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Sequences
The following sequences are available for this feature:
mRNA from alignment at An04:390980..392260+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_003071-T1 ID=CBS51388_003071-T1|Name=CBS51388_003071-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1281bp|location=Sequence derived from alignment at An04:390980..392260+ (Aspergillus niger CBS 513.88)
ATGGCTGCCTCCGCTGACAGTCAGGTCTTCCGGGCCACCACCACCGCCCC
CGTCAACATCGCCGTCATCAAGTATGTTCCCCCTCCACACTCACCGATAG
TACGTACGCTTGGTGGATTCTAATCGTTACTGAAAAGGTACTGGGGCAAG
CGCGATGCTGTTCTCAACCTTCCTACCAACTCCTCTCTCTCCGTCACCCT
TTCGCAGCGTTCCCTCCGCACGCTCACCACCGCTTCCTGCGCTCCTTTCT
ACCCCGCCAAGGACGAGCTCACCCTGAACGGCAAGCCCCAAGACATCCAA
TCCTCTAAGCGTACACTTGCTTGTCTGGCCAGCCTGCGCGCCCACCGTCG
CGAGCTCGAGGATGCAAACCCCTCGTTGCCCAAGCTGTCCAGCTTCCCTC
TTCGCATTGTTTCCGAGAACAACTTCCCCACCGCCGCCGGTCTCGCCAGT
TCGGCTGCCGGGTTTGCGGCCCTCGTTCGTGCCGTGGCAGACCTTTACCA
GCTGCCCCAGTCGCCCCGTGATCTGAGCCGCATCGCTCGTCAGGGCTCTG
GTTCCGCCTGCCGTTCTCTGATGGGTGGTTATGTCGCCTGGCGCGCTGGA
TCCTTGGAGGATGGAAGCGACAGTTTGGCAGAGGAGGTTGCGCCGCAGTC
TCACTGGCCTGAAATGCGTGCCCTCATCCTGGTTGTCAGTGCCGCAAAGA
AGGATGTCCCCAGCACTGAGGGTATGCAGACGACCGTCGCTACCTCGAAC
CTTTTTGCTACCCGCGCGAGCACTGTTGTTCCGGAGCGGATGGCTGCCAT
CGAGACCGCCATCCAGAACCGCGATTTCCCCGCCTTCGCAGAGATCACGA
TGCGCGACTCCAACAGCTTCCACGCCACTTGCTTGGACTCCTGGCCTCCG
ATCTTCTACATGAACGACGTCTCTCGCGCTGCCGTCAGACTCGTCCATGA
TATTAACCGCGCAATCGGCCGGACCGTCTGCGCGTACACCTACGATGCGG
GCCCGAACGCTGTCATCTACTACCTTGAGAAGGATACCGAGCTTGTTGCC
GGTACCGTCAAGGCTATCCTTGGTGAGAAGACGGAGGGCTGGGAAGGTCC
CTTCTACACGCCTCTGAAGGACGTTACCACCCCCGGCGTGTCCCTGGATG
AGATCGACCCCCGCACCGTGGAGTCGCTCAAGGATGGCGTGAGCCGTGTG
ATCTTGACCGGTGTTGGCGAGGGCCCCATCTCAGTGGACCAGCATCTTGT
CAGTGAGAAGGGCGATATTCTTTCTGCCTAG back to topCoding sequence (CDS) from alignment at An04:390980..392260+ >CBS51388_003071-T1 ID=CBS51388_003071-T1|Name=CBS51388_003071-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=2430bp|location=Sequence derived from alignment at An04:390980..392260+ (Aspergillus niger CBS 513.88)
ATGGCTGCCTCCGCTGACAGTCAGGTCTTCCGGGCCACCACCACCGCCCC
CGTCAACATCGCCGTCATCAAGTACTGGGGCAAGCGCGATGCTGTTCTCA
ACCTTCCTACCAACTCCTCTCTCTCCGTCACCCTTTCGCAGCGTTCCCTC
CGCACGCTCACCACCGCTTCCTGCGCTCCTTTCTACCCCGCCAAGGACGA
GCTCACCCTGAACGGCAAGCCCCAAGACATCCAATCCTCTAAGCGTACAC
TTGCTTGTCTGGCCAGCCTGCGCGCCCACCGTCGCGAGCTCGAGGATGCA
AACCCCTCGTTGCCCAAGCTGTCCAGCTTCCCTCTTCGCATTGTTTCCGA
GAACAACTTCCCCACCGCCGCCGGTCTCGCCAGTTCGGCTGCCGGGTTTG
CGGCCCTCGTTCGTGCCGTGGCAGACCTTTACCAGCTGCCCCAGTCGCCC
CGTGATCTGAGCCGCATCGCTCGTCAGGGCTCTGGTTCCGCCTGCCGTTC
TCTGATGGGTGGTTATGTCGCCTGGCGCGCTGGATCCTTGGAGGATGGAA
GCGACAGTTTGGCAGAGGAGGTTGCGCCGCAGTCTCACTGGCCTGAAATG
CGTGCCCTCATCCTGGTTGTCAGTGCCGCAAAGAAGGATGTCCCCAGCAC
TGAGGGTATGCAGACGACCGTCGCTACCTCGAACCTTTTTGCTACCCGCG
CGAGCACTGTTGTTCCGGAGCGGATGGCTGCCATCGAGACCGCCATCCAG
AACCGCGATTTCCCCGCCTTCGCAGAGATCACGATGCGCGACTCCAACAG
CTTCCACGCCACTTGCTTGGACTCCTGGCCTCCGATCTTCTACATGAACG
ACGTCTCTCGCGCTGCCGTCAGACTCGTCCATGATATTAACCGCGCAATC
GGCCGGACCGTCTGCGCGTACACCTACGATGCGGGCCCGAACGCTGTCAT
CTACTACCTTGAGAAGGATACCGAGCTTGTTGCCGGTACCGTCAAGGCTA
TCCTTGGTGAGAAGACGGAGGGCTGGGAAGGTCCCTTCTACACGCCTCTG
AAGGACGTTACCACCCCCGGCGTGTCCCTGGATGAGATCGACCCCCGCAC
CGTGGAGTCGCTCAAGGATGGCGTGAGCCGTGTGATCTTGACCGGTGTTG
GCGAGGGCCCCATCTCAGTGGACCAGCATCTTGTCAGTGAGAAGGGCGAT
ATTCTTTCTGCCTAGATGGCTGCCTCCGCTGACAGTCAGGTCTTCCGGGC
CACCACCACCGCCCCCGTCAACATCGCCGTCATCAAGTACTGGGGCAAGC
GCGATGCTGTTCTCAACCTTCCTACCAACTCCTCTCTCTCCGTCACCCTT
TCGCAGCGTTCCCTCCGCACGCTCACCACCGCTTCCTGCGCTCCTTTCTA
CCCCGCCAAGGACGAGCTCACCCTGAACGGCAAGCCCCAAGACATCCAAT
CCTCTAAGCGTACACTTGCTTGTCTGGCCAGCCTGCGCGCCCACCGTCGC
GAGCTCGAGGATGCAAACCCCTCGTTGCCCAAGCTGTCCAGCTTCCCTCT
TCGCATTGTTTCCGAGAACAACTTCCCCACCGCCGCCGGTCTCGCCAGTT
CGGCTGCCGGGTTTGCGGCCCTCGTTCGTGCCGTGGCAGACCTTTACCAG
CTGCCCCAGTCGCCCCGTGATCTGAGCCGCATCGCTCGTCAGGGCTCTGG
TTCCGCCTGCCGTTCTCTGATGGGTGGTTATGTCGCCTGGCGCGCTGGAT
CCTTGGAGGATGGAAGCGACAGTTTGGCAGAGGAGGTTGCGCCGCAGTCT
CACTGGCCTGAAATGCGTGCCCTCATCCTGGTTGTCAGTGCCGCAAAGAA
GGATGTCCCCAGCACTGAGGGTATGCAGACGACCGTCGCTACCTCGAACC
TTTTTGCTACCCGCGCGAGCACTGTTGTTCCGGAGCGGATGGCTGCCATC
GAGACCGCCATCCAGAACCGCGATTTCCCCGCCTTCGCAGAGATCACGAT
GCGCGACTCCAACAGCTTCCACGCCACTTGCTTGGACTCCTGGCCTCCGA
TCTTCTACATGAACGACGTCTCTCGCGCTGCCGTCAGACTCGTCCATGAT
ATTAACCGCGCAATCGGCCGGACCGTCTGCGCGTACACCTACGATGCGGG
CCCGAACGCTGTCATCTACTACCTTGAGAAGGATACCGAGCTTGTTGCCG
GTACCGTCAAGGCTATCCTTGGTGAGAAGACGGAGGGCTGGGAAGGTCCC
TTCTACACGCCTCTGAAGGACGTTACCACCCCCGGCGTGTCCCTGGATGA
GATCGACCCCCGCACCGTGGAGTCGCTCAAGGATGGCGTGAGCCGTGTGA
TCTTGACCGGTGTTGGCGAGGGCCCCATCTCAGTGGACCAGCATCTTGTC
AGTGAGAAGGGCGATATTCTTTCTGCCTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005829 | cytosol |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005524 | ATP binding |
| GO:0004163 | diphosphomevalonate decarboxylase activity |
| GO:0016831 | carboxy-lyase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0019287 | isopentenyl diphosphate biosynthetic process, mevalonate pathway |
| GO:0008299 | isoprenoid biosynthetic process |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09263BG5 |
| DBxref | InterPro:IPR020568 |
| DBxref | InterPro:IPR006204 |
| DBxref | InterPro:IPR036554 |
| DBxref | InterPro:IPR014721 |
| DBxref | InterPro:IPR041431 |
| DBxref | InterPro:IPR029765 |
| DBxref | InterPro:IPR005935 |
| DBxref | PFAM:PF18376 |
| DBxref | PFAM:PF00288 |
| Product | hypothetical protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An04 | supercontig | An04:390980..392260 + |
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