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Sequences
The following sequences are available for this feature:
mRNA from alignment at An04:422606..423483+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_003081-T1 ID=CBS51388_003081-T1|Name=CBS51388_003081-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=878bp|location=Sequence derived from alignment at An04:422606..423483+ (Aspergillus niger CBS 513.88)
ATGGGCAAATATAACCTCACGGCCCTCCGGGTTCGCCAAATCGCTGTGGC
ACAGCAATCCGCCGGCAAACTTCGTCAAACACCCAAATGGCTTGATATAA
TGCACGATGTCCCCCCCACTGAGGTCCTGGTGCGGAACCGACCTCAACAA
CACCAATTGGTTCGCCAGCGCCTGAAGACTGTTCCTGGCGCATCGAGGCC
GCAGGCCGTCTTCGAAGTCCAGGAGAAACGCATCAAGCCGAAGAAGGCAA
GCCGCATGTTCCAGCCTGTCGAAATCAAATACGAGGAGGATCAACTGCGC
AAGGAATTTTTCCGCGACCATCCTTGGGAGCTTGCCCGACCCCGTGTGCT
TGTCGAAAAGTCCGGCAAGGACTTTGAGAGATATAACTGGAGCCGGCTCC
AGCAGCGGGGAAAGCACTTGGATGGTGAGAGGTATGTCTAGTGTCCTCGA
TCTGTAGGCGGGAGGATCTCGCCAATAATTAGATATTTGATGCTAACTCC
CCCGGTTTCCGGTGAAATAGCGTTGTTCAGCGACAGCTTTGGCTCCTTAA
TAATGTCCCCGATATGACCAAGAGCGCCGCTTACGATATTGCACGCCGCG
AGTTCTACCGCCTCCGTCTACAGGAAGACATTGAACGACGTGTTGCTGCT
GAGGAAGCCGAAGCTACTGGTGCTGTGTTCGGACCGACACGTCTACAGAT
CGGTATGGACCTCGAGAACAAGGAGTATGAGCGTTGGAAGGAATGGGCCA
AGTTGCAGGCCCAGCTTTCGGACCAGAGAATGGCTGCGTTCCTTGGGGCT
CCGGAAGTCCAAGCTGCTGAGGAGCAAGAGACGAGCTTGGATGATGACGC
CACGGAAAAGGTTGCGGTAGCAGCCTGA back to topCoding sequence (CDS) from alignment at An04:422606..423483+ >CBS51388_003081-T1 ID=CBS51388_003081-T1|Name=CBS51388_003081-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1578bp|location=Sequence derived from alignment at An04:422606..423483+ (Aspergillus niger CBS 513.88)
ATGGGCAAATATAACCTCACGGCCCTCCGGGTTCGCCAAATCGCTGTGGC
ACAGCAATCCGCCGGCAAACTTCGTCAAACACCCAAATGGCTTGATATAA
TGCACGATGTCCCCCCCACTGAGGTCCTGGTGCGGAACCGACCTCAACAA
CACCAATTGGTTCGCCAGCGCCTGAAGACTGTTCCTGGCGCATCGAGGCC
GCAGGCCGTCTTCGAAGTCCAGGAGAAACGCATCAAGCCGAAGAAGGCAA
GCCGCATGTTCCAGCCTGTCGAAATCAAATACGAGGAGGATCAACTGCGC
AAGGAATTTTTCCGCGACCATCCTTGGGAGCTTGCCCGACCCCGTGTGCT
TGTCGAAAAGTCCGGCAAGGACTTTGAGAGATATAACTGGAGCCGGCTCC
AGCAGCGGGGAAAGCACTTGGATGGTGAGAGCGTTGTTCAGCGACAGCTT
TGGCTCCTTAATAATGTCCCCGATATGACCAAGAGCGCCGCTTACGATAT
TGCACGCCGCGAGTTCTACCGCCTCCGTCTACAGGAAGACATTGAACGAC
GTGTTGCTGCTGAGGAAGCCGAAGCTACTGGTGCTGTGTTCGGACCGACA
CGTCTACAGATCGGTATGGACCTCGAGAACAAGGAGTATGAGCGTTGGAA
GGAATGGGCCAAGTTGCAGGCCCAGCTTTCGGACCAGAGAATGGCTGCGT
TCCTTGGGGCTCCGGAAGTCCAAGCTGCTGAGGAGCAAGAGACGAGCTTG
GATGATGACGCCACGGAAAAGGTTGCGGTAGCAGCCTGAATGGGCAAATA
TAACCTCACGGCCCTCCGGGTTCGCCAAATCGCTGTGGCACAGCAATCCG
CCGGCAAACTTCGTCAAACACCCAAATGGCTTGATATAATGCACGATGTC
CCCCCCACTGAGGTCCTGGTGCGGAACCGACCTCAACAACACCAATTGGT
TCGCCAGCGCCTGAAGACTGTTCCTGGCGCATCGAGGCCGCAGGCCGTCT
TCGAAGTCCAGGAGAAACGCATCAAGCCGAAGAAGGCAAGCCGCATGTTC
CAGCCTGTCGAAATCAAATACGAGGAGGATCAACTGCGCAAGGAATTTTT
CCGCGACCATCCTTGGGAGCTTGCCCGACCCCGTGTGCTTGTCGAAAAGT
CCGGCAAGGACTTTGAGAGATATAACTGGAGCCGGCTCCAGCAGCGGGGA
AAGCACTTGGATGGTGAGAGCGTTGTTCAGCGACAGCTTTGGCTCCTTAA
TAATGTCCCCGATATGACCAAGAGCGCCGCTTACGATATTGCACGCCGCG
AGTTCTACCGCCTCCGTCTACAGGAAGACATTGAACGACGTGTTGCTGCT
GAGGAAGCCGAAGCTACTGGTGCTGTGTTCGGACCGACACGTCTACAGAT
CGGTATGGACCTCGAGAACAAGGAGTATGAGCGTTGGAAGGAATGGGCCA
AGTTGCAGGCCCAGCTTTCGGACCAGAGAATGGCTGCGTTCCTTGGGGCT
CCGGAAGTCCAAGCTGCTGAGGAGCAAGAGACGAGCTTGGATGATGACGC
CACGGAAAAGGTTGCGGTAGCAGCCTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005763 | mitochondrial small ribosomal subunit |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264X41 |
| DBxref | InterPro:IPR016939 |
| DBxref | PFAM:PF13741 |
| Product | mitochondrial ribosomal small subunit component |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An04 | supercontig | An04:422606..423483 + |
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