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Sequences
The following sequences are available for this feature:
mRNA from alignment at An10:108128..109369+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CBS51388_006451-T1 ID=CBS51388_006451-T1|Name=CBS51388_006451-T1|organism=Aspergillus niger CBS 513.88|type=mRNA|length=1242bp|location=Sequence derived from alignment at An10:108128..109369+ (Aspergillus niger CBS 513.88)
ATGCGCACTTCTCGAGCTTCTAAAGAGACTGCGAAGGTTCTGCAGGCTTT
GTCGCCTCCTGCTCGTCGACAAACTCGCAGTTCGGCTCAGGCTGCTAGTC
TCCTTCAGGGCTTTGCTTTTGGGGGTGGTACTGCCCCGGATGCATCTATC
AGTGATGATGATACTTCTTCGCTCTCGTCGGTGCCGACGGTTGATATCGA
GGATATCGTAGAGCTGCCGGCCAAGCGTCGCAAGAGTGCTTTGAGCAGTT
CTGTCACGAGGACGAGTGCGCGCTCTACTCGGAGGGCTGTCAAAGCAGAG
ACCCCTGTCAAAGAGGAAGCACCTGTCAAGGAAGAGCCGGTTGAGAAGCC
GCAAAAGGCACGACGGATGCCCGCGCGCAAGATCAAAATCGAGAATGGTG
GTTATTCCATGGAGCCGCCGTCTAACTGGGAGACTATGTATGACATGGTC
AAGAAGATGCGAGAGGCAAATCCCACTGCACCCGTTGACACCATGGGCTG
TGCCGAACTCTACTGGCGTGCATCCTCTCCGCGCGATCGCCGTTTCCAGA
CTCTCATCGCGCTAATGCTATCATCCCAGACCAAGGACACAGTCACGGCG
GTGGCCATGCAGCGGTTGCACACGGAGCTTGGAGACCAGTCGACAACCAT
TGTGAAGAAGGAGCCCGAAGATTATGACTGGAAGCCCACGGACCAGGTCA
AGGACAGCACTTTGAACCTGGAGAACATCCTAGCCGTCACCCCTGAGCGC
CTGAACGAACTTATTGCCAAGGTGGGCTTCCACAACAACAAGACCAAGTA
TATCAAGGCCGCGGCCATCATCCTCCGCGATCAATATGACTCCGATATCC
CGTCGACTGCTCCTGAACTGATGAAGCTCCCGGGCGTCGGTCCGAAGATG
GCGTTTCTCTGTATGAGCGCGGCGTGGGGCAAGCACGAAGGCATTGGCGT
TGATGTTCACGTTCACCGGATTACCAACCTCTGGGGCTGGCACAAGACGA
AGAATCCCGAGGAAACTCGCATGGCGCTGGAGTCGTGGCTACCAAAAGAC
AAGTGGCACGAGATCAACAAACTCTTGGTCGGCTTAGGACAGACGGTCTG
CTTACCTGTAGCCCGGAGATGCGGAGAATGCGATCTTGCAGGAACGAAGC
TCTGTAAGAGCGAAATCAAGGGTCTGGTAACACTGAAGCGAGACGCTGCT
GTGAAGCAGGAGGAGCCGAAGGTGAAGGTCGAGCAGGAGTAG back to topCoding sequence (CDS) from alignment at An10:108128..109369+ >CBS51388_006451-T1 ID=CBS51388_006451-T1|Name=CBS51388_006451-T1|organism=Aspergillus niger CBS 513.88|type=CDS|length=1242bp|location=Sequence derived from alignment at An10:108128..109369+ (Aspergillus niger CBS 513.88)
ATGCGCACTTCTCGAGCTTCTAAAGAGACTGCGAAGGTTCTGCAGGCTTT
GTCGCCTCCTGCTCGTCGACAAACTCGCAGTTCGGCTCAGGCTGCTAGTC
TCCTTCAGGGCTTTGCTTTTGGGGGTGGTACTGCCCCGGATGCATCTATC
AGTGATGATGATACTTCTTCGCTCTCGTCGGTGCCGACGGTTGATATCGA
GGATATCGTAGAGCTGCCGGCCAAGCGTCGCAAGAGTGCTTTGAGCAGTT
CTGTCACGAGGACGAGTGCGCGCTCTACTCGGAGGGCTGTCAAAGCAGAG
ACCCCTGTCAAAGAGGAAGCACCTGTCAAGGAAGAGCCGGTTGAGAAGCC
GCAAAAGGCACGACGGATGCCCGCGCGCAAGATCAAAATCGAGAATGGTG
GTTATTCCATGGAGCCGCCGTCTAACTGGGAGACTATGTATGACATGGTC
AAGAAGATGCGAGAGGCAAATCCCACTGCACCCGTTGACACCATGGGCTG
TGCCGAACTCTACTGGCGTGCATCCTCTCCGCGCGATCGCCGTTTCCAGA
CTCTCATCGCGCTAATGCTATCATCCCAGACCAAGGACACAGTCACGGCG
GTGGCCATGCAGCGGTTGCACACGGAGCTTGGAGACCAGTCGACAACCAT
TGTGAAGAAGGAGCCCGAAGATTATGACTGGAAGCCCACGGACCAGGTCA
AGGACAGCACTTTGAACCTGGAGAACATCCTAGCCGTCACCCCTGAGCGC
CTGAACGAACTTATTGCCAAGGTGGGCTTCCACAACAACAAGACCAAGTA
TATCAAGGCCGCGGCCATCATCCTCCGCGATCAATATGACTCCGATATCC
CGTCGACTGCTCCTGAACTGATGAAGCTCCCGGGCGTCGGTCCGAAGATG
GCGTTTCTCTGTATGAGCGCGGCGTGGGGCAAGCACGAAGGCATTGGCGT
TGATGTTCACGTTCACCGGATTACCAACCTCTGGGGCTGGCACAAGACGA
AGAATCCCGAGGAAACTCGCATGGCGCTGGAGTCGTGGCTACCAAAAGAC
AAGTGGCACGAGATCAACAAACTCTTGGTCGGCTTAGGACAGACGGTCTG
CTTACCTGTAGCCCGGAGATGCGGAGAATGCGATCTTGCAGGAACGAAGC
TCTGTAAGAGCGAAATCAAGGGTCTGGTAACACTGAAGCGAGACGCTGCT
GTGAAGCAGGAGGAGCCGAAGGTGAAGGTCGAGCAGGAGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005634 | nucleus |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
| GO:0003906 | DNA-(apurinic or apyrimidinic site) endonuclease activity |
| GO:0019104 | DNA N-glycosylase activity |
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
| GO:0006285 | base-excision repair, AP site formation |
| GO:0006284 | base-excision repair |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09263R4M |
| DBxref | InterPro:IPR011257 |
| DBxref | InterPro:IPR030841 |
| DBxref | InterPro:IPR004036 |
| DBxref | InterPro:IPR023170 |
| DBxref | InterPro:IPR000445 |
| DBxref | InterPro:IPR003265 |
| DBxref | PFAM:PF00730 |
| DBxref | PFAM:PF00633 |
| Product | alpha-trehalase nth1 |
| Product | alpha |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| An10 | supercontig | An10:108128..109369 + |
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