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CBS51388_000921-T1, CBS51388_000921-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_000921-T1
Unique NameCBS51388_000921-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An01:2707839..2709059+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_000921-T1 ID=CBS51388_000921-T1|Name=CBS51388_000921-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1221bp|location=Sequence derived from alignment at An01:2707839..2709059+ (Aspergillus niger CBS 513.88)
ATGCACTCTTACCAGCTTCTTGGCCTGGCCGCTGTCGGCTCCCTCGTCTC
TGCCGCCCCCGCTCCTTCTCGCGTCTCCGAGTTCGCTAAGAAGGCCTCTA
CCTGCACCTTCACCTCTGCCTCTGAGGCCAGCGAGAGCATCTCCAGCTGC
TCCGATGTTGTCCTGAGCAGCATCGAGGTCCCCGCTGGCGAGACCCTGGA
CCTGTCCGATGCTGCTGATGGCTCCACCGTATGTGCTCTCAACCGTCTTC
CACCCTGGCTATCACGCTAACACCATCTAGATCACCTTCGAGGGCACCAC
TTCCTTCGGATACAAGGAATGGAAGGGTCCCCTGATCCGCTTCGGTGGTA
AGGATCTGACCGTCACCATGGCCGACGGCGCTGTCATCGACGGTGACGGT
TCCCGCTGGTGGGACAGCAAGGGTACCAACGGTGGCAAGACCAAGCCCAA
GTTCATGTACATCCACGACGTTGAGGACTCGACCTTCAAGGGCATCAACA
TCAAGAATACTCCCGTCCAGGCCATCAGTGTCCAGGCTACCAACGTCCAC
CTGAACGACTTCACCATCGACAACTCCGACGGTGATGACAACGGTGGCCA
CAACACCGACGGTTTCGACATCAGCGAGTCCACCGGTGTCTACATCAGCG
GTGCTACCGTCAAGAACCAGGACGACTGCATTGCCATCAACTCTGGCGAG
GTACGATATCCCTATCCCACTATCATTCCTTCCATTCATATCGCTAACAA
TCAAACCCACAGAGCATCTCTTTCACCGGCGGTACCTGCTCCGGTGGCCA
CGGTCTCTCCATCGGCTCTGTCGGTGGCCGTGATGACAACACCGTCAAGA
ACGTGACCATCTCCGACTCCACTGTCAGCAACTCCGCCAATGGTGTCCGC
ATCAAGACCATCTACAAGGAGACCGGCGATGTCAGCGAGATCACCTACTC
CAACATCCAGCTCTCCGGCATCACCGACTACGGTATCGTCATCGAGCAGG
ACTACGAGAACGGCTCTCCCACCGGCACCCCCTCCACCGGTATCCCCATC
ACTGATGTCACTGTTGACGGTGTCACCGGCACTCTTGAGGATGACGCCAC
CCAGGTCTACATTCTCTGCGGTGACGGCTCTTGCTCTGACTGGACCTGGT
CCGGTGTTGACCTCTCTGGTGGCAAGACCAGCGATAAATGCGAGAACGTT
CCTTCCGGTGCTTCTTGCTAA
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Coding sequence (CDS) from alignment at An01:2707839..2709059+

>CBS51388_000921-T1 ID=CBS51388_000921-T1|Name=CBS51388_000921-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=3321bp|location=Sequence derived from alignment at An01:2707839..2709059+ (Aspergillus niger CBS 513.88)
ATGCACTCTTACCAGCTTCTTGGCCTGGCCGCTGTCGGCTCCCTCGTCTC
TGCCGCCCCCGCTCCTTCTCGCGTCTCCGAGTTCGCTAAGAAGGCCTCTA
CCTGCACCTTCACCTCTGCCTCTGAGGCCAGCGAGAGCATCTCCAGCTGC
TCCGATGTTGTCCTGAGCAGCATCGAGGTCCCCGCTGGCGAGACCCTGGA
CCTGTCCGATGCTGCTGATGGCTCCACCATCACCTTCGAGGGCACCACTT
CCTTCGGATACAAGGAATGGAAGGGTCCCCTGATCCGCTTCGGTGGTAAG
GATCTGACCGTCACCATGGCCGACGGCGCTGTCATCGACGGTGACGGTTC
CCGCTGGTGGGACAGCAAGGGTACCAACGGTGGCAAGACCAAGCCCAAGT
TCATGTACATCCACGACGTTGAGGACTCGACCTTCAAGGGCATCAACATC
AAGAATACTCCCGTCCAGGCCATCAGTGTCCAGGCTACCAACGTCCACCT
GAACGACTTCACCATCGACAACTCCGACGGTGATGACAACGGTGGCCACA
ACACCGACGGTTTCGACATCAGCGAGTCCACCGGTGTCTACATCAGCGGT
GCTACCGTCAAGAACCAGGACGACTGCATTGCCATCAACTCTGGCGAGAG
CATCTCTTTCACCGGCGGTACCTGCTCCGGTGGCCACGGTCTCTCCATCG
GCTCTGTCGGTGGCCGTGATGACAACACCGTCAAGAACGTGACCATCTCC
GACTCCACTGTCAGCAACTCCGCCAATGGTGTCCGCATCAAGACCATCTA
CAAGGAGACCGGCGATGTCAGCGAGATCACCTACTCCAACATCCAGCTCT
CCGGCATCACCGACTACGGTATCGTCATCGAGCAGGACTACGAGAACGGC
TCTCCCACCGGCACCCCCTCCACCGGTATCCCCATCACTGATGTCACTGT
TGACGGTGTCACCGGCACTCTTGAGGATGACGCCACCCAGGTCTACATTC
TCTGCGGTGACGGCTCTTGCTCTGACTGGACCTGGTCCGGTGTTGACCTC
TCTGGTGGCAAGACCAGCGATAAATGCGAGAACGTTCCTTCCGGTGCTTC
TTGCTAAATGCACTCTTACCAGCTTCTTGGCCTGGCCGCTGTCGGCTCCC
TCGTCTCTGCCGCCCCCGCTCCTTCTCGCGTCTCCGAGTTCGCTAAGAAG
GCCTCTACCTGCACCTTCACCTCTGCCTCTGAGGCCAGCGAGAGCATCTC
CAGCTGCTCCGATGTTGTCCTGAGCAGCATCGAGGTCCCCGCTGGCGAGA
CCCTGGACCTGTCCGATGCTGCTGATGGCTCCACCATCACCTTCGAGGGC
ACCACTTCCTTCGGATACAAGGAATGGAAGGGTCCCCTGATCCGCTTCGG
TGGTAAGGATCTGACCGTCACCATGGCCGACGGCGCTGTCATCGACGGTG
ACGGTTCCCGCTGGTGGGACAGCAAGGGTACCAACGGTGGCAAGACCAAG
CCCAAGTTCATGTACATCCACGACGTTGAGGACTCGACCTTCAAGGGCAT
CAACATCAAGAATACTCCCGTCCAGGCCATCAGTGTCCAGGCTACCAACG
TCCACCTGAACGACTTCACCATCGACAACTCCGACGGTGATGACAACGGT
GGCCACAACACCGACGGTTTCGACATCAGCGAGTCCACCGGTGTCTACAT
CAGCGGTGCTACCGTCAAGAACCAGGACGACTGCATTGCCATCAACTCTG
GCGAGAGCATCTCTTTCACCGGCGGTACCTGCTCCGGTGGCCACGGTCTC
TCCATCGGCTCTGTCGGTGGCCGTGATGACAACACCGTCAAGAACGTGAC
CATCTCCGACTCCACTGTCAGCAACTCCGCCAATGGTGTCCGCATCAAGA
CCATCTACAAGGAGACCGGCGATGTCAGCGAGATCACCTACTCCAACATC
CAGCTCTCCGGCATCACCGACTACGGTATCGTCATCGAGCAGGACTACGA
GAACGGCTCTCCCACCGGCACCCCCTCCACCGGTATCCCCATCACTGATG
TCACTGTTGACGGTGTCACCGGCACTCTTGAGGATGACGCCACCCAGGTC
TACATTCTCTGCGGTGACGGCTCTTGCTCTGACTGGACCTGGTCCGGTGT
TGACCTCTCTGGTGGCAAGACCAGCGATAAATGCGAGAACGTTCCTTCCG
GTGCTTCTTGCTAAATGCACTCTTACCAGCTTCTTGGCCTGGCCGCTGTC
GGCTCCCTCGTCTCTGCCGCCCCCGCTCCTTCTCGCGTCTCCGAGTTCGC
TAAGAAGGCCTCTACCTGCACCTTCACCTCTGCCTCTGAGGCCAGCGAGA
GCATCTCCAGCTGCTCCGATGTTGTCCTGAGCAGCATCGAGGTCCCCGCT
GGCGAGACCCTGGACCTGTCCGATGCTGCTGATGGCTCCACCATCACCTT
CGAGGGCACCACTTCCTTCGGATACAAGGAATGGAAGGGTCCCCTGATCC
GCTTCGGTGGTAAGGATCTGACCGTCACCATGGCCGACGGCGCTGTCATC
GACGGTGACGGTTCCCGCTGGTGGGACAGCAAGGGTACCAACGGTGGCAA
GACCAAGCCCAAGTTCATGTACATCCACGACGTTGAGGACTCGACCTTCA
AGGGCATCAACATCAAGAATACTCCCGTCCAGGCCATCAGTGTCCAGGCT
ACCAACGTCCACCTGAACGACTTCACCATCGACAACTCCGACGGTGATGA
CAACGGTGGCCACAACACCGACGGTTTCGACATCAGCGAGTCCACCGGTG
TCTACATCAGCGGTGCTACCGTCAAGAACCAGGACGACTGCATTGCCATC
AACTCTGGCGAGAGCATCTCTTTCACCGGCGGTACCTGCTCCGGTGGCCA
CGGTCTCTCCATCGGCTCTGTCGGTGGCCGTGATGACAACACCGTCAAGA
ACGTGACCATCTCCGACTCCACTGTCAGCAACTCCGCCAATGGTGTCCGC
ATCAAGACCATCTACAAGGAGACCGGCGATGTCAGCGAGATCACCTACTC
CAACATCCAGCTCTCCGGCATCACCGACTACGGTATCGTCATCGAGCAGG
ACTACGAGAACGGCTCTCCCACCGGCACCCCCTCCACCGGTATCCCCATC
ACTGATGTCACTGTTGACGGTGTCACCGGCACTCTTGAGGATGACGCCAC
CCAGGTCTACATTCTCTGCGGTGACGGCTCTTGCTCTGACTGGACCTGGT
CCGGTGTTGACCTCTCTGGTGGCAAGACCAGCGATAAATGCGAGAACGTT
CCTTCCGGTGCTTCTTGCTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_000921CBS51388_000921Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_000921-T1.exon1CBS51388_000921-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_000921-T1.exon2CBS51388_000921-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_000921-T1.exon3CBS51388_000921-T1.exon3Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_000921-T1.cdsCBS51388_000921-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_000921-T1CBS51388_000921-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
NoteSECRETED:SignalP(1-18)
NoteCAZy:GH28
DBxrefInterPro:IPR011050
DBxrefInterPro:IPR012334
DBxrefInterPro:IPR000743
DBxrefInterPro:IPR006626
DBxrefPFAM:PF00295
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An01supercontigAn01:2707839..2709059 +
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