You are here

Home

CBS51388_002705-T1, CBS51388_002705-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_002705-T1
Unique NameCBS51388_002705-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An03:891632..892119+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_002705-T1 ID=CBS51388_002705-T1|Name=CBS51388_002705-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=488bp|location=Sequence derived from alignment at An03:891632..892119+ (Aspergillus niger CBS 513.88)
ATGTCCTGGTCTCAGACCCCCGATGCTGTTGGGATATTATCTAGATGGGA
TCCAGAGACCGGTCGAGCGGACGAGCAGCTGATCATCCGGAGCCACCAGA
CGGTATATGTCGGTAGAGACCCGGATAAGTGGTACGCTTTCTATCCCATC
TCGCATGTGGAAGTTAACCGATACAAAGTCATTTCGTGCTGGATAATAAG
TTCGTTTCTCGTCAACACCTCCGCATATATACCATTCTATTCGACCATGA
GAACCCTGGAAGCATTTTGCCATTGGTTTACGCCGAGGACATCTCCGAAA
ATGGGGCTGTATGGAACATCTACCCCATGTCAGGCAAGGGTGGATTTCTC
CTCAGTGATGGCGACATAATCCAGCTGCCGGTGGGTATATTTCTCAGGTT
CAGTTATCAGATGCATGTGCAAGAACGCCTTGGTATCGTCATGACCAAAG
AGATCCAGGTTAGCAGTGCGATTCCACATCGAGATTGA
back to top

Coding sequence (CDS) from alignment at An03:891632..892119+

>CBS51388_002705-T1 ID=CBS51388_002705-T1|Name=CBS51388_002705-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=882bp|location=Sequence derived from alignment at An03:891632..892119+ (Aspergillus niger CBS 513.88)
ATGTCCTGGTCTCAGACCCCCGATGCTGTTGGGATATTATCTAGATGGGA
TCCAGAGACCGGTCGAGCGGACGAGCAGCTGATCATCCGGAGCCACCAGA
CGGTATATGTCGGTAGAGACCCGGATAAGTGTCATTTCGTGCTGGATAAT
AAGTTCGTTTCTCGTCAACACCTCCGCATATATACCATTCTATTCGACCA
TGAGAACCCTGGAAGCATTTTGCCATTGGTTTACGCCGAGGACATCTCCG
AAAATGGGGCTGTATGGAACATCTACCCCATGTCAGGCAAGGGTGGATTT
CTCCTCAGTGATGGCGACATAATCCAGCTGCCGGTGGGTATATTTCTCAG
GTTCAGTTATCAGATGCATGTGCAAGAACGCCTTGGTATCGTCATGACCA
AAGAGATCCAGGTTAGCAGTGCGATTCCACATCGAGATTGAATGTCCTGG
TCTCAGACCCCCGATGCTGTTGGGATATTATCTAGATGGGATCCAGAGAC
CGGTCGAGCGGACGAGCAGCTGATCATCCGGAGCCACCAGACGGTATATG
TCGGTAGAGACCCGGATAAGTGTCATTTCGTGCTGGATAATAAGTTCGTT
TCTCGTCAACACCTCCGCATATATACCATTCTATTCGACCATGAGAACCC
TGGAAGCATTTTGCCATTGGTTTACGCCGAGGACATCTCCGAAAATGGGG
CTGTATGGAACATCTACCCCATGTCAGGCAAGGGTGGATTTCTCCTCAGT
GATGGCGACATAATCCAGCTGCCGGTGGGTATATTTCTCAGGTTCAGTTA
TCAGATGCATGTGCAAGAACGCCTTGGTATCGTCATGACCAAAGAGATCC
AGGTTAGCAGTGCGATTCCACATCGAGATTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_002705CBS51388_002705Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002705-T1.exon1CBS51388_002705-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_002705-T1.exon2CBS51388_002705-T1.exon2Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002705-T1.cdsCBS51388_002705-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_002705-T1CBS51388_002705-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR008984
DBxrefInterPro:IPR000253
DBxrefPFAM:PF00498
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An03supercontigAn03:891632..892119 +
Powered by Drupal