAAGAAGCTCCGA
AGCAAGAAGGTACCTGTGAAGGCGCTGCTCCTTGATCAAGCGAATATCAG
CGGAATAGGCAACTGGATGGGCGATGAGATCCTCTACCAAGCTAAAATAC
ACCCTGAGCAATACAGCAACACTTTGGATGACGACCAGATTAGAGAGCTG
CACTCAGCGATACATTATATCTGTTCCACCTCCGTAGAGCTTCTAGCAGA
TTCGGAGAAATTTCCAGCTGACTGGCTGTTCAAACATCGGTGGAGTAAAG
GCAAGAAGAACACGCCATCAGTGCTGCCAAACGGAGAAAAGATTACCTTT
CTCACGGTAGGGGGCAGGACCAGCGCAGTGGTTCCGAGTGTGCAGAAAAA
AACTGGGCCAGTAGCCAAGGACGTCAGCAGTGAAGACGCCAGCAATGCGC
CGGCAAACTCGAAGCGAAAGCGGGCTTCAGTGAAAAAGGAGGAGAGCGAG
CCGGAAGCTAGCGAAGAGGATACGAAGCCCAAGAAGACCGGGCCCAAAAG
GCAAAGCAGAACTTCTGTCAAGAAGGAAGACATCGATGAGACAGAGACTA
AGCCGATAGAAGAACAGCAAACTACCAGGAGACGCTCGGACCGACTTCGA
AAGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006289 | nucleotide-excision repair |
| GO:0006284 | base-excision repair |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0003684 | damaged DNA binding |
| GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds |
| GO:0003906 | DNA-(apurinic or apyrimidinic site) endonuclease activity |
| GO:0008270 | zinc ion binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR010979 |
| DBxref | InterPro:IPR035937 |
| DBxref | InterPro:IPR015886 |
| DBxref | InterPro:IPR012319 |
| DBxref | PFAM:PF06831 |
| DBxref | PFAM:PF01149 |
| Product | formamidopyrimidine-DNA glycosylase |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| KZ851942.1 | supercontig | KZ851942.1:218017..219422 + |
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