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Sequences
The following sequences are available for this feature:
mRNA from alignment at An03:1529427..1531002- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_002927-T1 ID=CBS51388_002927-T1|Name=CBS51388_002927-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1576bp|location=Sequence derived from alignment at An03:1529427..1531002- (Aspergillus niger CBS 513.88)
ATGTACCTCCTTCCCTTGACGCTCTTCCTCACCGCCGCTTTCGGCGTCTC
AATCCCTAGATCTCCCCTCATCCCCGGCGCACAAATCGTCCCCGCATCCA
GCACAGCAGATCTACGAGCCATTGGTGCTCAACATCACAAGTATCCAGAC
CGAGAGACAGTTACTATTCGGGCCTCGAGGAACGCCCTCGACGATGTGTC
CAGTGACTTCCTCTGGGGCTTGAAGCAGGCGAACCATGGCGGTCGGTTGT
TGTTGAAGCAGGGGGAGACCTACGTGATTGGGAAGAAGTTAGATTTGACA
TTCTTGGATAATATTGAGGTGCAGCTTGAGGGAGAAATTCAGGTACTTTC
CTTGCCCTTCTTCAATACGGAGTATTGAAAATATGATACTGATTTCGGTG
GTCCTGCTTAGTTCACAAACAACATCACCTACTGGCAAGCCAACAACTTT
TACTACGACTTCCAGAAATCCATCACCTTCTGGCGCTGGGGTGGCCAGGA
CATCAAGATCTTCGGGAGTGGTGTGTTGAACGGCAATGGACAGAAATGGT
ATGATGAGTTTGCGGGGAAGCAGATCTTGGTATGTCACACCATGATACCA
TCCGTACCTCCCTGAAAGAACAGACAATGCTGATGACAGCAACGATGATA
GGACTCAGATAACACGTTCTACCGTCCCATTCTCTTCCTCACCGATAATG
CAACCCGTATCTCCGTCGAGGGCATCACGCAGCTGAACTCGCCGTGCTGG
ACGAACTTTTTCGTTCGGACCAATGATGTCTCGTTTGATAATGTGTATAT
TCATGCGTTCTCGACCAATGCTTCAGTCAGTCCTCTATTCCTCTGGCTTT
TAGTTGATTTCCATTGCATGGATGCTAACTGATGACAGTCCGACCCCGCC
AACACCGACGGTATGGACTCTCTCGACGTCGATGGCGTCAGCTTCACCAA
TATGCGCATCGATGTCGGAGATGACTGCTTCTCGCCGAAGCCGAACACAA
CCAACATTTTCGTGCAGAACATGTGGTGCAATAACACGCACGGGGTGAGT
ATGGGTAGTATTGGCCAGTACGCGGGCGAGATGGATATCATTGAGAACGT
GTACATTGAGAATGTGACGTTGCTGAATGGACAGGTACGTCTTCTTGTTC
CCCACTGACCCATATTACAAGACTGATGTGGAATAGAACGGCGCCCGCCT
CAAAGCCTGGGCCGGCCAAGACGTCGGCTACGGCCGCATCAATAACGTCA
CGTACAAGAACATCCAGATCCAGAACACGGATGCGCCGATCGTGCTGGAC
CAGTGCTACTTTGATATCAACGCTACAGAGTGTGCCAAGTACCCGTCTGC
TGTGAATATCACGAATATCCTGTTCGAGAATATCTGGGGCTCTTCCTCGG
GCAAAGATGGCAAGATTGTAGCTGATCTGGTGTGTTCGCCAGATGCGGTG
TGCACGAACATTACTTTGTCGAATGTCAACTTGACGAGCCCGAAGGGCAC
TGCAGAGATTGTTTGCGATGACATTCAGGGAGGAATTGGGGTGGATTGTG
TGAGTGACGAGAGTGTTACGCGGTAG back to topCoding sequence (CDS) from alignment at An03:1529427..1531002- >CBS51388_002927-T1 ID=CBS51388_002927-T1|Name=CBS51388_002927-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=6600bp|location=Sequence derived from alignment at An03:1529427..1531002- (Aspergillus niger CBS 513.88)
AACGGCGCCCGCCTCAAAGCCTGGGCCGGCCAAGACGTCGGCTACGGCCG
CATCAATAACGTCACGTACAAGAACATCCAGATCCAGAACACGGATGCGC
CGATCGTGCTGGACCAGTGCTACTTTGATATCAACGCTACAGAGTGTGCC
AAGTACCCGTCTGCTGTGAATATCACGAATATCCTGTTCGAGAATATCTG
GGGCTCTTCCTCGGGCAAAGATGGCAAGATTGTAGCTGATCTGGTGTGTT
CGCCAGATGCGGTGTGCACGAACATTACTTTGTCGAATGTCAACTTGACG
AGCCCGAAGGGCACTGCAGAGATTGTTTGCGATGACATTCAGGGAGGAAT
TGGGGTGGATTGTGTGAGTGACGAGAGTGTTACGCGGTAGTCCGACCCCG
CCAACACCGACGGTATGGACTCTCTCGACGTCGATGGCGTCAGCTTCACC
AATATGCGCATCGATGTCGGAGATGACTGCTTCTCGCCGAAGCCGAACAC
AACCAACATTTTCGTGCAGAACATGTGGTGCAATAACACGCACGGGGTGA
GTATGGGTAGTATTGGCCAGTACGCGGGCGAGATGGATATCATTGAGAAC
GTGTACATTGAGAATGTGACGTTGCTGAATGGACAGGACTCAGATAACAC
GTTCTACCGTCCCATTCTCTTCCTCACCGATAATGCAACCCGTATCTCCG
TCGAGGGCATCACGCAGCTGAACTCGCCGTGCTGGACGAACTTTTTCGTT
CGGACCAATGATGTCTCGTTTGATAATGTGTATATTCATGCGTTCTCGAC
CAATGCTTCATTCACAAACAACATCACCTACTGGCAAGCCAACAACTTTT
ACTACGACTTCCAGAAATCCATCACCTTCTGGCGCTGGGGTGGCCAGGAC
ATCAAGATCTTCGGGAGTGGTGTGTTGAACGGCAATGGACAGAAATGGTA
TGATGAGTTTGCGGGGAAGCAGATCTTGATGTACCTCCTTCCCTTGACGC
TCTTCCTCACCGCCGCTTTCGGCGTCTCAATCCCTAGATCTCCCCTCATC
CCCGGCGCACAAATCGTCCCCGCATCCAGCACAGCAGATCTACGAGCCAT
TGGTGCTCAACATCACAAGTATCCAGACCGAGAGACAGTTACTATTCGGG
CCTCGAGGAACGCCCTCGACGATGTGTCCAGTGACTTCCTCTGGGGCTTG
AAGCAGGCGAACCATGGCGGTCGGTTGTTGTTGAAGCAGGGGGAGACCTA
CGTGATTGGGAAGAAGTTAGATTTGACATTCTTGGATAATATTGAGGTGC
AGCTTGAGGGAGAAATTCAGAACGGCGCCCGCCTCAAAGCCTGGGCCGGC
CAAGACGTCGGCTACGGCCGCATCAATAACGTCACGTACAAGAACATCCA
GATCCAGAACACGGATGCGCCGATCGTGCTGGACCAGTGCTACTTTGATA
TCAACGCTACAGAGTGTGCCAAGTACCCGTCTGCTGTGAATATCACGAAT
ATCCTGTTCGAGAATATCTGGGGCTCTTCCTCGGGCAAAGATGGCAAGAT
TGTAGCTGATCTGGTGTGTTCGCCAGATGCGGTGTGCACGAACATTACTT
TGTCGAATGTCAACTTGACGAGCCCGAAGGGCACTGCAGAGATTGTTTGC
GATGACATTCAGGGAGGAATTGGGGTGGATTGTGTGAGTGACGAGAGTGT
TACGCGGTAGTCCGACCCCGCCAACACCGACGGTATGGACTCTCTCGACG
TCGATGGCGTCAGCTTCACCAATATGCGCATCGATGTCGGAGATGACTGC
TTCTCGCCGAAGCCGAACACAACCAACATTTTCGTGCAGAACATGTGGTG
CAATAACACGCACGGGGTGAGTATGGGTAGTATTGGCCAGTACGCGGGCG
AGATGGATATCATTGAGAACGTGTACATTGAGAATGTGACGTTGCTGAAT
GGACAGGACTCAGATAACACGTTCTACCGTCCCATTCTCTTCCTCACCGA
TAATGCAACCCGTATCTCCGTCGAGGGCATCACGCAGCTGAACTCGCCGT
GCTGGACGAACTTTTTCGTTCGGACCAATGATGTCTCGTTTGATAATGTG
TATATTCATGCGTTCTCGACCAATGCTTCATTCACAAACAACATCACCTA
CTGGCAAGCCAACAACTTTTACTACGACTTCCAGAAATCCATCACCTTCT
GGCGCTGGGGTGGCCAGGACATCAAGATCTTCGGGAGTGGTGTGTTGAAC
GGCAATGGACAGAAATGGTATGATGAGTTTGCGGGGAAGCAGATCTTGAT
GTACCTCCTTCCCTTGACGCTCTTCCTCACCGCCGCTTTCGGCGTCTCAA
TCCCTAGATCTCCCCTCATCCCCGGCGCACAAATCGTCCCCGCATCCAGC
ACAGCAGATCTACGAGCCATTGGTGCTCAACATCACAAGTATCCAGACCG
AGAGACAGTTACTATTCGGGCCTCGAGGAACGCCCTCGACGATGTGTCCA
GTGACTTCCTCTGGGGCTTGAAGCAGGCGAACCATGGCGGTCGGTTGTTG
TTGAAGCAGGGGGAGACCTACGTGATTGGGAAGAAGTTAGATTTGACATT
CTTGGATAATATTGAGGTGCAGCTTGAGGGAGAAATTCAGAACGGCGCCC
GCCTCAAAGCCTGGGCCGGCCAAGACGTCGGCTACGGCCGCATCAATAAC
GTCACGTACAAGAACATCCAGATCCAGAACACGGATGCGCCGATCGTGCT
GGACCAGTGCTACTTTGATATCAACGCTACAGAGTGTGCCAAGTACCCGT
CTGCTGTGAATATCACGAATATCCTGTTCGAGAATATCTGGGGCTCTTCC
TCGGGCAAAGATGGCAAGATTGTAGCTGATCTGGTGTGTTCGCCAGATGC
GGTGTGCACGAACATTACTTTGTCGAATGTCAACTTGACGAGCCCGAAGG
GCACTGCAGAGATTGTTTGCGATGACATTCAGGGAGGAATTGGGGTGGAT
TGTGTGAGTGACGAGAGTGTTACGCGGTAGTCCGACCCCGCCAACACCGA
CGGTATGGACTCTCTCGACGTCGATGGCGTCAGCTTCACCAATATGCGCA
TCGATGTCGGAGATGACTGCTTCTCGCCGAAGCCGAACACAACCAACATT
TTCGTGCAGAACATGTGGTGCAATAACACGCACGGGGTGAGTATGGGTAG
TATTGGCCAGTACGCGGGCGAGATGGATATCATTGAGAACGTGTACATTG
AGAATGTGACGTTGCTGAATGGACAGGACTCAGATAACACGTTCTACCGT
CCCATTCTCTTCCTCACCGATAATGCAACCCGTATCTCCGTCGAGGGCAT
CACGCAGCTGAACTCGCCGTGCTGGACGAACTTTTTCGTTCGGACCAATG
ATGTCTCGTTTGATAATGTGTATATTCATGCGTTCTCGACCAATGCTTCA
TTCACAAACAACATCACCTACTGGCAAGCCAACAACTTTTACTACGACTT
CCAGAAATCCATCACCTTCTGGCGCTGGGGTGGCCAGGACATCAAGATCT
TCGGGAGTGGTGTGTTGAACGGCAATGGACAGAAATGGTATGATGAGTTT
GCGGGGAAGCAGATCTTGATGTACCTCCTTCCCTTGACGCTCTTCCTCAC
CGCCGCTTTCGGCGTCTCAATCCCTAGATCTCCCCTCATCCCCGGCGCAC
AAATCGTCCCCGCATCCAGCACAGCAGATCTACGAGCCATTGGTGCTCAA
CATCACAAGTATCCAGACCGAGAGACAGTTACTATTCGGGCCTCGAGGAA
CGCCCTCGACGATGTGTCCAGTGACTTCCTCTGGGGCTTGAAGCAGGCGA
ACCATGGCGGTCGGTTGTTGTTGAAGCAGGGGGAGACCTACGTGATTGGG
AAGAAGTTAGATTTGACATTCTTGGATAATATTGAGGTGCAGCTTGAGGG
AGAAATTCAGAACGGCGCCCGCCTCAAAGCCTGGGCCGGCCAAGACGTCG
GCTACGGCCGCATCAATAACGTCACGTACAAGAACATCCAGATCCAGAAC
ACGGATGCGCCGATCGTGCTGGACCAGTGCTACTTTGATATCAACGCTAC
AGAGTGTGCCAAGTACCCGTCTGCTGTGAATATCACGAATATCCTGTTCG
AGAATATCTGGGGCTCTTCCTCGGGCAAAGATGGCAAGATTGTAGCTGAT
CTGGTGTGTTCGCCAGATGCGGTGTGCACGAACATTACTTTGTCGAATGT
CAACTTGACGAGCCCGAAGGGCACTGCAGAGATTGTTTGCGATGACATTC
AGGGAGGAATTGGGGTGGATTGTGTGAGTGACGAGAGTGTTACGCGGTAG
TCCGACCCCGCCAACACCGACGGTATGGACTCTCTCGACGTCGATGGCGT
CAGCTTCACCAATATGCGCATCGATGTCGGAGATGACTGCTTCTCGCCGA
AGCCGAACACAACCAACATTTTCGTGCAGAACATGTGGTGCAATAACACG
CACGGGGTGAGTATGGGTAGTATTGGCCAGTACGCGGGCGAGATGGATAT
CATTGAGAACGTGTACATTGAGAATGTGACGTTGCTGAATGGACAGGACT
CAGATAACACGTTCTACCGTCCCATTCTCTTCCTCACCGATAATGCAACC
CGTATCTCCGTCGAGGGCATCACGCAGCTGAACTCGCCGTGCTGGACGAA
CTTTTTCGTTCGGACCAATGATGTCTCGTTTGATAATGTGTATATTCATG
CGTTCTCGACCAATGCTTCATTCACAAACAACATCACCTACTGGCAAGCC
AACAACTTTTACTACGACTTCCAGAAATCCATCACCTTCTGGCGCTGGGG
TGGCCAGGACATCAAGATCTTCGGGAGTGGTGTGTTGAACGGCAATGGAC
AGAAATGGTATGATGAGTTTGCGGGGAAGCAGATCTTGATGTACCTCCTT
CCCTTGACGCTCTTCCTCACCGCCGCTTTCGGCGTCTCAATCCCTAGATC
TCCCCTCATCCCCGGCGCACAAATCGTCCCCGCATCCAGCACAGCAGATC
TACGAGCCATTGGTGCTCAACATCACAAGTATCCAGACCGAGAGACAGTT
ACTATTCGGGCCTCGAGGAACGCCCTCGACGATGTGTCCAGTGACTTCCT
CTGGGGCTTGAAGCAGGCGAACCATGGCGGTCGGTTGTTGTTGAAGCAGG
GGGAGACCTACGTGATTGGGAAGAAGTTAGATTTGACATTCTTGGATAAT
ATTGAGGTGCAGCTTGAGGGAGAAATTCAGAACGGCGCCCGCCTCAAAGC
CTGGGCCGGCCAAGACGTCGGCTACGGCCGCATCAATAACGTCACGTACA
AGAACATCCAGATCCAGAACACGGATGCGCCGATCGTGCTGGACCAGTGC
TACTTTGATATCAACGCTACAGAGTGTGCCAAGTACCCGTCTGCTGTGAA
TATCACGAATATCCTGTTCGAGAATATCTGGGGCTCTTCCTCGGGCAAAG
ATGGCAAGATTGTAGCTGATCTGGTGTGTTCGCCAGATGCGGTGTGCACG
AACATTACTTTGTCGAATGTCAACTTGACGAGCCCGAAGGGCACTGCAGA
GATTGTTTGCGATGACATTCAGGGAGGAATTGGGGTGGATTGTGTGAGTG
ACGAGAGTGTTACGCGGTAGTCCGACCCCGCCAACACCGACGGTATGGAC
TCTCTCGACGTCGATGGCGTCAGCTTCACCAATATGCGCATCGATGTCGG
AGATGACTGCTTCTCGCCGAAGCCGAACACAACCAACATTTTCGTGCAGA
ACATGTGGTGCAATAACACGCACGGGGTGAGTATGGGTAGTATTGGCCAG
TACGCGGGCGAGATGGATATCATTGAGAACGTGTACATTGAGAATGTGAC
GTTGCTGAATGGACAGGACTCAGATAACACGTTCTACCGTCCCATTCTCT
TCCTCACCGATAATGCAACCCGTATCTCCGTCGAGGGCATCACGCAGCTG
AACTCGCCGTGCTGGACGAACTTTTTCGTTCGGACCAATGATGTCTCGTT
TGATAATGTGTATATTCATGCGTTCTCGACCAATGCTTCATTCACAAACA
ACATCACCTACTGGCAAGCCAACAACTTTTACTACGACTTCCAGAAATCC
ATCACCTTCTGGCGCTGGGGTGGCCAGGACATCAAGATCTTCGGGAGTGG
TGTGTTGAACGGCAATGGACAGAAATGGTATGATGAGTTTGCGGGGAAGC
AGATCTTGATGTACCTCCTTCCCTTGACGCTCTTCCTCACCGCCGCTTTC
GGCGTCTCAATCCCTAGATCTCCCCTCATCCCCGGCGCACAAATCGTCCC
CGCATCCAGCACAGCAGATCTACGAGCCATTGGTGCTCAACATCACAAGT
ATCCAGACCGAGAGACAGTTACTATTCGGGCCTCGAGGAACGCCCTCGAC
GATGTGTCCAGTGACTTCCTCTGGGGCTTGAAGCAGGCGAACCATGGCGG
TCGGTTGTTGTTGAAGCAGGGGGAGACCTACGTGATTGGGAAGAAGTTAG
ATTTGACATTCTTGGATAATATTGAGGTGCAGCTTGAGGGAGAAATTCAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0005975 | carbohydrate metabolic process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004650 | polygalacturonase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | SECRETED:SignalP(1-15) |
| Note | CAZy:GH28 |
| DBxref | InterPro:IPR011050 |
| DBxref | InterPro:IPR012334 |
| DBxref | InterPro:IPR000743 |
| DBxref | PFAM:PF00295 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An03 | supercontig | An03:1529427..1531002 - |
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