You are here

Home

CBS51388_002474-T1, CBS51388_002474-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_002474-T1
Unique NameCBS51388_002474-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An03:169439..170695+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_002474-T1 ID=CBS51388_002474-T1|Name=CBS51388_002474-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1257bp|location=Sequence derived from alignment at An03:169439..170695+ (Aspergillus niger CBS 513.88)
ATGGAGCCCCTCCAGCATCATCTTCCGCAAACTTCGCTGGCTTTTCTCGC
CTTACTGGCCGTCCCGATAACGGCGCTGGTATGGGATCGCATATTGAACC
CACTTCCGACAACAAAGCGGGCTTGGCTTGTTGGCAAGAAGCAACCATCT
CGGATCACTTCACTGGAGTGCCCCTACAGCTACATCCGCCAAATCTACGG
TAAACACCACTGGGCCCCATTTGTCGACAAGCTGGCGCCCAGCCTCAAGT
TGGAGGACCCGCCGAAGTACCAGCTGGTCCTTGAGATTATGGACGGCATC
CATCTCTGTTTAATACTGGTTGATGATGTAAGTGCAGCACCCCACTGAAC
ATATGGAGTAGAGAGCTAATAACCCCATAAGATCTCGGACGGGAGTAACT
TTCGCAAGGGACATCCCGCCGCGCACAAGATATACGGCCCTTCAGAGACT
GCGAACCGTGCCTACTATCGCGTGACACAACTTTTAAACCGGACCGTCCA
CGAATTTCCTCGTCTTGCGCCCTTTCTGATGCAGTGCCTGGAGGAGATCC
TGGAAGGCCAAGATATGTCCCTTGTATGGCGAAGGGATGGTCTTGCCAGC
TTTCCAGTGGGTCCAAAGGAACGGGATGCAGCATATCGGCAAATGGCGTC
GCTGAAAACGGGCGCATTGTTTCGTTTGCTCGGTCAGCTGGTACTAGAGA
ATAAGTCCATGGATGCTACCATGACTACGGTGGCGTATGTGCAAAGACAT
CCGAGCATTGGGGATTATGGCTGATTGACGTCTACACAGGTGGTGCTCAC
AGCTGCAGAATGACTGCAAGAACGTTTATTCGACCGATTATGCGAAAGCC
AAAGGTGCACTGGCAGAAGACCTGCGCAACGGCGAGCTTTCCTTCCCCAT
AGTGGTGGCATTGGATGCTCCCGAGGGTCATCTGATAGCGCGCGCCTTGG
AATACGGCTCACCCCATAATATCCGTAATGCTCTACGAGTAATTCAAAGA
GAAGATGTGCGTAGCGCCTGCTTGTGGGATTTGAAGAAATCAAGTGCCTC
CGTACAGGATTGGCTGGAAGTTTGGGGTCGGAAGGAAAAAATGGATGTCA
AGAGTGTGAAGCCGTAAGCGGGAATGTAGATAGGCGAATACTTTGCTTAG
TGATGGAAACTGTTGCAATACTCCTTATTTAAGAGAATTTAATCTCTCTA
TCCTATAGGATTCTCATTACTGACTGCGATAAGCTTTGCACTGAGGCACA
GGGATAA
back to top

Coding sequence (CDS) from alignment at An03:169439..170695+

>CBS51388_002474-T1 ID=CBS51388_002474-T1|Name=CBS51388_002474-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=4212bp|location=Sequence derived from alignment at An03:169439..170695+ (Aspergillus niger CBS 513.88)
ATGGAGCCCCTCCAGCATCATCTTCCGCAAACTTCGCTGGCTTTTCTCGC
CTTACTGGCCGTCCCGATAACGGCGCTGGTATGGGATCGCATATTGAACC
CACTTCCGACAACAAAGCGGGCTTGGCTTGTTGGCAAGAAGCAACCATCT
CGGATCACTTCACTGGAGTGCCCCTACAGCTACATCCGCCAAATCTACGG
TAAACACCACTGGGCCCCATTTGTCGACAAGCTGGCGCCCAGCCTCAAGT
TGGAGGACCCGCCGAAGTACCAGCTGGTCCTTGAGATTATGGACGGCATC
CATCTCTGTTTAATACTGGTTGATGATATCTCGGACGGGAGTAACTTTCG
CAAGGGACATCCCGCCGCGCACAAGATATACGGCCCTTCAGAGACTGCGA
ACCGTGCCTACTATCGCGTGACACAACTTTTAAACCGGACCGTCCACGAA
TTTCCTCGTCTTGCGCCCTTTCTGATGCAGTGCCTGGAGGAGATCCTGGA
AGGCCAAGATATGTCCCTTGTATGGCGAAGGGATGGTCTTGCCAGCTTTC
CAGTGGGTCCAAAGGAACGGGATGCAGCATATCGGCAAATGGCGTCGCTG
AAAACGGGCGCATTGTTTCGTTTGCTCGGTCAGCTGGTACTAGAGAATAA
GTCCATGGATGCTACCATGACTACGGTGGCGTGGTGCTCACAGCTGCAGA
ATGACTGCAAGAACGTTTATTCGACCGATTATGCGAAAGCCAAAGGTGCA
CTGGCAGAAGACCTGCGCAACGGCGAGCTTTCCTTCCCCATAGTGGTGGC
ATTGGATGCTCCCGAGGGTCATCTGATAGCGCGCGCCTTGGAATACGGCT
CACCCCATAATATCCGTAATGCTCTACGAGTAATTCAAAGAGAAGATGTG
CGTAGCGCCTGCTTGTGGGATTTGAAGAAATCAAGTGCCTCCGTACAGGA
TTGGCTGGAAGTTTGGGGTCGGAAGGAAAAAATGGATGTCAAGAGTGTGA
AGCCGATTCTCATTACTGACTGCGATAAGCTTTGCACTGAGGCACAGGGA
TAAATGGAGCCCCTCCAGCATCATCTTCCGCAAACTTCGCTGGCTTTTCT
CGCCTTACTGGCCGTCCCGATAACGGCGCTGGTATGGGATCGCATATTGA
ACCCACTTCCGACAACAAAGCGGGCTTGGCTTGTTGGCAAGAAGCAACCA
TCTCGGATCACTTCACTGGAGTGCCCCTACAGCTACATCCGCCAAATCTA
CGGTAAACACCACTGGGCCCCATTTGTCGACAAGCTGGCGCCCAGCCTCA
AGTTGGAGGACCCGCCGAAGTACCAGCTGGTCCTTGAGATTATGGACGGC
ATCCATCTCTGTTTAATACTGGTTGATGATATCTCGGACGGGAGTAACTT
TCGCAAGGGACATCCCGCCGCGCACAAGATATACGGCCCTTCAGAGACTG
CGAACCGTGCCTACTATCGCGTGACACAACTTTTAAACCGGACCGTCCAC
GAATTTCCTCGTCTTGCGCCCTTTCTGATGCAGTGCCTGGAGGAGATCCT
GGAAGGCCAAGATATGTCCCTTGTATGGCGAAGGGATGGTCTTGCCAGCT
TTCCAGTGGGTCCAAAGGAACGGGATGCAGCATATCGGCAAATGGCGTCG
CTGAAAACGGGCGCATTGTTTCGTTTGCTCGGTCAGCTGGTACTAGAGAA
TAAGTCCATGGATGCTACCATGACTACGGTGGCGTGGTGCTCACAGCTGC
AGAATGACTGCAAGAACGTTTATTCGACCGATTATGCGAAAGCCAAAGGT
GCACTGGCAGAAGACCTGCGCAACGGCGAGCTTTCCTTCCCCATAGTGGT
GGCATTGGATGCTCCCGAGGGTCATCTGATAGCGCGCGCCTTGGAATACG
GCTCACCCCATAATATCCGTAATGCTCTACGAGTAATTCAAAGAGAAGAT
GTGCGTAGCGCCTGCTTGTGGGATTTGAAGAAATCAAGTGCCTCCGTACA
GGATTGGCTGGAAGTTTGGGGTCGGAAGGAAAAAATGGATGTCAAGAGTG
TGAAGCCGATTCTCATTACTGACTGCGATAAGCTTTGCACTGAGGCACAG
GGATAAATGGAGCCCCTCCAGCATCATCTTCCGCAAACTTCGCTGGCTTT
TCTCGCCTTACTGGCCGTCCCGATAACGGCGCTGGTATGGGATCGCATAT
TGAACCCACTTCCGACAACAAAGCGGGCTTGGCTTGTTGGCAAGAAGCAA
CCATCTCGGATCACTTCACTGGAGTGCCCCTACAGCTACATCCGCCAAAT
CTACGGTAAACACCACTGGGCCCCATTTGTCGACAAGCTGGCGCCCAGCC
TCAAGTTGGAGGACCCGCCGAAGTACCAGCTGGTCCTTGAGATTATGGAC
GGCATCCATCTCTGTTTAATACTGGTTGATGATATCTCGGACGGGAGTAA
CTTTCGCAAGGGACATCCCGCCGCGCACAAGATATACGGCCCTTCAGAGA
CTGCGAACCGTGCCTACTATCGCGTGACACAACTTTTAAACCGGACCGTC
CACGAATTTCCTCGTCTTGCGCCCTTTCTGATGCAGTGCCTGGAGGAGAT
CCTGGAAGGCCAAGATATGTCCCTTGTATGGCGAAGGGATGGTCTTGCCA
GCTTTCCAGTGGGTCCAAAGGAACGGGATGCAGCATATCGGCAAATGGCG
TCGCTGAAAACGGGCGCATTGTTTCGTTTGCTCGGTCAGCTGGTACTAGA
GAATAAGTCCATGGATGCTACCATGACTACGGTGGCGTGGTGCTCACAGC
TGCAGAATGACTGCAAGAACGTTTATTCGACCGATTATGCGAAAGCCAAA
GGTGCACTGGCAGAAGACCTGCGCAACGGCGAGCTTTCCTTCCCCATAGT
GGTGGCATTGGATGCTCCCGAGGGTCATCTGATAGCGCGCGCCTTGGAAT
ACGGCTCACCCCATAATATCCGTAATGCTCTACGAGTAATTCAAAGAGAA
GATGTGCGTAGCGCCTGCTTGTGGGATTTGAAGAAATCAAGTGCCTCCGT
ACAGGATTGGCTGGAAGTTTGGGGTCGGAAGGAAAAAATGGATGTCAAGA
GTGTGAAGCCGATTCTCATTACTGACTGCGATAAGCTTTGCACTGAGGCA
CAGGGATAAATGGAGCCCCTCCAGCATCATCTTCCGCAAACTTCGCTGGC
TTTTCTCGCCTTACTGGCCGTCCCGATAACGGCGCTGGTATGGGATCGCA
TATTGAACCCACTTCCGACAACAAAGCGGGCTTGGCTTGTTGGCAAGAAG
CAACCATCTCGGATCACTTCACTGGAGTGCCCCTACAGCTACATCCGCCA
AATCTACGGTAAACACCACTGGGCCCCATTTGTCGACAAGCTGGCGCCCA
GCCTCAAGTTGGAGGACCCGCCGAAGTACCAGCTGGTCCTTGAGATTATG
GACGGCATCCATCTCTGTTTAATACTGGTTGATGATATCTCGGACGGGAG
TAACTTTCGCAAGGGACATCCCGCCGCGCACAAGATATACGGCCCTTCAG
AGACTGCGAACCGTGCCTACTATCGCGTGACACAACTTTTAAACCGGACC
GTCCACGAATTTCCTCGTCTTGCGCCCTTTCTGATGCAGTGCCTGGAGGA
GATCCTGGAAGGCCAAGATATGTCCCTTGTATGGCGAAGGGATGGTCTTG
CCAGCTTTCCAGTGGGTCCAAAGGAACGGGATGCAGCATATCGGCAAATG
GCGTCGCTGAAAACGGGCGCATTGTTTCGTTTGCTCGGTCAGCTGGTACT
AGAGAATAAGTCCATGGATGCTACCATGACTACGGTGGCGTGGTGCTCAC
AGCTGCAGAATGACTGCAAGAACGTTTATTCGACCGATTATGCGAAAGCC
AAAGGTGCACTGGCAGAAGACCTGCGCAACGGCGAGCTTTCCTTCCCCAT
AGTGGTGGCATTGGATGCTCCCGAGGGTCATCTGATAGCGCGCGCCTTGG
AATACGGCTCACCCCATAATATCCGTAATGCTCTACGAGTAATTCAAAGA
GAAGATGTGCGTAGCGCCTGCTTGTGGGATTTGAAGAAATCAAGTGCCTC
CGTACAGGATTGGCTGGAAGTTTGGGGTCGGAAGGAAAAAATGGATGTCA
AGAGTGTGAAGCCGATTCTCATTACTGACTGCGATAAGCTTTGCACTGAG
GCACAGGGATAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0008299isoprenoid biosynthetic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_002474CBS51388_002474Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002474-T1.exon1CBS51388_002474-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_002474-T1.exon2CBS51388_002474-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_002474-T1.exon3CBS51388_002474-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_002474-T1.exon4CBS51388_002474-T1.exon4Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002474-T1.cdsCBS51388_002474-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002474-T1CBS51388_002474-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
NoteantiSMASH:Cluster_3.3
NoteSMCOG1182:Polyprenyl synthetase
DBxrefInterPro:IPR008949
DBxrefInterPro:IPR000092
DBxrefPFAM:PF00348
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An03supercontigAn03:169439..170695 +
Powered by Drupal