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CBS51388_004733-T1, CBS51388_004733-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_004733-T1
Unique NameCBS51388_004733-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An07:1664477..1666963-

Legend: CDSpolypeptideexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_004733-T1 ID=CBS51388_004733-T1|Name=CBS51388_004733-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=2487bp|location=Sequence derived from alignment at An07:1664477..1666963- (Aspergillus niger CBS 513.88)
ATGTCCGCCACCGCGGAGGTCCTGGTGATTTCCTCCTCGCCGGAGCGCAA
CCCAGTTCACACGCCAGCGCCGCCTGCGTATGATCCCGAAAGACTCTTTG
GATTGTCCCCAGTAGACGTTGAAACGACTCCGCTGCCGTCTCCGTCGGAC
TTGTTTTGTCCTCCGACGCATTCTAGGTTTTTCGAGGTTGGGAATCAGGT
CGACGAATTGCGCCGAGATGAAACCCGCAAGAAGTCTAGTACCTTGACGA
ATGATGATTCCGCTGTTACAACGCTAGAGGGAGAACCGGCGACAGATAAA
CCGAAGCGAAGGGGTAGGCCAAAGAAGGAGCAGAAAAGAGCTACGGAGGA
GCTGGGGCCCTGTGTTACGGGCAACGAGAAGACTACTACGAAAAAGACTA
TCACAGGAACTAGTAAGAAACGCGCTCAACCTGCGACAAAGCGCTCGAAG
CAGGCGAATAAGACTATTTCTGGGAGGGTTGCGAAGGCGGGCACTCCGCA
AGTCAAGGAGGCGGGCGAGAAGGCTATTTGTCCGTCGACACCAACGACTG
CTCTGCCCCTGAAGGCTACGAATGATGTGCTGGAATGGGAAAGGGATGGC
TTACAGCTTGAGCAAGCGATGACGCGGAGATTGGACTGGACACCTACAGT
CAATAAGGTTAAGGAAGTCGTTGAGTTGGAAGGGAAGTCAGGGTCAGATG
ATAATACAAGGGGTTTTGGTAACCTGCTGTCGGAGTATGGGTTTAATGGA
GCTGCTGCTCCTGTAAACGACTTTATGGCCTCTGTCGAAGGTGGACCGAC
GAAGCGAAGGCGGATAGAGCTGGTTGATCCCGGAGTATATCCTGCTCCCA
GACAAAGTGTCGCCGACGATAGTGAGAAGGATAACACAGAGGGAACCCGC
AAATCAACACCAGCTGCGCGAAAGAAGCCGACGAAGCGTGCCAACAAATT
TACCACTCTCACTGCCCGCGTGACAGCGAAGTATATCAACGAGTCTACGG
AGGGTTCAGATGTCGTAGACGAAGAGACACCGAAAGCGAAGCCTAAAGTT
TCAAGATCCAAGAAAAAGGGCCAGGCAAGCAAGTCTTACGAACCCGAGTT
CGTGGTGCTTTCTCCCGAAGAAGCTGCTAAGTCCCTCGATGATCAAGAGC
TGGTATTTGGCACATGCAGCCAGCTGGAGCGGGAAGACTCACCCACTACT
ATAAGAGAGCTGCAGGCAGCTATTAGCGAGTCGGAACGAAGCATGACGTT
GGAAGCCAGCGGTCGTCCGCATCGAACGCAAAGCAAGGGCTCATCCTCTA
CAGTCTCACGCTTCAATGGCTCAGGAAACTTGTGGTCGGTCGCATCTCGG
GATGTTGACGGTTCACTAATGCAGGTAGAAGTGGTGGATCTGGTGAATTC
GCCTGATAGATCTGGGACTATCACTCTGGATGAGCGACCTAGCAACGCCA
AGAGAGTAGCTGAAGCCGAATGCAATACCAGCGACATCAACCCTACCCAG
AAAGGTAGCGACCAGGCAAAAGCTGCTTCGACAAGCGAAACACAGCCTGT
TGTACCTTCAACCACTCAGTCAAAGAACAAAAAGGCCGAGAATACCACAT
CCATTGCCCGCAAGCCCGACCCTAAGATGCCGCAATACGACAACTTCACA
GATGCCCAGCTATCGAAACAAGCCGCCTCATTCGGCTTCAAACCGCTCAA
AAACCGGAAGAAGATGATTGAGCTGCTTGAAAAGTGCTGGAAAGCAAAGA
ACAGCATATCATCAGAGGCAAACAACGAGAATACAGATCAGGAAACGCCT
GCTGAACCCGAATCAGCACCTGAGCCTGGTAATAAGCCAAAGGGGAAAGG
AACAACACGGAAAACCACCACGAAGGCGAAAGCCAAAACTCAACCTAGTA
CATCATCAAAGTCAACAACCGAAGCCATCTCAACAACAAAATCTCCAAGC
AATCCCAACTCTAACACCACAACCTCAACCTCAACCTCAATTTCCAAACC
TACCCCTTCCTACGCCAACGTCGAGGAAATCGAAGACTCCGAAGAAGACT
CCGACCCCATCTCCTTCCCCTCTCCCAGCCGCCTCCTACCCCAGACCCTC
CAAACAAATCACAAACACGCCCACACCCTCCCTACATCCAACTTACCATC
AAGTCCTAATCGAACCACATCCACATCCGTTCCCAAAGAACCAGAACCCC
CCGCCATACTTCTCCCCCTAACTGAGCAAATCACCAAAGCCGTGCGTGCC
CAATCCGCAGCCCACCCTGCATCATCCAACAGCAATAAGACTCACACAAG
GAAACAAACATGGCACGAGAAAATTCTCATGTACGACCCTATTCCTTTGG
AGGAGTTCACCACTTGGTTAAACACAGAGGGACTGGGTCTCGTGAATGAG
GATCGGGAGGTCGGGGCGGGGTTCGTGAGGAGGTGGTGTGAGAGTAAGGG
GGTGGTTTGTTGTTATAGGCCGAGGAAGAAGGAGTGA
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Coding sequence (CDS) from alignment at An07:1664477..1666963-

>CBS51388_004733-T1 ID=CBS51388_004733-T1|Name=CBS51388_004733-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=2487bp|location=Sequence derived from alignment at An07:1664477..1666963- (Aspergillus niger CBS 513.88)
ATGTCCGCCACCGCGGAGGTCCTGGTGATTTCCTCCTCGCCGGAGCGCAA
CCCAGTTCACACGCCAGCGCCGCCTGCGTATGATCCCGAAAGACTCTTTG
GATTGTCCCCAGTAGACGTTGAAACGACTCCGCTGCCGTCTCCGTCGGAC
TTGTTTTGTCCTCCGACGCATTCTAGGTTTTTCGAGGTTGGGAATCAGGT
CGACGAATTGCGCCGAGATGAAACCCGCAAGAAGTCTAGTACCTTGACGA
ATGATGATTCCGCTGTTACAACGCTAGAGGGAGAACCGGCGACAGATAAA
CCGAAGCGAAGGGGTAGGCCAAAGAAGGAGCAGAAAAGAGCTACGGAGGA
GCTGGGGCCCTGTGTTACGGGCAACGAGAAGACTACTACGAAAAAGACTA
TCACAGGAACTAGTAAGAAACGCGCTCAACCTGCGACAAAGCGCTCGAAG
CAGGCGAATAAGACTATTTCTGGGAGGGTTGCGAAGGCGGGCACTCCGCA
AGTCAAGGAGGCGGGCGAGAAGGCTATTTGTCCGTCGACACCAACGACTG
CTCTGCCCCTGAAGGCTACGAATGATGTGCTGGAATGGGAAAGGGATGGC
TTACAGCTTGAGCAAGCGATGACGCGGAGATTGGACTGGACACCTACAGT
CAATAAGGTTAAGGAAGTCGTTGAGTTGGAAGGGAAGTCAGGGTCAGATG
ATAATACAAGGGGTTTTGGTAACCTGCTGTCGGAGTATGGGTTTAATGGA
GCTGCTGCTCCTGTAAACGACTTTATGGCCTCTGTCGAAGGTGGACCGAC
GAAGCGAAGGCGGATAGAGCTGGTTGATCCCGGAGTATATCCTGCTCCCA
GACAAAGTGTCGCCGACGATAGTGAGAAGGATAACACAGAGGGAACCCGC
AAATCAACACCAGCTGCGCGAAAGAAGCCGACGAAGCGTGCCAACAAATT
TACCACTCTCACTGCCCGCGTGACAGCGAAGTATATCAACGAGTCTACGG
AGGGTTCAGATGTCGTAGACGAAGAGACACCGAAAGCGAAGCCTAAAGTT
TCAAGATCCAAGAAAAAGGGCCAGGCAAGCAAGTCTTACGAACCCGAGTT
CGTGGTGCTTTCTCCCGAAGAAGCTGCTAAGTCCCTCGATGATCAAGAGC
TGGTATTTGGCACATGCAGCCAGCTGGAGCGGGAAGACTCACCCACTACT
ATAAGAGAGCTGCAGGCAGCTATTAGCGAGTCGGAACGAAGCATGACGTT
GGAAGCCAGCGGTCGTCCGCATCGAACGCAAAGCAAGGGCTCATCCTCTA
CAGTCTCACGCTTCAATGGCTCAGGAAACTTGTGGTCGGTCGCATCTCGG
GATGTTGACGGTTCACTAATGCAGGTAGAAGTGGTGGATCTGGTGAATTC
GCCTGATAGATCTGGGACTATCACTCTGGATGAGCGACCTAGCAACGCCA
AGAGAGTAGCTGAAGCCGAATGCAATACCAGCGACATCAACCCTACCCAG
AAAGGTAGCGACCAGGCAAAAGCTGCTTCGACAAGCGAAACACAGCCTGT
TGTACCTTCAACCACTCAGTCAAAGAACAAAAAGGCCGAGAATACCACAT
CCATTGCCCGCAAGCCCGACCCTAAGATGCCGCAATACGACAACTTCACA
GATGCCCAGCTATCGAAACAAGCCGCCTCATTCGGCTTCAAACCGCTCAA
AAACCGGAAGAAGATGATTGAGCTGCTTGAAAAGTGCTGGAAAGCAAAGA
ACAGCATATCATCAGAGGCAAACAACGAGAATACAGATCAGGAAACGCCT
GCTGAACCCGAATCAGCACCTGAGCCTGGTAATAAGCCAAAGGGGAAAGG
AACAACACGGAAAACCACCACGAAGGCGAAAGCCAAAACTCAACCTAGTA
CATCATCAAAGTCAACAACCGAAGCCATCTCAACAACAAAATCTCCAAGC
AATCCCAACTCTAACACCACAACCTCAACCTCAACCTCAATTTCCAAACC
TACCCCTTCCTACGCCAACGTCGAGGAAATCGAAGACTCCGAAGAAGACT
CCGACCCCATCTCCTTCCCCTCTCCCAGCCGCCTCCTACCCCAGACCCTC
CAAACAAATCACAAACACGCCCACACCCTCCCTACATCCAACTTACCATC
AAGTCCTAATCGAACCACATCCACATCCGTTCCCAAAGAACCAGAACCCC
CCGCCATACTTCTCCCCCTAACTGAGCAAATCACCAAAGCCGTGCGTGCC
CAATCCGCAGCCCACCCTGCATCATCCAACAGCAATAAGACTCACACAAG
GAAACAAACATGGCACGAGAAAATTCTCATGTACGACCCTATTCCTTTGG
AGGAGTTCACCACTTGGTTAAACACAGAGGGACTGGGTCTCGTGAATGAG
GATCGGGAGGTCGGGGCGGGGTTCGTGAGGAGGTGGTGTGAGAGTAAGGG
GGTGGTTTGTTGTTATAGGCCGAGGAAGAAGGAGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0033557Slx1-Slx4 complex
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:00171085'-flap endonuclease activity
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
GO:0006281DNA repair
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SLX4CBS51388_004733Aspergillus niger CBS 513.88gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_004733-T1.cdsCBS51388_004733-T1.cdsAspergillus niger CBS 513.88CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_004733-T1.exon1CBS51388_004733-T1.exon1Aspergillus niger CBS 513.88exon


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_004733-T1CBS51388_004733-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR027784
DBxrefInterPro:IPR018574
DBxrefPFAM:PF09494
Product5'-flap endonuclease
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An07supercontigAn07:1664477..1666963 -
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