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Sequences
The following sequences are available for this feature:
mRNA from alignment at An04:502914..504560- Legend: CDSpolypeptideexon Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_003107-T1 ID=CBS51388_003107-T1|Name=CBS51388_003107-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1647bp|location=Sequence derived from alignment at An04:502914..504560- (Aspergillus niger CBS 513.88)
ATGTCGTCCTCACAATCGCCGCAGAACAGCAATGCGGACTCCAGTTCCTC
AGCGAAGCCATTCTCTCTATCATTAGGCGGAAACTCCACGAAAGCACCAG
CAAACGGCCAGCCGAAGAAAACGTCCTTCAACATTCAAGGCGCGGCGCGT
TCCACCGACTCACCCAGCCGAACACTCGCGCGCCGACCTCACCACCTGCA
CGATGACGAAGAATCCGATGAAGAAGCCGCGCCCACTCATGAAGCCGTCA
CCGGGTTCGACACCTTAACGGGAACGGCTATTCCCGCCAACAAGGTGGAA
GAAAAGCGCGAGCTGATCATTCCCGTCGCTGGAAATAATAATTGGAGGGA
CCGTCCGGGCGTCAATCTCCGGAAACCTAAGGGCAAGAACCTCTTGCCAA
AGGAGGTCCAGGCCATTCAGGAAGCTCAGAAACGGGGTGAAGTTGCTGGA
GATAATGTTGAGACAGAGCGTCCGAGTATGGCTTATGGGTTGAGTTTTGC
GCAGCCGGCTTCGCAGGATTCGGCCCAGGCGGCGGATAATGATCGCCCGA
TGAAGGATGTTACTGAGCCTGCTGCTACTCCTGCTGCCGAGGTAGAACGC
AAGCCACTCACGCAGGATGAGATTGCCTTGCAGGCGCTTATTCGAGAGAC
GAAGGGGGAGCCGGAGCGCAGGTCGGATCTTGTTATTGAGTCGGTTAATC
GAGATGACGATGATCGGGCGGGCGGGCGATATGATGAGACGTCTTCTTTT
CGAGCGGATGTTGCGGCGCGCCCGGAGTCTGCGAGCTTGGATCAGTATAA
CGCAATCCCTGTTGAGGAGTTTGGCGCTGCGCTACTTCGTGGTATGGGGT
GGAAGGAGGGTCAAGCTGTAGGAAGAGGAAAATACGGTGGTTCTGCAAAT
CAGGACAATAAGCCGCGGGTCCCGGAGCGTCGTCCTGGGTTCCTGGGGAT
CGGAGCGAAAGATGTGTCTGGGGGGAAGGGTGCAGAGGCCGAGCTCGGTG
CATGGGGCAAGGCTGCCATGCGGAAAGGGTCCAGGAAGGGAGGGAAGGAG
GGCGAGTCCAATCCGGAAGGTGTATATATGCCCATCATGATGCGAAACAA
GCAGACCGGCGAGTTCATAACAGAAGAGGAGCTCGCGGCGCAACGGAAAG
AGGCCAGGAAACGGGGCGACGATGACGAATGGAAGCAACGACGAGATCGC
AATTTGGAGAAGAGTGGCCGTGATAGGGATCGTGATCGTGACTCACGGCG
TCGCGACTACGATGACGATGAAACTGATCGCTATGACAGACGGAGGACCG
GATCTTCAAGGAGAGACCGGAGTTTGTCATCCAGTGACCGGCATTCAAGA
CGGCGCAGATACGAAGATGAAGATAGCGACAGTCGTGATGACCGCTACTA
CCGGGACAGAGACCGTGACCGGGATCGTGACTATCGCCGGGATCGTGATC
GAAATGGAGATCGGGAACGAGAGCGTGACAGGGACAGAGATCGGGATCGG
GACCGCAGCAGACGGTATCGTGATGATGATCGCCATAGTAGCTCAAGGCA
TTCTTCGTCGCATACATCGAGTAGACATCGTGACCGGGATAGGGAGCGAG
ACAGTGATCGCGACTCCCGCCGGAGAAGGAGAGACGAGGATCGATGA back to topCoding sequence (CDS) from alignment at An04:502914..504560- >CBS51388_003107-T1 ID=CBS51388_003107-T1|Name=CBS51388_003107-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1647bp|location=Sequence derived from alignment at An04:502914..504560- (Aspergillus niger CBS 513.88)
ATGTCGTCCTCACAATCGCCGCAGAACAGCAATGCGGACTCCAGTTCCTC
AGCGAAGCCATTCTCTCTATCATTAGGCGGAAACTCCACGAAAGCACCAG
CAAACGGCCAGCCGAAGAAAACGTCCTTCAACATTCAAGGCGCGGCGCGT
TCCACCGACTCACCCAGCCGAACACTCGCGCGCCGACCTCACCACCTGCA
CGATGACGAAGAATCCGATGAAGAAGCCGCGCCCACTCATGAAGCCGTCA
CCGGGTTCGACACCTTAACGGGAACGGCTATTCCCGCCAACAAGGTGGAA
GAAAAGCGCGAGCTGATCATTCCCGTCGCTGGAAATAATAATTGGAGGGA
CCGTCCGGGCGTCAATCTCCGGAAACCTAAGGGCAAGAACCTCTTGCCAA
AGGAGGTCCAGGCCATTCAGGAAGCTCAGAAACGGGGTGAAGTTGCTGGA
GATAATGTTGAGACAGAGCGTCCGAGTATGGCTTATGGGTTGAGTTTTGC
GCAGCCGGCTTCGCAGGATTCGGCCCAGGCGGCGGATAATGATCGCCCGA
TGAAGGATGTTACTGAGCCTGCTGCTACTCCTGCTGCCGAGGTAGAACGC
AAGCCACTCACGCAGGATGAGATTGCCTTGCAGGCGCTTATTCGAGAGAC
GAAGGGGGAGCCGGAGCGCAGGTCGGATCTTGTTATTGAGTCGGTTAATC
GAGATGACGATGATCGGGCGGGCGGGCGATATGATGAGACGTCTTCTTTT
CGAGCGGATGTTGCGGCGCGCCCGGAGTCTGCGAGCTTGGATCAGTATAA
CGCAATCCCTGTTGAGGAGTTTGGCGCTGCGCTACTTCGTGGTATGGGGT
GGAAGGAGGGTCAAGCTGTAGGAAGAGGAAAATACGGTGGTTCTGCAAAT
CAGGACAATAAGCCGCGGGTCCCGGAGCGTCGTCCTGGGTTCCTGGGGAT
CGGAGCGAAAGATGTGTCTGGGGGGAAGGGTGCAGAGGCCGAGCTCGGTG
CATGGGGCAAGGCTGCCATGCGGAAAGGGTCCAGGAAGGGAGGGAAGGAG
GGCGAGTCCAATCCGGAAGGTGTATATATGCCCATCATGATGCGAAACAA
GCAGACCGGCGAGTTCATAACAGAAGAGGAGCTCGCGGCGCAACGGAAAG
AGGCCAGGAAACGGGGCGACGATGACGAATGGAAGCAACGACGAGATCGC
AATTTGGAGAAGAGTGGCCGTGATAGGGATCGTGATCGTGACTCACGGCG
TCGCGACTACGATGACGATGAAACTGATCGCTATGACAGACGGAGGACCG
GATCTTCAAGGAGAGACCGGAGTTTGTCATCCAGTGACCGGCATTCAAGA
CGGCGCAGATACGAAGATGAAGATAGCGACAGTCGTGATGACCGCTACTA
CCGGGACAGAGACCGTGACCGGGATCGTGACTATCGCCGGGATCGTGATC
GAAATGGAGATCGGGAACGAGAGCGTGACAGGGACAGAGATCGGGATCGG
GACCGCAGCAGACGGTATCGTGATGATGATCGCCATAGTAGCTCAAGGCA
TTCTTCGTCGCATACATCGAGTAGACATCGTGACCGGGATAGGGAGCGAG
ACAGTGATCGCGACTCCCGCCGGAGAAGGAGAGACGAGGATCGATGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR000467 |
| DBxref | InterPro:IPR026822 |
| DBxref | PFAM:PF12656 |
| Product | Pre-mRNA-splicing factor spp2 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An04 | supercontig | An04:502914..504560 - |
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