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CBS51388_004707-T1, CBS51388_004707-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_004707-T1
Unique NameCBS51388_004707-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An07:1565920..1567277+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_004707-T1 ID=CBS51388_004707-T1|Name=CBS51388_004707-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1358bp|location=Sequence derived from alignment at An07:1565920..1567277+ (Aspergillus niger CBS 513.88)
ATGCGTCTCGTCAAGAACAAGATCGAGCACAATGGATCCGGAACGGTGAC
CTTGTGTCCTGAGGAGCCTGAGGACATGGTGCGGTATACTCTGTTCCTGG
TCGAGGGGTAGCTCTTTGTTTAACTAACGGCTTCAGTGGCACGCATACAA
CCTCATCCGACCGAACGATCTCCTCCGCGCCAGCGCTATTCGTCGTGTCA
CCACAACTCAAGAAACCGGTTCCACTACCTCAGCTCGAGTCCACTTGATG
CTCGAGATCCGTGTCAAGAACCTCGACTTCGATCCGCAGAGCTCGCAGCT
GCATGTTAGCGGGACTATTGTGAACGAGACGGCACATACGAAGATCGGAC
AGCACCATACACTTGATCTGGAGCTGAATCGGAATTTCACATTAGAAAAG
GAAGTTGGCGCGGACGGCGAGGGCGTCGGATGGGACAGTATCGCGGTGCA
GATGTTGAAGGATGCGGTGGATGAAGGGGGACAACGGAGGGCGGAGGCGG
TGGCCGTGGTGATGCAGGAAGGGTTGGCGCATATTTGCTTTATCGGACAG
TTTCAGACTATCCTAAAGCAGAAGATTGAGATGTCGGTGCCCAGGAAACG
ACATGGTGGGGGTGATCATGATAAGGTGGGTTGTACCATTATTGATAATC
CATCCCGGTGTTGGGGTTAGTGGTTTGTATGCTGACAGGTCTTCGTGGGA
AAAGGGCATGTCGAAATTCTTCCAGGTTACACTCGATACGCTGCTGCGCC
AGCTTGAATTCAACACCAGCTCGGCTTCACTCACCAGCAGCGAGACCGTT
CGGCCGGTTCTCCTTGCATCGCCAGGCTTCGTGGCCTCCGGCTTCCAAAA
GTACATCCAGTCGCAGGCATCCACTTCGACGCCGGCGCTTAAACGCCTCC
TACCCAGTATTGTGGTTGTACACTCTGCTTCCGGTTATCTGCACTCGTTA
GCGGAAGTCCTGCAGTCCCCAGCTGTGAAAACCATTCTTGCCGACACCAA
GTACGCGCGCGAGACAAAGCTCATGGACGACTTCCTCGACCAGCTCCGCA
AAGAAACCAACAAAGCGACGTATGGTCCGCGCGAGGTTGAATTCGCTGTC
GACCAGGGTGCCGTTGGCCGCGGTGGTGGCGTGCTGATCATCTCCAATCG
GCTGTTCAGGTCACAGGACGTGGCGGAGCGCAAACGCTGGGTATCGCTGG
TAGATCGGGTACGGGATGTCGAGGGTGGAGAGGTGCGAGTGCTCAGCTCC
GACCATGAGAGTGGAAGGCGACTTGATGGGCTAGGAGGGGTGGCAGCCCT
GTTGACGTTTCCTATATTGGATGAGGATATAGAAGGGGAGGGGGAGGTCG
AGCAATAG
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Coding sequence (CDS) from alignment at An07:1565920..1567277+

>CBS51388_004707-T1 ID=CBS51388_004707-T1|Name=CBS51388_004707-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=3663bp|location=Sequence derived from alignment at An07:1565920..1567277+ (Aspergillus niger CBS 513.88)
ATGCGTCTCGTCAAGAACAAGATCGAGCACAATGGATCCGGAACGGTGAC
CTTGTGTCCTGAGGAGCCTGAGGACATGTGGCACGCATACAACCTCATCC
GACCGAACGATCTCCTCCGCGCCAGCGCTATTCGTCGTGTCACCACAACT
CAAGAAACCGGTTCCACTACCTCAGCTCGAGTCCACTTGATGCTCGAGAT
CCGTGTCAAGAACCTCGACTTCGATCCGCAGAGCTCGCAGCTGCATGTTA
GCGGGACTATTGTGAACGAGACGGCACATACGAAGATCGGACAGCACCAT
ACACTTGATCTGGAGCTGAATCGGAATTTCACATTAGAAAAGGAAGTTGG
CGCGGACGGCGAGGGCGTCGGATGGGACAGTATCGCGGTGCAGATGTTGA
AGGATGCGGTGGATGAAGGGGGACAACGGAGGGCGGAGGCGGTGGCCGTG
GTGATGCAGGAAGGGTTGGCGCATATTTGCTTTATCGGACAGTTTCAGAC
TATCCTAAAGCAGAAGATTGAGATGTCGGTGCCCAGGAAACGACATGGTG
GGGGTGATCATGATAAGGGCATGTCGAAATTCTTCCAGGTTACACTCGAT
ACGCTGCTGCGCCAGCTTGAATTCAACACCAGCTCGGCTTCACTCACCAG
CAGCGAGACCGTTCGGCCGGTTCTCCTTGCATCGCCAGGCTTCGTGGCCT
CCGGCTTCCAAAAGTACATCCAGTCGCAGGCATCCACTTCGACGCCGGCG
CTTAAACGCCTCCTACCCAGTATTGTGGTTGTACACTCTGCTTCCGGTTA
TCTGCACTCGTTAGCGGAAGTCCTGCAGTCCCCAGCTGTGAAAACCATTC
TTGCCGACACCAAGTACGCGCGCGAGACAAAGCTCATGGACGACTTCCTC
GACCAGCTCCGCAAAGAAACCAACAAAGCGACGTATGGTCCGCGCGAGGT
TGAATTCGCTGTCGACCAGGGTGCCGTTGGCCGCGGTGGTGGCGTGCTGA
TCATCTCCAATCGGCTGTTCAGGTCACAGGACGTGGCGGAGCGCAAACGC
TGGGTATCGCTGGTAGATCGGGTACGGGATGTCGAGGGTGGAGAGGTGCG
AGTGCTCAGCTCCGACCATGAGAGTGGAAGGCGACTTGATGGGCTAGGAG
GGGTGGCAGCCCTGTTGACGTTTCCTATATTGGATGAGGATATAGAAGGG
GAGGGGGAGGTCGAGCAATAGATGCGTCTCGTCAAGAACAAGATCGAGCA
CAATGGATCCGGAACGGTGACCTTGTGTCCTGAGGAGCCTGAGGACATGT
GGCACGCATACAACCTCATCCGACCGAACGATCTCCTCCGCGCCAGCGCT
ATTCGTCGTGTCACCACAACTCAAGAAACCGGTTCCACTACCTCAGCTCG
AGTCCACTTGATGCTCGAGATCCGTGTCAAGAACCTCGACTTCGATCCGC
AGAGCTCGCAGCTGCATGTTAGCGGGACTATTGTGAACGAGACGGCACAT
ACGAAGATCGGACAGCACCATACACTTGATCTGGAGCTGAATCGGAATTT
CACATTAGAAAAGGAAGTTGGCGCGGACGGCGAGGGCGTCGGATGGGACA
GTATCGCGGTGCAGATGTTGAAGGATGCGGTGGATGAAGGGGGACAACGG
AGGGCGGAGGCGGTGGCCGTGGTGATGCAGGAAGGGTTGGCGCATATTTG
CTTTATCGGACAGTTTCAGACTATCCTAAAGCAGAAGATTGAGATGTCGG
TGCCCAGGAAACGACATGGTGGGGGTGATCATGATAAGGGCATGTCGAAA
TTCTTCCAGGTTACACTCGATACGCTGCTGCGCCAGCTTGAATTCAACAC
CAGCTCGGCTTCACTCACCAGCAGCGAGACCGTTCGGCCGGTTCTCCTTG
CATCGCCAGGCTTCGTGGCCTCCGGCTTCCAAAAGTACATCCAGTCGCAG
GCATCCACTTCGACGCCGGCGCTTAAACGCCTCCTACCCAGTATTGTGGT
TGTACACTCTGCTTCCGGTTATCTGCACTCGTTAGCGGAAGTCCTGCAGT
CCCCAGCTGTGAAAACCATTCTTGCCGACACCAAGTACGCGCGCGAGACA
AAGCTCATGGACGACTTCCTCGACCAGCTCCGCAAAGAAACCAACAAAGC
GACGTATGGTCCGCGCGAGGTTGAATTCGCTGTCGACCAGGGTGCCGTTG
GCCGCGGTGGTGGCGTGCTGATCATCTCCAATCGGCTGTTCAGGTCACAG
GACGTGGCGGAGCGCAAACGCTGGGTATCGCTGGTAGATCGGGTACGGGA
TGTCGAGGGTGGAGAGGTGCGAGTGCTCAGCTCCGACCATGAGAGTGGAA
GGCGACTTGATGGGCTAGGAGGGGTGGCAGCCCTGTTGACGTTTCCTATA
TTGGATGAGGATATAGAAGGGGAGGGGGAGGTCGAGCAATAGATGCGTCT
CGTCAAGAACAAGATCGAGCACAATGGATCCGGAACGGTGACCTTGTGTC
CTGAGGAGCCTGAGGACATGTGGCACGCATACAACCTCATCCGACCGAAC
GATCTCCTCCGCGCCAGCGCTATTCGTCGTGTCACCACAACTCAAGAAAC
CGGTTCCACTACCTCAGCTCGAGTCCACTTGATGCTCGAGATCCGTGTCA
AGAACCTCGACTTCGATCCGCAGAGCTCGCAGCTGCATGTTAGCGGGACT
ATTGTGAACGAGACGGCACATACGAAGATCGGACAGCACCATACACTTGA
TCTGGAGCTGAATCGGAATTTCACATTAGAAAAGGAAGTTGGCGCGGACG
GCGAGGGCGTCGGATGGGACAGTATCGCGGTGCAGATGTTGAAGGATGCG
GTGGATGAAGGGGGACAACGGAGGGCGGAGGCGGTGGCCGTGGTGATGCA
GGAAGGGTTGGCGCATATTTGCTTTATCGGACAGTTTCAGACTATCCTAA
AGCAGAAGATTGAGATGTCGGTGCCCAGGAAACGACATGGTGGGGGTGAT
CATGATAAGGGCATGTCGAAATTCTTCCAGGTTACACTCGATACGCTGCT
GCGCCAGCTTGAATTCAACACCAGCTCGGCTTCACTCACCAGCAGCGAGA
CCGTTCGGCCGGTTCTCCTTGCATCGCCAGGCTTCGTGGCCTCCGGCTTC
CAAAAGTACATCCAGTCGCAGGCATCCACTTCGACGCCGGCGCTTAAACG
CCTCCTACCCAGTATTGTGGTTGTACACTCTGCTTCCGGTTATCTGCACT
CGTTAGCGGAAGTCCTGCAGTCCCCAGCTGTGAAAACCATTCTTGCCGAC
ACCAAGTACGCGCGCGAGACAAAGCTCATGGACGACTTCCTCGACCAGCT
CCGCAAAGAAACCAACAAAGCGACGTATGGTCCGCGCGAGGTTGAATTCG
CTGTCGACCAGGGTGCCGTTGGCCGCGGTGGTGGCGTGCTGATCATCTCC
AATCGGCTGTTCAGGTCACAGGACGTGGCGGAGCGCAAACGCTGGGTATC
GCTGGTAGATCGGGTACGGGATGTCGAGGGTGGAGAGGTGCGAGTGCTCA
GCTCCGACCATGAGAGTGGAAGGCGACTTGATGGGCTAGGAGGGGTGGCA
GCCCTGTTGACGTTTCCTATATTGGATGAGGATATAGAAGGGGAGGGGGA
GGTCGAGCAATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0070966nuclear-transcribed mRNA catabolic process, no-go decay
GO:0070481nuclear-transcribed mRNA catabolic process, non-stop decay
GO:0071025RNA surveillance
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_004707CBS51388_004707Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_004707-T1.exon1CBS51388_004707-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_004707-T1.exon2CBS51388_004707-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_004707-T1.exon3CBS51388_004707-T1.exon3Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_004707-T1.cdsCBS51388_004707-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_004707-T1CBS51388_004707-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09262NB1
DBxrefInterPro:IPR038069
DBxrefInterPro:IPR029064
DBxrefInterPro:IPR042226
DBxrefInterPro:IPR005142
DBxrefInterPro:IPR004405
DBxrefInterPro:IPR005141
DBxrefInterPro:IPR005140
DBxrefPFAM:PF03465
DBxrefPFAM:PF03464
DBxrefPFAM:PF03463
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An07supercontigAn07:1565920..1567277 +
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