You are here

Home

CBS51388_003500-T1, CBS51388_003500-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_003500-T1
Unique NameCBS51388_003500-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An04:1746381..1747271-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_003500-T1 ID=CBS51388_003500-T1|Name=CBS51388_003500-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=891bp|location=Sequence derived from alignment at An04:1746381..1747271- (Aspergillus niger CBS 513.88)
ATGGTATGTGCCTTCTTCCTCGCTGTCCCGGCCAGTTGTGTTGAAAATCC
CCCACTTTGCGGGGCAGATCTGCCTGGCATTCTCAACAGGATTGCTGACA
TCGCATCGTCTAGGCCGACTCTCTGACCGAAGAGCAAGTTTCTGAGTACA
AGGAGGCCTTCTCCCTCTTTGTGAGTGCTCCCTGAATGACCCTCCGATCA
TCCTGATCGATGAGCTATCTTTACCGGAGCATAATGCTAATGTGTTTTCG
GACTTAATAGGACAAGGATGGCGATGGTGGGTGGAATTCTATCCCCTTCA
CATTATACCTGTAGCGCTCGATCCGACTGCGGGATTTCGACAGCATTTTC
CAGAACGATTTGGATCATAATACTAATTTAAATCGGTGAATCAGGCCAGA
TCACCACCAAGGAGCTCGGCACTGTGATGCGCTCCCTTGGCCAGAACCCC
TCCGAGTCTGAGCTTCAGGACATGATCAACGAGGTTGACGCTGACAACAA
CGGAACGATCGACTTCCCCGGTATGTGTTAGATTTACGCCTGTAAGGCGG
AAATGCGGGCTGGATTGTGATTGACTTTTGCCGCCAGAATTCCTTACCAT
GATGGCTCGTAAGATGAAGGACACCGACTCCGAGGAGGAAATCCGCGAGG
CTTTCAAGGTCTTCGACCGCGACAACAATGGTTTTATCTCCGCCGCGGAG
CTGCGCCACGTCATGACCTCCATTGGCGAGAAGCTCACCGACGACGAAGT
CGATGAGATGATCCGTGAGGCGGACCAGGACGGTGATGGCCGCATCGACT
GTATGTTTACCATGCCCGATTATACTCATAACATAACATACTGACTCTGC
TACCAGACAACGAGTTCGTCCAGCTCATGATGCAAAAATAA
back to top

Coding sequence (CDS) from alignment at An04:1746381..1747271-

>CBS51388_003500-T1 ID=CBS51388_003500-T1|Name=CBS51388_003500-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=2700bp|location=Sequence derived from alignment at An04:1746381..1747271- (Aspergillus niger CBS 513.88)
ACAACGAGTTCGTCCAGCTCATGATGCAAAAATAAAATTCCTTACCATGA
TGGCTCGTAAGATGAAGGACACCGACTCCGAGGAGGAAATCCGCGAGGCT
TTCAAGGTCTTCGACCGCGACAACAATGGTTTTATCTCCGCCGCGGAGCT
GCGCCACGTCATGACCTCCATTGGCGAGAAGCTCACCGACGACGAAGTCG
ATGAGATGATCCGTGAGGCGGACCAGGACGGTGATGGCCGCATCGACTGC
CAGATCACCACCAAGGAGCTCGGCACTGTGATGCGCTCCCTTGGCCAGAA
CCCCTCCGAGTCTGAGCTTCAGGACATGATCAACGAGGTTGACGCTGACA
ACAACGGAACGATCGACTTCCCCGGACAAGGATGGCGATGGCCGACTCTC
TGACCGAAGAGCAAGTTTCTGAGTACAAGGAGGCCTTCTCCCTCTTTATG
ACAACGAGTTCGTCCAGCTCATGATGCAAAAATAAAATTCCTTACCATGA
TGGCTCGTAAGATGAAGGACACCGACTCCGAGGAGGAAATCCGCGAGGCT
TTCAAGGTCTTCGACCGCGACAACAATGGTTTTATCTCCGCCGCGGAGCT
GCGCCACGTCATGACCTCCATTGGCGAGAAGCTCACCGACGACGAAGTCG
ATGAGATGATCCGTGAGGCGGACCAGGACGGTGATGGCCGCATCGACTGC
CAGATCACCACCAAGGAGCTCGGCACTGTGATGCGCTCCCTTGGCCAGAA
CCCCTCCGAGTCTGAGCTTCAGGACATGATCAACGAGGTTGACGCTGACA
ACAACGGAACGATCGACTTCCCCGGACAAGGATGGCGATGGCCGACTCTC
TGACCGAAGAGCAAGTTTCTGAGTACAAGGAGGCCTTCTCCCTCTTTATG
ACAACGAGTTCGTCCAGCTCATGATGCAAAAATAAAATTCCTTACCATGA
TGGCTCGTAAGATGAAGGACACCGACTCCGAGGAGGAAATCCGCGAGGCT
TTCAAGGTCTTCGACCGCGACAACAATGGTTTTATCTCCGCCGCGGAGCT
GCGCCACGTCATGACCTCCATTGGCGAGAAGCTCACCGACGACGAAGTCG
ATGAGATGATCCGTGAGGCGGACCAGGACGGTGATGGCCGCATCGACTGC
CAGATCACCACCAAGGAGCTCGGCACTGTGATGCGCTCCCTTGGCCAGAA
CCCCTCCGAGTCTGAGCTTCAGGACATGATCAACGAGGTTGACGCTGACA
ACAACGGAACGATCGACTTCCCCGGACAAGGATGGCGATGGCCGACTCTC
TGACCGAAGAGCAAGTTTCTGAGTACAAGGAGGCCTTCTCCCTCTTTATG
ACAACGAGTTCGTCCAGCTCATGATGCAAAAATAAAATTCCTTACCATGA
TGGCTCGTAAGATGAAGGACACCGACTCCGAGGAGGAAATCCGCGAGGCT
TTCAAGGTCTTCGACCGCGACAACAATGGTTTTATCTCCGCCGCGGAGCT
GCGCCACGTCATGACCTCCATTGGCGAGAAGCTCACCGACGACGAAGTCG
ATGAGATGATCCGTGAGGCGGACCAGGACGGTGATGGCCGCATCGACTGC
CAGATCACCACCAAGGAGCTCGGCACTGTGATGCGCTCCCTTGGCCAGAA
CCCCTCCGAGTCTGAGCTTCAGGACATGATCAACGAGGTTGACGCTGACA
ACAACGGAACGATCGACTTCCCCGGACAAGGATGGCGATGGCCGACTCTC
TGACCGAAGAGCAAGTTTCTGAGTACAAGGAGGCCTTCTCCCTCTTTATG
ACAACGAGTTCGTCCAGCTCATGATGCAAAAATAAAATTCCTTACCATGA
TGGCTCGTAAGATGAAGGACACCGACTCCGAGGAGGAAATCCGCGAGGCT
TTCAAGGTCTTCGACCGCGACAACAATGGTTTTATCTCCGCCGCGGAGCT
GCGCCACGTCATGACCTCCATTGGCGAGAAGCTCACCGACGACGAAGTCG
ATGAGATGATCCGTGAGGCGGACCAGGACGGTGATGGCCGCATCGACTGC
CAGATCACCACCAAGGAGCTCGGCACTGTGATGCGCTCCCTTGGCCAGAA
CCCCTCCGAGTCTGAGCTTCAGGACATGATCAACGAGGTTGACGCTGACA
ACAACGGAACGATCGACTTCCCCGGACAAGGATGGCGATGGCCGACTCTC
TGACCGAAGAGCAAGTTTCTGAGTACAAGGAGGCCTTCTCCCTCTTTATG
ACAACGAGTTCGTCCAGCTCATGATGCAAAAATAAAATTCCTTACCATGA
TGGCTCGTAAGATGAAGGACACCGACTCCGAGGAGGAAATCCGCGAGGCT
TTCAAGGTCTTCGACCGCGACAACAATGGTTTTATCTCCGCCGCGGAGCT
GCGCCACGTCATGACCTCCATTGGCGAGAAGCTCACCGACGACGAAGTCG
ATGAGATGATCCGTGAGGCGGACCAGGACGGTGATGGCCGCATCGACTGC
CAGATCACCACCAAGGAGCTCGGCACTGTGATGCGCTCCCTTGGCCAGAA
CCCCTCCGAGTCTGAGCTTCAGGACATGATCAACGAGGTTGACGCTGACA
ACAACGGAACGATCGACTTCCCCGGACAAGGATGGCGATGGCCGACTCTC
TGACCGAAGAGCAAGTTTCTGAGTACAAGGAGGCCTTCTCCCTCTTTATG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAM1CBS51388_003500Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_003500-T1CBS51388_003500-T1-proteinAspergillus niger CBS 513.88polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_003500-T1.cdsCBS51388_003500-T1.cdsAspergillus niger CBS 513.88CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_003500-T1.exon6CBS51388_003500-T1.exon6Aspergillus niger CBS 513.88exon
CBS51388_003500-T1.exon5CBS51388_003500-T1.exon5Aspergillus niger CBS 513.88exon
CBS51388_003500-T1.exon4CBS51388_003500-T1.exon4Aspergillus niger CBS 513.88exon
CBS51388_003500-T1.exon3CBS51388_003500-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_003500-T1.exon2CBS51388_003500-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_003500-T1.exon1CBS51388_003500-T1.exon1Aspergillus niger CBS 513.88exon


Properties
Property NameValue
DBxrefInterPro:IPR011992
DBxrefInterPro:IPR018247
DBxrefInterPro:IPR002048
DBxrefPFAM:PF08726
DBxrefPFAM:PF14658
DBxrefPFAM:PF13833
DBxrefPFAM:PF13499
DBxrefPFAM:PF13405
DBxrefPFAM:PF13202
DBxrefPFAM:PF00036
Producttranslation elongation factor EF1B gamma
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An04supercontigAn04:1746381..1747271 -
Powered by Drupal