You are here

Home

CBS51388_006263-T1, CBS51388_006263-T1 (mRNA) Aspergillus niger CBS 513.88

Overview
NameCBS51388_006263-T1
Unique NameCBS51388_006263-T1
TypemRNA
OrganismAspergillus niger CBS 513.88
Sequences
The following sequences are available for this feature:

mRNA from alignment at An09:1127767..1129452+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CBS51388_006263-T1 ID=CBS51388_006263-T1|Name=CBS51388_006263-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1686bp|location=Sequence derived from alignment at An09:1127767..1129452+ (Aspergillus niger CBS 513.88)
ATGTCCTCTGCTCTGGATCGCTCCAGTCGACCACCCATTGGAAGTATACG
TCGAAGGACGAAAAAGGCGTGTGAAACCTGCAAGTTGCGTAAGCGGAAAT
GTGACGGTCATGAGCCATGCTCATTCTGCCTCAAATACGAATATGACTGC
GCGTACGAGGCTCAACCACGGAAGAAGCCATCAAGGCCAAGCATTGCAAG
GCCTTCGACCAAGCCCCTTGAAAGGGCATCCTCTCCAGCACTTGCGGCAA
GGGCTGATGTCAATCAACAGCAGATGGAGGCGAACTCAGGCACGGCATTC
CCTCACTTTTTGGGAAAGAGCTTGAACCCGCAGAACCCTCCAAAGGTGCA
CGGCTTCAGCTGGAACCTAGGGCTTCGACATGAGCCCATACAACAATTCG
CTAACATCTCGAGCCTAGTCTCTAAAGATGAGATGAGTGCTCTTGTTGGC
CATTATCTAGAACGTATACACCCCATATATGCTGTTCTCGATCTTGATAT
GCTAGAGAAAAAGGTCGGACTGCGCTGGGATAATTCTATCACTTTTGACA
GCTATGATCCAGTTCTTTGCGGTGTTGCGGCCTTGGGATCGCTTTACTCA
GGCGATAATGGACATAGGAACGAAGAAGCGCTGGTCCAGTGCGCAAAGGA
AATCTTGGAAGCAACCTGTACTATGAATAAACCACTCATACACCATGCTA
CTGGATGGGTCTTACGTACCCTCTACCTGCGAAGCACCGGCTGTCCTCAT
ACCTCATGGATGGCCAGCTGCTCTGCAATGCACATCATCGAAGCAGCAGG
GGCACATCAGGATCCAGGGATGATCTCTCTGGTGTATTCTGACACGGCGG
ATGTTGGTGTCGATGAAGAAAGTCAGCGCAGGCTATTTTGGGTTGCGACG
GTTCTAAATACGTGGATCTCGTATGAATATGGCAGGTCTCGCGTCATCTT
ACGAGGCATTTCCTGCAAGCCACCTGTGCCACGAGCGGGAGATTTGACTG
CGGAACTGGTCTCATTGTTCCAGATTTCTCAGCGGCTGGATCCCGATCAG
AACAATAGACCTTCAGACCTTGAAGATGTATTATATCACGTCCAAAGTCT
AACTCTTAGCCACGATGCCTTGGTTCTGTCCCAAGCTAATCTAGCACTTA
CGATATACCGTCGTCTCCGTGTGGCTGCTTCCAGTATTTCAAACGATGTC
ATAAACTGCGTCATTCGAATGGGCAGTGACGGTACTGCTGCTGCGGTCCG
TATGTCTGAGAATCGCAGTCCTTGGTGGCATGTTGCCAATGTTCCCTTTC
AGTTTCTCTGCATCTTGCTCGCAATAGATTCTAAGGAGTCATTGTCACAC
GTGGGCCACGCCATGCGCTCATTCAAGACTATTGGGAGCCACTTTAATAC
GCCTACTGTCCACATCGCTATAGAGACCGTCGATTCCTTAATCAAGCTGT
TACAAAGGAAGAAAGAGCGGGAAATTAATCTTCTAAGGGATAGCATCCAG
GATCAGGACTCAGGACCGTTTGAACGAAACTTATCATCTACGCAAGAGTA
CGGTTCGCCATTGCAAGGAGGCTTATTCGATGGAAACAATCTAGAAATGA
TAGACTGGGATTGGAACGCCTTTTTCGATGCCGAAATACCACTCTTTGAC
GACAGGGGGCATGGCGGGCAGATGAGGTATGGGTAA
back to top

Coding sequence (CDS) from alignment at An09:1127767..1129452+

>CBS51388_006263-T1 ID=CBS51388_006263-T1|Name=CBS51388_006263-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1686bp|location=Sequence derived from alignment at An09:1127767..1129452+ (Aspergillus niger CBS 513.88)
ATGTCCTCTGCTCTGGATCGCTCCAGTCGACCACCCATTGGAAGTATACG
TCGAAGGACGAAAAAGGCGTGTGAAACCTGCAAGTTGCGTAAGCGGAAAT
GTGACGGTCATGAGCCATGCTCATTCTGCCTCAAATACGAATATGACTGC
GCGTACGAGGCTCAACCACGGAAGAAGCCATCAAGGCCAAGCATTGCAAG
GCCTTCGACCAAGCCCCTTGAAAGGGCATCCTCTCCAGCACTTGCGGCAA
GGGCTGATGTCAATCAACAGCAGATGGAGGCGAACTCAGGCACGGCATTC
CCTCACTTTTTGGGAAAGAGCTTGAACCCGCAGAACCCTCCAAAGGTGCA
CGGCTTCAGCTGGAACCTAGGGCTTCGACATGAGCCCATACAACAATTCG
CTAACATCTCGAGCCTAGTCTCTAAAGATGAGATGAGTGCTCTTGTTGGC
CATTATCTAGAACGTATACACCCCATATATGCTGTTCTCGATCTTGATAT
GCTAGAGAAAAAGGTCGGACTGCGCTGGGATAATTCTATCACTTTTGACA
GCTATGATCCAGTTCTTTGCGGTGTTGCGGCCTTGGGATCGCTTTACTCA
GGCGATAATGGACATAGGAACGAAGAAGCGCTGGTCCAGTGCGCAAAGGA
AATCTTGGAAGCAACCTGTACTATGAATAAACCACTCATACACCATGCTA
CTGGATGGGTCTTACGTACCCTCTACCTGCGAAGCACCGGCTGTCCTCAT
ACCTCATGGATGGCCAGCTGCTCTGCAATGCACATCATCGAAGCAGCAGG
GGCACATCAGGATCCAGGGATGATCTCTCTGGTGTATTCTGACACGGCGG
ATGTTGGTGTCGATGAAGAAAGTCAGCGCAGGCTATTTTGGGTTGCGACG
GTTCTAAATACGTGGATCTCGTATGAATATGGCAGGTCTCGCGTCATCTT
ACGAGGCATTTCCTGCAAGCCACCTGTGCCACGAGCGGGAGATTTGACTG
CGGAACTGGTCTCATTGTTCCAGATTTCTCAGCGGCTGGATCCCGATCAG
AACAATAGACCTTCAGACCTTGAAGATGTATTATATCACGTCCAAAGTCT
AACTCTTAGCCACGATGCCTTGGTTCTGTCCCAAGCTAATCTAGCACTTA
CGATATACCGTCGTCTCCGTGTGGCTGCTTCCAGTATTTCAAACGATGTC
ATAAACTGCGTCATTCGAATGGGCAGTGACGGTACTGCTGCTGCGGTCCG
TATGTCTGAGAATCGCAGTCCTTGGTGGCATGTTGCCAATGTTCCCTTTC
AGTTTCTCTGCATCTTGCTCGCAATAGATTCTAAGGAGTCATTGTCACAC
GTGGGCCACGCCATGCGCTCATTCAAGACTATTGGGAGCCACTTTAATAC
GCCTACTGTCCACATCGCTATAGAGACCGTCGATTCCTTAATCAAGCTGT
TACAAAGGAAGAAAGAGCGGGAAATTAATCTTCTAAGGGATAGCATCCAG
GATCAGGACTCAGGACCGTTTGAACGAAACTTATCATCTACGCAAGAGTA
CGGTTCGCCATTGCAAGGAGGCTTATTCGATGGAAACAATCTAGAAATGA
TAGACTGGGATTGGAACGCCTTTTTCGATGCCGAAATACCACTCTTTGAC
GACAGGGGGCATGGCGGGCAGATGAGGTATGGGTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0042025host cell nucleus
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO:0006351transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0008270zinc ion binding
GO:0003677DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CBS51388_006263CBS51388_006263Aspergillus niger CBS 513.88gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_006263-T1.exon1CBS51388_006263-T1.exon1Aspergillus niger CBS 513.88exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_006263-T1.cdsCBS51388_006263-T1.cdsAspergillus niger CBS 513.88CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CBS51388_006263-T1CBS51388_006263-T1-proteinAspergillus niger CBS 513.88polypeptide


Properties
Property NameValue
NoteantiSMASH:Cluster_9.7
DBxrefInterPro:IPR036864
DBxrefInterPro:IPR001138
DBxrefInterPro:IPR007219
DBxrefPFAM:PF00172
Producthypothetical protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger CBS 513.88 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
An09supercontigAn09:1127767..1129452 +
Powered by Drupal