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CBS51388_002067-T1, CBS51388_002067-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_002067-T1
Unique NameCBS51388_002067-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An02:2616084..2617244+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_002067-T1 ID=CBS51388_002067-T1|Name=CBS51388_002067-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1161bp|location=Sequence derived from alignment at An02:2616084..2617244+ (Aspergillus niger CBS 513.88)
ATGCTTTCGTTTGTCTTGCTTCTTTGTGTAGCGTTGGTCAACGCCTACTC
AGACCCGGGTGCATGCTCGGGAACCTGCTGGGCACACGACCCCAATGTCA
TTCGCCGTGTGTCGGATGGAACCTACTTTCGTTTCTCGACAGGTGGTGGT
GTCCATATCTCCTCTGCCAGCGCCATCACTGGTCCCTGGACTGATCTCGG
GTATGCACTGCCTAACGGATCCATCGTTACAGTGGGAAATGCCTCCAACC
TTTGGGTAAGACAGACTGACAACCCTGGACATCACCCTTGCCATCTGCAG
TTCTGACATTCCCGCAGGCTCCGGACGTACACTACGTAGATGGCACATAC
TACATGTACTATGCTAGCTCTACCCTGGGCAGCCGGGATTCCACCATTGG
AGTTGCAACCTCCACCACCCTGGAAGCCGACTCCTGGACCGACCACGGCG
AGATTGGTGTCACCTCGTCTTCGTCCACCCCTTACAACGCCATTGACCCC
AACTGGATCACCATTGGCAGCACCCCCTATCTCCAATTCGGCTCCTACTG
GCAAGGTCTCTACCAGGTGGAAATGACCGACTCCCTGAGCGCCAGCAGCA
GCACGCCCACTAACTTGGCCTACAACGCATCGGGGAACCATGCTATCGAG
GCTTCTTACCTGTACGAGTACGGAGGCTACTACTACCTCACCTTCTCGTC
CGGCAAGGCTCAGGGGTACACGACCTCCCTGCCTGCCCAGGGCGATGAGT
ACCGCATTGTCGTTTGCCGGTCCAAGACTGGAACGGGTAACTTTGTAAGT
GCTATATGCCAATCATCAACATTCAAGGAATAGGGGGGGGAATGCTAATT
TCGCCTGCAGGTCGACAAGGATGGTGTTTCATGCCTGAACAGCGGCGGAA
CCACCGTTCTGGCCAGCCACGACTATGTCTACGGCCCTGGTGGACAGTAA
GTTTGCCCCTGTCTTCTTTTGTGGCTTGACGCACATCAAACGGGGAAGCA
TGCTAACAATGATCAATTGCAGGGGTATCATCAACACCACCAGCCACGGT
ATTGTCGTCTACTACCACTATGCCAACAAGAACATTGGCCTGGCTGTCGA
TGACTACCAGTTCGGCTGGAACACGCTCACCTGGACTGATGGGTGGCCTG
TTGTGGCGTGA
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Coding sequence (CDS) from alignment at An02:2616084..2617244+

>CBS51388_002067-T1 ID=CBS51388_002067-T1|Name=CBS51388_002067-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=3828bp|location=Sequence derived from alignment at An02:2616084..2617244+ (Aspergillus niger CBS 513.88)
ATGCTTTCGTTTGTCTTGCTTCTTTGTGTAGCGTTGGTCAACGCCTACTC
AGACCCGGGTGCATGCTCGGGAACCTGCTGGGCACACGACCCCAATGTCA
TTCGCCGTGTGTCGGATGGAACCTACTTTCGTTTCTCGACAGGTGGTGGT
GTCCATATCTCCTCTGCCAGCGCCATCACTGGTCCCTGGACTGATCTCGG
GTATGCACTGCCTAACGGATCCATCGTTACAGTGGGAAATGCCTCCAACC
TTTGGGCTCCGGACGTACACTACGTAGATGGCACATACTACATGTACTAT
GCTAGCTCTACCCTGGGCAGCCGGGATTCCACCATTGGAGTTGCAACCTC
CACCACCCTGGAAGCCGACTCCTGGACCGACCACGGCGAGATTGGTGTCA
CCTCGTCTTCGTCCACCCCTTACAACGCCATTGACCCCAACTGGATCACC
ATTGGCAGCACCCCCTATCTCCAATTCGGCTCCTACTGGCAAGGTCTCTA
CCAGGTGGAAATGACCGACTCCCTGAGCGCCAGCAGCAGCACGCCCACTA
ACTTGGCCTACAACGCATCGGGGAACCATGCTATCGAGGCTTCTTACCTG
TACGAGTACGGAGGCTACTACTACCTCACCTTCTCGTCCGGCAAGGCTCA
GGGGTACACGACCTCCCTGCCTGCCCAGGGCGATGAGTACCGCATTGTCG
TTTGCCGGTCCAAGACTGGAACGGGTAACTTTGTCGACAAGGATGGTGTT
TCATGCCTGAACAGCGGCGGAACCACCGTTCTGGCCAGCCACGACTATGT
CTACGGCCCTGGTGGACAGGGTATCATCAACACCACCAGCCACGGTATTG
TCGTCTACTACCACTATGCCAACAAGAACATTGGCCTGGCTGTCGATGAC
TACCAGTTCGGCTGGAACACGCTCACCTGGACTGATGGGTGGCCTGTTGT
GGCGTGAATGCTTTCGTTTGTCTTGCTTCTTTGTGTAGCGTTGGTCAACG
CCTACTCAGACCCGGGTGCATGCTCGGGAACCTGCTGGGCACACGACCCC
AATGTCATTCGCCGTGTGTCGGATGGAACCTACTTTCGTTTCTCGACAGG
TGGTGGTGTCCATATCTCCTCTGCCAGCGCCATCACTGGTCCCTGGACTG
ATCTCGGGTATGCACTGCCTAACGGATCCATCGTTACAGTGGGAAATGCC
TCCAACCTTTGGGCTCCGGACGTACACTACGTAGATGGCACATACTACAT
GTACTATGCTAGCTCTACCCTGGGCAGCCGGGATTCCACCATTGGAGTTG
CAACCTCCACCACCCTGGAAGCCGACTCCTGGACCGACCACGGCGAGATT
GGTGTCACCTCGTCTTCGTCCACCCCTTACAACGCCATTGACCCCAACTG
GATCACCATTGGCAGCACCCCCTATCTCCAATTCGGCTCCTACTGGCAAG
GTCTCTACCAGGTGGAAATGACCGACTCCCTGAGCGCCAGCAGCAGCACG
CCCACTAACTTGGCCTACAACGCATCGGGGAACCATGCTATCGAGGCTTC
TTACCTGTACGAGTACGGAGGCTACTACTACCTCACCTTCTCGTCCGGCA
AGGCTCAGGGGTACACGACCTCCCTGCCTGCCCAGGGCGATGAGTACCGC
ATTGTCGTTTGCCGGTCCAAGACTGGAACGGGTAACTTTGTCGACAAGGA
TGGTGTTTCATGCCTGAACAGCGGCGGAACCACCGTTCTGGCCAGCCACG
ACTATGTCTACGGCCCTGGTGGACAGGGTATCATCAACACCACCAGCCAC
GGTATTGTCGTCTACTACCACTATGCCAACAAGAACATTGGCCTGGCTGT
CGATGACTACCAGTTCGGCTGGAACACGCTCACCTGGACTGATGGGTGGC
CTGTTGTGGCGTGAATGCTTTCGTTTGTCTTGCTTCTTTGTGTAGCGTTG
GTCAACGCCTACTCAGACCCGGGTGCATGCTCGGGAACCTGCTGGGCACA
CGACCCCAATGTCATTCGCCGTGTGTCGGATGGAACCTACTTTCGTTTCT
CGACAGGTGGTGGTGTCCATATCTCCTCTGCCAGCGCCATCACTGGTCCC
TGGACTGATCTCGGGTATGCACTGCCTAACGGATCCATCGTTACAGTGGG
AAATGCCTCCAACCTTTGGGCTCCGGACGTACACTACGTAGATGGCACAT
ACTACATGTACTATGCTAGCTCTACCCTGGGCAGCCGGGATTCCACCATT
GGAGTTGCAACCTCCACCACCCTGGAAGCCGACTCCTGGACCGACCACGG
CGAGATTGGTGTCACCTCGTCTTCGTCCACCCCTTACAACGCCATTGACC
CCAACTGGATCACCATTGGCAGCACCCCCTATCTCCAATTCGGCTCCTAC
TGGCAAGGTCTCTACCAGGTGGAAATGACCGACTCCCTGAGCGCCAGCAG
CAGCACGCCCACTAACTTGGCCTACAACGCATCGGGGAACCATGCTATCG
AGGCTTCTTACCTGTACGAGTACGGAGGCTACTACTACCTCACCTTCTCG
TCCGGCAAGGCTCAGGGGTACACGACCTCCCTGCCTGCCCAGGGCGATGA
GTACCGCATTGTCGTTTGCCGGTCCAAGACTGGAACGGGTAACTTTGTCG
ACAAGGATGGTGTTTCATGCCTGAACAGCGGCGGAACCACCGTTCTGGCC
AGCCACGACTATGTCTACGGCCCTGGTGGACAGGGTATCATCAACACCAC
CAGCCACGGTATTGTCGTCTACTACCACTATGCCAACAAGAACATTGGCC
TGGCTGTCGATGACTACCAGTTCGGCTGGAACACGCTCACCTGGACTGAT
GGGTGGCCTGTTGTGGCGTGAATGCTTTCGTTTGTCTTGCTTCTTTGTGT
AGCGTTGGTCAACGCCTACTCAGACCCGGGTGCATGCTCGGGAACCTGCT
GGGCACACGACCCCAATGTCATTCGCCGTGTGTCGGATGGAACCTACTTT
CGTTTCTCGACAGGTGGTGGTGTCCATATCTCCTCTGCCAGCGCCATCAC
TGGTCCCTGGACTGATCTCGGGTATGCACTGCCTAACGGATCCATCGTTA
CAGTGGGAAATGCCTCCAACCTTTGGGCTCCGGACGTACACTACGTAGAT
GGCACATACTACATGTACTATGCTAGCTCTACCCTGGGCAGCCGGGATTC
CACCATTGGAGTTGCAACCTCCACCACCCTGGAAGCCGACTCCTGGACCG
ACCACGGCGAGATTGGTGTCACCTCGTCTTCGTCCACCCCTTACAACGCC
ATTGACCCCAACTGGATCACCATTGGCAGCACCCCCTATCTCCAATTCGG
CTCCTACTGGCAAGGTCTCTACCAGGTGGAAATGACCGACTCCCTGAGCG
CCAGCAGCAGCACGCCCACTAACTTGGCCTACAACGCATCGGGGAACCAT
GCTATCGAGGCTTCTTACCTGTACGAGTACGGAGGCTACTACTACCTCAC
CTTCTCGTCCGGCAAGGCTCAGGGGTACACGACCTCCCTGCCTGCCCAGG
GCGATGAGTACCGCATTGTCGTTTGCCGGTCCAAGACTGGAACGGGTAAC
TTTGTCGACAAGGATGGTGTTTCATGCCTGAACAGCGGCGGAACCACCGT
TCTGGCCAGCCACGACTATGTCTACGGCCCTGGTGGACAGGGTATCATCA
ACACCACCAGCCACGGTATTGTCGTCTACTACCACTATGCCAACAAGAAC
ATTGGCCTGGCTGTCGATGACTACCAGTTCGGCTGGAACACGCTCACCTG
GACTGATGGGTGGCCTGTTGTGGCGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0046558arabinan endo-1,5-alpha-L-arabinosidase activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_002067CBS51388_002067Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002067-T1.exon1CBS51388_002067-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_002067-T1.exon2CBS51388_002067-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_002067-T1.exon3CBS51388_002067-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_002067-T1.exon4CBS51388_002067-T1.exon4Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002067-T1.cdsCBS51388_002067-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002067-T1CBS51388_002067-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
NoteSECRETED:SignalP(1-15)
NoteCAZy:GH43_7
NoteCAZy:GH43_30
NoteCAZy:GH43_4
NoteCAZy:GH43_3
NoteCAZy:GH43
NoteCAZy:GH43_5
NoteCAZy:GH43_6
DBxrefInterPro:IPR023296
DBxrefInterPro:IPR016840
DBxrefInterPro:IPR006710
DBxrefPFAM:PF04616
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An02supercontigAn02:2616084..2617244 +
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