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Sequences
The following sequences are available for this feature:
mRNA from alignment at An04:566514..567270- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_003127-T1 ID=CBS51388_003127-T1|Name=CBS51388_003127-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=757bp|location=Sequence derived from alignment at An04:566514..567270- (Aspergillus niger CBS 513.88)
ATGCAGTCGGAATCCAAGGACAAGTCCGCCAACCCTATGCGCGAGCTGCG
CATCCAGAAGCTCGTGCTCAACATCTCCGTCGGCGAGTCTGGTGACAGAC
TTACTCGCGCTGCTAAGGTGCTTGAGCAGCTGAGCGGTCAGACTCCGGTC
TACAGTAAGAACGCCCGATCCCGATGAATCCGAGAAATCCGAACACGAAG
CAGCCGAGGAAGAAGGATATGACAACTGTATTATGGAATGGATGGCTGAT
GGGATGATTTTTTCAACGTTTAGGCAAGGCCCGTTATACCGTCCGTACCT
TCGGTATCCGTCGTAACGAGAAGATCTCCGTCCACGTTACCGTCCGTGGT
CCCAAGGCCGAGGAGATCCTTGAGCGTGGTCTCAAGGTCAAGGAGTACGA
GCTCCGCAAGCGCAACTTCTCTGAGACCGGTAACTTCGGTTTCGGTATCT
CCGAGCACATCGATCTGGGTATCAAGTACGACCCCGGTATCGGTATCTAC
GGCATGGACTTCTACTGCTGCATGTGAGTGCATTTGGACCTCTACGCAGT
CCTGGTTCGACAGATCCATCGGTGTCAATCCAGATCGAGCAGGACAAGTC
GAGTATCAGCAACTGACTTGGAATCAATAGGACCCGCCCTGGTGAGCGTG
TCGCCAAGCGCCGCCGCTGCAAGGCCCGTATCGGCTCCCAGCACCGTATC
ACCCAGAACGAGACCATCAAGTGGTTCAAGAACCGCTTCGACGGTATCGT
CCGGTAA back to topCoding sequence (CDS) from alignment at An04:566514..567270- >CBS51388_003127-T1 ID=CBS51388_003127-T1|Name=CBS51388_003127-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1593bp|location=Sequence derived from alignment at An04:566514..567270- (Aspergillus niger CBS 513.88)
GACCCGCCCTGGTGAGCGTGTCGCCAAGCGCCGCCGCTGCAAGGCCCGTA
TCGGCTCCCAGCACCGTATCACCCAGAACGAGACCATCAAGTGGTTCAAG
AACCGCTTCGACGGTATCGTCCGGTAAGCAAGGCCCGTTATACCGTCCGT
ACCTTCGGTATCCGTCGTAACGAGAAGATCTCCGTCCACGTTACCGTCCG
TGGTCCCAAGGCCGAGGAGATCCTTGAGCGTGGTCTCAAGGTCAAGGAGT
ACGAGCTCCGCAAGCGCAACTTCTCTGAGACCGGTAACTTCGGTTTCGGT
ATCTCCGAGCACATCGATCTGGGTATCAAGTACGACCCCGGTATCGGTAT
CTACGGCATGGACTTCTACTGCTGCATATGCAGTCGGAATCCAAGGACAA
GTCCGCCAACCCTATGCGCGAGCTGCGCATCCAGAAGCTCGTGCTCAACA
TCTCCGTCGGCGAGTCTGGTGACAGACTTACTCGCGCTGCTAAGGTGCTT
GAGCAGCTGAGCGGTCAGACTCCGGTCTACAGACCCGCCCTGGTGAGCGT
GTCGCCAAGCGCCGCCGCTGCAAGGCCCGTATCGGCTCCCAGCACCGTAT
CACCCAGAACGAGACCATCAAGTGGTTCAAGAACCGCTTCGACGGTATCG
TCCGGTAAGCAAGGCCCGTTATACCGTCCGTACCTTCGGTATCCGTCGTA
ACGAGAAGATCTCCGTCCACGTTACCGTCCGTGGTCCCAAGGCCGAGGAG
ATCCTTGAGCGTGGTCTCAAGGTCAAGGAGTACGAGCTCCGCAAGCGCAA
CTTCTCTGAGACCGGTAACTTCGGTTTCGGTATCTCCGAGCACATCGATC
TGGGTATCAAGTACGACCCCGGTATCGGTATCTACGGCATGGACTTCTAC
TGCTGCATATGCAGTCGGAATCCAAGGACAAGTCCGCCAACCCTATGCGC
GAGCTGCGCATCCAGAAGCTCGTGCTCAACATCTCCGTCGGCGAGTCTGG
TGACAGACTTACTCGCGCTGCTAAGGTGCTTGAGCAGCTGAGCGGTCAGA
CTCCGGTCTACAGACCCGCCCTGGTGAGCGTGTCGCCAAGCGCCGCCGCT
GCAAGGCCCGTATCGGCTCCCAGCACCGTATCACCCAGAACGAGACCATC
AAGTGGTTCAAGAACCGCTTCGACGGTATCGTCCGGTAAGCAAGGCCCGT
TATACCGTCCGTACCTTCGGTATCCGTCGTAACGAGAAGATCTCCGTCCA
CGTTACCGTCCGTGGTCCCAAGGCCGAGGAGATCCTTGAGCGTGGTCTCA
AGGTCAAGGAGTACGAGCTCCGCAAGCGCAACTTCTCTGAGACCGGTAAC
TTCGGTTTCGGTATCTCCGAGCACATCGATCTGGGTATCAAGTACGACCC
CGGTATCGGTATCTACGGCATGGACTTCTACTGCTGCATATGCAGTCGGA
ATCCAAGGACAAGTCCGCCAACCCTATGCGCGAGCTGCGCATCCAGAAGC
TCGTGCTCAACATCTCCGTCGGCGAGTCTGGTGACAGACTTACTCGCGCT
GCTAAGGTGCTTGAGCAGCTGAGCGGTCAGACTCCGGTCTACA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264X8J |
| DBxref | InterPro:IPR020929 |
| DBxref | InterPro:IPR022803 |
| DBxref | InterPro:IPR031310 |
| DBxref | InterPro:IPR031309 |
| DBxref | InterPro:IPR002132 |
| DBxref | PFAM:PF00673 |
| DBxref | PFAM:PF00281 |
| Product | 60S ribosomal protein L11 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An04 | supercontig | An04:566514..567270 - |
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