You are here

Home

CBS51388_005300-T1, CBS51388_005300-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_005300-T1
Unique NameCBS51388_005300-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An08:1079812..1081398+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_005300-T1 ID=CBS51388_005300-T1|Name=CBS51388_005300-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1587bp|location=Sequence derived from alignment at An08:1079812..1081398+ (Aspergillus niger CBS 513.88)
ATGTCCAGCCTCGCCAGATCTGCCAACCTCCTTTTCCGCTCTAGCAGGGC
CTCCCTGCTGCGCCCCCGCGCTGTCAACCCCATCCAGCATGTCTTCCTCG
GCGACAAGCTGGCTGCCCGTGGTATGGCAACCGCTTTCGAGCGTACCAAG
CCTCACGTCAACATTGGTAGGTTGCCATCATCATCTCTTATCCATCAATG
CAGTTACTCATCGCTATTTCATAGGTACCATTGGTCACGTCGATCACGGC
AAGGTTAGACCACAATTCCTTCCCCTCTCGCTGCGTTGATGTTTTCCCCG
ATATGGTCCGAAAACTTCTCACACGTTTCCTCTAGACCACCTTGACCGCT
GCCATCACCAAGCACCAGGCCTCCAAGGGTCTCGCTCAGTTCCTTGAGTA
TGGTGCCATTGACAAGGCTCCTGAGGAGCGTAAGCGTGGTATCACCATCT
CCTCTGCCCACATCGAGTACGCTACCGATGCTCGTCACTACTCCCACGTC
GACTGCCCCGGTCACGCCGATTACATCAAGAACATGATCACTGGTGCCGC
CAACATGGACGGTGCTATCATTGTCGTCGCCGCTTCCGACGGTCAGATGT
ACGCTGAAACCCCAACAGAATAACCCCCTTGAGTATATGTGCTTACACTG
GCTATCAACAGGCCCCAGACTCGTGAGCACTTGCTGCTTGCTCGTCAGGT
CGGTGTCCAGAAGATCGTTGTCTTCGTCAACAAGGTCGATGCCATCGATG
ACCCGGAGATGCTGGAGCTCGTCGAGCTGGAAATGCGCGAGCTTCTCAGC
AGCTACGGCTTCGAGGGTGAGGAGACCCCCATCATCTTCGGCTCTGCTCT
CTGCGCCATTGAGGACCGCCGCCCCGACATCGGTGCCGAGCGTATCGACG
CTCTCCTGGAGGCCGTTGACACTTGGATCCCCACTCCCCAGCGTGACCTT
GACAAGCCTTTCTTGATGTCCATTGAGGAAGTTTTCTCCATCCCTGGTCG
TGGTACCGTCGCTTCCGGCCGTGTTGAGCGTGGTCTCCTGAAGCGTGATA
GCGAGGTTGAGATCATCGGTACCACCAACGAGGTCATCAAGACCAAGGTC
ACCGACATTGAGACCTTCAAGAAGTCTTGCACTGAGTCCCGTGCTGGTGA
CAACTCCGGTCTCCTTCTCCGTGGTGTCCGCCGTGAGGATCTCCGCCGTG
GTATGGTCATTGCCGCTCCTGGCAGCGCCAAGGCCAACAGCAAGTTCATG
GTCTCCATGTACGTCCTGACCGAGGCTGAGGGTGGTCGCCGTACCGGTTT
CGGTGTCCAGTACCGTCCCCAGCTGTTCATCCGCACTGCCGGTAAGTGAT
ATCGTTTTACATTCCGCTACGAGAGAACAGGTTCTAATTTTGTCTGCTGC
AGATGAGGCTGCTGAGTTCAGCTTCCCCGACGGAGACCAGTCCCGCCGTA
TCATGCCCGGTGACAACGTCGAGATGATCGTCAAGACCCACCGCCCCGTC
GCCGCCGAGGCCGGTCAGCGCTTCAACATCCGTGAGGGTGGTCGCACTGT
TGCCACTGGTCTGGTCACTCGTGTCCTGACCGAGTAA
back to top

Coding sequence (CDS) from alignment at An08:1079812..1081398+

>CBS51388_005300-T1 ID=CBS51388_005300-T1|Name=CBS51388_005300-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=6615bp|location=Sequence derived from alignment at An08:1079812..1081398+ (Aspergillus niger CBS 513.88)
ATGTCCAGCCTCGCCAGATCTGCCAACCTCCTTTTCCGCTCTAGCAGGGC
CTCCCTGCTGCGCCCCCGCGCTGTCAACCCCATCCAGCATGTCTTCCTCG
GCGACAAGCTGGCTGCCCGTGGTATGGCAACCGCTTTCGAGCGTACCAAG
CCTCACGTCAACATTGGTACCATTGGTCACGTCGATCACGGCAAGACCAC
CTTGACCGCTGCCATCACCAAGCACCAGGCCTCCAAGGGTCTCGCTCAGT
TCCTTGAGTATGGTGCCATTGACAAGGCTCCTGAGGAGCGTAAGCGTGGT
ATCACCATCTCCTCTGCCCACATCGAGTACGCTACCGATGCTCGTCACTA
CTCCCACGTCGACTGCCCCGGTCACGCCGATTACATCAAGAACATGATCA
CTGGTGCCGCCAACATGGACGGTGCTATCATTGTCGTCGCCGCTTCCGAC
GGTCAGATGCCCCAGACTCGTGAGCACTTGCTGCTTGCTCGTCAGGTCGG
TGTCCAGAAGATCGTTGTCTTCGTCAACAAGGTCGATGCCATCGATGACC
CGGAGATGCTGGAGCTCGTCGAGCTGGAAATGCGCGAGCTTCTCAGCAGC
TACGGCTTCGAGGGTGAGGAGACCCCCATCATCTTCGGCTCTGCTCTCTG
CGCCATTGAGGACCGCCGCCCCGACATCGGTGCCGAGCGTATCGACGCTC
TCCTGGAGGCCGTTGACACTTGGATCCCCACTCCCCAGCGTGACCTTGAC
AAGCCTTTCTTGATGTCCATTGAGGAAGTTTTCTCCATCCCTGGTCGTGG
TACCGTCGCTTCCGGCCGTGTTGAGCGTGGTCTCCTGAAGCGTGATAGCG
AGGTTGAGATCATCGGTACCACCAACGAGGTCATCAAGACCAAGGTCACC
GACATTGAGACCTTCAAGAAGTCTTGCACTGAGTCCCGTGCTGGTGACAA
CTCCGGTCTCCTTCTCCGTGGTGTCCGCCGTGAGGATCTCCGCCGTGGTA
TGGTCATTGCCGCTCCTGGCAGCGCCAAGGCCAACAGCAAGTTCATGGTC
TCCATGTACGTCCTGACCGAGGCTGAGGGTGGTCGCCGTACCGGTTTCGG
TGTCCAGTACCGTCCCCAGCTGTTCATCCGCACTGCCGATGAGGCTGCTG
AGTTCAGCTTCCCCGACGGAGACCAGTCCCGCCGTATCATGCCCGGTGAC
AACGTCGAGATGATCGTCAAGACCCACCGCCCCGTCGCCGCCGAGGCCGG
TCAGCGCTTCAACATCCGTGAGGGTGGTCGCACTGTTGCCACTGGTCTGG
TCACTCGTGTCCTGACCGAGTAAATGTCCAGCCTCGCCAGATCTGCCAAC
CTCCTTTTCCGCTCTAGCAGGGCCTCCCTGCTGCGCCCCCGCGCTGTCAA
CCCCATCCAGCATGTCTTCCTCGGCGACAAGCTGGCTGCCCGTGGTATGG
CAACCGCTTTCGAGCGTACCAAGCCTCACGTCAACATTGGTACCATTGGT
CACGTCGATCACGGCAAGACCACCTTGACCGCTGCCATCACCAAGCACCA
GGCCTCCAAGGGTCTCGCTCAGTTCCTTGAGTATGGTGCCATTGACAAGG
CTCCTGAGGAGCGTAAGCGTGGTATCACCATCTCCTCTGCCCACATCGAG
TACGCTACCGATGCTCGTCACTACTCCCACGTCGACTGCCCCGGTCACGC
CGATTACATCAAGAACATGATCACTGGTGCCGCCAACATGGACGGTGCTA
TCATTGTCGTCGCCGCTTCCGACGGTCAGATGCCCCAGACTCGTGAGCAC
TTGCTGCTTGCTCGTCAGGTCGGTGTCCAGAAGATCGTTGTCTTCGTCAA
CAAGGTCGATGCCATCGATGACCCGGAGATGCTGGAGCTCGTCGAGCTGG
AAATGCGCGAGCTTCTCAGCAGCTACGGCTTCGAGGGTGAGGAGACCCCC
ATCATCTTCGGCTCTGCTCTCTGCGCCATTGAGGACCGCCGCCCCGACAT
CGGTGCCGAGCGTATCGACGCTCTCCTGGAGGCCGTTGACACTTGGATCC
CCACTCCCCAGCGTGACCTTGACAAGCCTTTCTTGATGTCCATTGAGGAA
GTTTTCTCCATCCCTGGTCGTGGTACCGTCGCTTCCGGCCGTGTTGAGCG
TGGTCTCCTGAAGCGTGATAGCGAGGTTGAGATCATCGGTACCACCAACG
AGGTCATCAAGACCAAGGTCACCGACATTGAGACCTTCAAGAAGTCTTGC
ACTGAGTCCCGTGCTGGTGACAACTCCGGTCTCCTTCTCCGTGGTGTCCG
CCGTGAGGATCTCCGCCGTGGTATGGTCATTGCCGCTCCTGGCAGCGCCA
AGGCCAACAGCAAGTTCATGGTCTCCATGTACGTCCTGACCGAGGCTGAG
GGTGGTCGCCGTACCGGTTTCGGTGTCCAGTACCGTCCCCAGCTGTTCAT
CCGCACTGCCGATGAGGCTGCTGAGTTCAGCTTCCCCGACGGAGACCAGT
CCCGCCGTATCATGCCCGGTGACAACGTCGAGATGATCGTCAAGACCCAC
CGCCCCGTCGCCGCCGAGGCCGGTCAGCGCTTCAACATCCGTGAGGGTGG
TCGCACTGTTGCCACTGGTCTGGTCACTCGTGTCCTGACCGAGTAAATGT
CCAGCCTCGCCAGATCTGCCAACCTCCTTTTCCGCTCTAGCAGGGCCTCC
CTGCTGCGCCCCCGCGCTGTCAACCCCATCCAGCATGTCTTCCTCGGCGA
CAAGCTGGCTGCCCGTGGTATGGCAACCGCTTTCGAGCGTACCAAGCCTC
ACGTCAACATTGGTACCATTGGTCACGTCGATCACGGCAAGACCACCTTG
ACCGCTGCCATCACCAAGCACCAGGCCTCCAAGGGTCTCGCTCAGTTCCT
TGAGTATGGTGCCATTGACAAGGCTCCTGAGGAGCGTAAGCGTGGTATCA
CCATCTCCTCTGCCCACATCGAGTACGCTACCGATGCTCGTCACTACTCC
CACGTCGACTGCCCCGGTCACGCCGATTACATCAAGAACATGATCACTGG
TGCCGCCAACATGGACGGTGCTATCATTGTCGTCGCCGCTTCCGACGGTC
AGATGCCCCAGACTCGTGAGCACTTGCTGCTTGCTCGTCAGGTCGGTGTC
CAGAAGATCGTTGTCTTCGTCAACAAGGTCGATGCCATCGATGACCCGGA
GATGCTGGAGCTCGTCGAGCTGGAAATGCGCGAGCTTCTCAGCAGCTACG
GCTTCGAGGGTGAGGAGACCCCCATCATCTTCGGCTCTGCTCTCTGCGCC
ATTGAGGACCGCCGCCCCGACATCGGTGCCGAGCGTATCGACGCTCTCCT
GGAGGCCGTTGACACTTGGATCCCCACTCCCCAGCGTGACCTTGACAAGC
CTTTCTTGATGTCCATTGAGGAAGTTTTCTCCATCCCTGGTCGTGGTACC
GTCGCTTCCGGCCGTGTTGAGCGTGGTCTCCTGAAGCGTGATAGCGAGGT
TGAGATCATCGGTACCACCAACGAGGTCATCAAGACCAAGGTCACCGACA
TTGAGACCTTCAAGAAGTCTTGCACTGAGTCCCGTGCTGGTGACAACTCC
GGTCTCCTTCTCCGTGGTGTCCGCCGTGAGGATCTCCGCCGTGGTATGGT
CATTGCCGCTCCTGGCAGCGCCAAGGCCAACAGCAAGTTCATGGTCTCCA
TGTACGTCCTGACCGAGGCTGAGGGTGGTCGCCGTACCGGTTTCGGTGTC
CAGTACCGTCCCCAGCTGTTCATCCGCACTGCCGATGAGGCTGCTGAGTT
CAGCTTCCCCGACGGAGACCAGTCCCGCCGTATCATGCCCGGTGACAACG
TCGAGATGATCGTCAAGACCCACCGCCCCGTCGCCGCCGAGGCCGGTCAG
CGCTTCAACATCCGTGAGGGTGGTCGCACTGTTGCCACTGGTCTGGTCAC
TCGTGTCCTGACCGAGTAAATGTCCAGCCTCGCCAGATCTGCCAACCTCC
TTTTCCGCTCTAGCAGGGCCTCCCTGCTGCGCCCCCGCGCTGTCAACCCC
ATCCAGCATGTCTTCCTCGGCGACAAGCTGGCTGCCCGTGGTATGGCAAC
CGCTTTCGAGCGTACCAAGCCTCACGTCAACATTGGTACCATTGGTCACG
TCGATCACGGCAAGACCACCTTGACCGCTGCCATCACCAAGCACCAGGCC
TCCAAGGGTCTCGCTCAGTTCCTTGAGTATGGTGCCATTGACAAGGCTCC
TGAGGAGCGTAAGCGTGGTATCACCATCTCCTCTGCCCACATCGAGTACG
CTACCGATGCTCGTCACTACTCCCACGTCGACTGCCCCGGTCACGCCGAT
TACATCAAGAACATGATCACTGGTGCCGCCAACATGGACGGTGCTATCAT
TGTCGTCGCCGCTTCCGACGGTCAGATGCCCCAGACTCGTGAGCACTTGC
TGCTTGCTCGTCAGGTCGGTGTCCAGAAGATCGTTGTCTTCGTCAACAAG
GTCGATGCCATCGATGACCCGGAGATGCTGGAGCTCGTCGAGCTGGAAAT
GCGCGAGCTTCTCAGCAGCTACGGCTTCGAGGGTGAGGAGACCCCCATCA
TCTTCGGCTCTGCTCTCTGCGCCATTGAGGACCGCCGCCCCGACATCGGT
GCCGAGCGTATCGACGCTCTCCTGGAGGCCGTTGACACTTGGATCCCCAC
TCCCCAGCGTGACCTTGACAAGCCTTTCTTGATGTCCATTGAGGAAGTTT
TCTCCATCCCTGGTCGTGGTACCGTCGCTTCCGGCCGTGTTGAGCGTGGT
CTCCTGAAGCGTGATAGCGAGGTTGAGATCATCGGTACCACCAACGAGGT
CATCAAGACCAAGGTCACCGACATTGAGACCTTCAAGAAGTCTTGCACTG
AGTCCCGTGCTGGTGACAACTCCGGTCTCCTTCTCCGTGGTGTCCGCCGT
GAGGATCTCCGCCGTGGTATGGTCATTGCCGCTCCTGGCAGCGCCAAGGC
CAACAGCAAGTTCATGGTCTCCATGTACGTCCTGACCGAGGCTGAGGGTG
GTCGCCGTACCGGTTTCGGTGTCCAGTACCGTCCCCAGCTGTTCATCCGC
ACTGCCGATGAGGCTGCTGAGTTCAGCTTCCCCGACGGAGACCAGTCCCG
CCGTATCATGCCCGGTGACAACGTCGAGATGATCGTCAAGACCCACCGCC
CCGTCGCCGCCGAGGCCGGTCAGCGCTTCAACATCCGTGAGGGTGGTCGC
ACTGTTGCCACTGGTCTGGTCACTCGTGTCCTGACCGAGTAAATGTCCAG
CCTCGCCAGATCTGCCAACCTCCTTTTCCGCTCTAGCAGGGCCTCCCTGC
TGCGCCCCCGCGCTGTCAACCCCATCCAGCATGTCTTCCTCGGCGACAAG
CTGGCTGCCCGTGGTATGGCAACCGCTTTCGAGCGTACCAAGCCTCACGT
CAACATTGGTACCATTGGTCACGTCGATCACGGCAAGACCACCTTGACCG
CTGCCATCACCAAGCACCAGGCCTCCAAGGGTCTCGCTCAGTTCCTTGAG
TATGGTGCCATTGACAAGGCTCCTGAGGAGCGTAAGCGTGGTATCACCAT
CTCCTCTGCCCACATCGAGTACGCTACCGATGCTCGTCACTACTCCCACG
TCGACTGCCCCGGTCACGCCGATTACATCAAGAACATGATCACTGGTGCC
GCCAACATGGACGGTGCTATCATTGTCGTCGCCGCTTCCGACGGTCAGAT
GCCCCAGACTCGTGAGCACTTGCTGCTTGCTCGTCAGGTCGGTGTCCAGA
AGATCGTTGTCTTCGTCAACAAGGTCGATGCCATCGATGACCCGGAGATG
CTGGAGCTCGTCGAGCTGGAAATGCGCGAGCTTCTCAGCAGCTACGGCTT
CGAGGGTGAGGAGACCCCCATCATCTTCGGCTCTGCTCTCTGCGCCATTG
AGGACCGCCGCCCCGACATCGGTGCCGAGCGTATCGACGCTCTCCTGGAG
GCCGTTGACACTTGGATCCCCACTCCCCAGCGTGACCTTGACAAGCCTTT
CTTGATGTCCATTGAGGAAGTTTTCTCCATCCCTGGTCGTGGTACCGTCG
CTTCCGGCCGTGTTGAGCGTGGTCTCCTGAAGCGTGATAGCGAGGTTGAG
ATCATCGGTACCACCAACGAGGTCATCAAGACCAAGGTCACCGACATTGA
GACCTTCAAGAAGTCTTGCACTGAGTCCCGTGCTGGTGACAACTCCGGTC
TCCTTCTCCGTGGTGTCCGCCGTGAGGATCTCCGCCGTGGTATGGTCATT
GCCGCTCCTGGCAGCGCCAAGGCCAACAGCAAGTTCATGGTCTCCATGTA
CGTCCTGACCGAGGCTGAGGGTGGTCGCCGTACCGGTTTCGGTGTCCAGT
ACCGTCCCCAGCTGTTCATCCGCACTGCCGATGAGGCTGCTGAGTTCAGC
TTCCCCGACGGAGACCAGTCCCGCCGTATCATGCCCGGTGACAACGTCGA
GATGATCGTCAAGACCCACCGCCCCGTCGCCGCCGAGGCCGGTCAGCGCT
TCAACATCCGTGAGGGTGGTCGCACTGTTGCCACTGGTCTGGTCACTCGT
GTCCTGACCGAGTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
Vocabulary: Molecular Function
TermDefinition
GO:0003746translation elongation factor activity
GO:0005525GTP binding
GO:0003924GTPase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
TUF1CBS51388_005300Aspergillus niger CBS 513.88gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_005300-T1CBS51388_005300-T1-proteinAspergillus niger CBS 513.88polypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_005300-T1.exon1CBS51388_005300-T1.exon1Aspergillus niger CBS 513.88exon
CBS51388_005300-T1.exon2CBS51388_005300-T1.exon2Aspergillus niger CBS 513.88exon
CBS51388_005300-T1.exon3CBS51388_005300-T1.exon3Aspergillus niger CBS 513.88exon
CBS51388_005300-T1.exon4CBS51388_005300-T1.exon4Aspergillus niger CBS 513.88exon
CBS51388_005300-T1.exon5CBS51388_005300-T1.exon5Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_005300-T1.cdsCBS51388_005300-T1.cdsAspergillus niger CBS 513.88CDS


Properties
Property NameValue
DBxrefInterPro:IPR009001
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR009000
DBxrefInterPro:IPR041709
DBxrefInterPro:IPR033720
DBxrefInterPro:IPR031157
DBxrefInterPro:IPR004161
DBxrefInterPro:IPR004541
DBxrefInterPro:IPR004160
DBxrefInterPro:IPR005225
DBxrefInterPro:IPR000795
DBxrefPFAM:PF01926
DBxrefPFAM:PF03143
DBxrefPFAM:PF03144
DBxrefPFAM:PF00009
Producttranslation elongation factor Tu
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An08supercontigAn08:1079812..1081398 +
Powered by Drupal